mRNA_H-paniculata_contig11700.1089.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11700.1089.1
Unique NamemRNA_H-paniculata_contig11700.1089.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11700.1089.1 vs. uniprot
Match: D8LQX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX2_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.130e-10
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   13 GTSRAIREAEEQVNSLKLRIDKKRRRLDVASLERDATKAEYQERVGGGRRSALKESIAWLEHAKLYL 213
            G  RA  +A+++V  LK R+  K RRL+ A  +RDA +AEYQ  +G G+RSALKES+AWLEHA L L
Sbjct: 1060 GVGRAPSDAQDEVARLKARLKNKTRRLEGAIFDRDAIRAEYQHLIGKGQRSALKESLAWLEHAALQL 1126
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11700.1089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQX2_ECTSI1.130e-1055.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11700contigH-paniculata_contig11700:2335..5941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size673
Cds size252
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11700.1089.1prot_H-paniculata_contig11700.1089.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11700 2335..5520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928879.1770058-CDS-H-paniculata_contig11700:2334..23821622928879.1770058-CDS-H-paniculata_contig11700:2334..2382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11700 2335..2382 +
1691480654.5313463-CDS-H-paniculata_contig11700:2334..23821691480654.5313463-CDS-H-paniculata_contig11700:2334..2382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11700 2335..2382 +
1622928879.198828-CDS-H-paniculata_contig11700:2881..29711622928879.198828-CDS-H-paniculata_contig11700:2881..2971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11700 2882..2971 +
1691480654.538889-CDS-H-paniculata_contig11700:2881..29711691480654.538889-CDS-H-paniculata_contig11700:2881..2971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11700 2882..2971 +
1622928879.2132826-CDS-H-paniculata_contig11700:5406..55201622928879.2132826-CDS-H-paniculata_contig11700:5406..5520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11700 5407..5520 +
1691480654.5459497-CDS-H-paniculata_contig11700:5406..55201691480654.5459497-CDS-H-paniculata_contig11700:5406..5520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11700 5407..5520 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928879.2246287-UTR-H-paniculata_contig11700:5520..59411622928879.2246287-UTR-H-paniculata_contig11700:5520..5941Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11700 5521..5941 +
1691480654.554139-UTR-H-paniculata_contig11700:5520..59411691480654.554139-UTR-H-paniculata_contig11700:5520..5941Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11700 5521..5941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11700.1089.1

>prot_H-paniculata_contig11700.1089.1 ID=prot_H-paniculata_contig11700.1089.1|Name=mRNA_H-paniculata_contig11700.1089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
GGERGTSRAIREAEEQVNSLKLRIDKKRRRLDVASLERDATKAEYQERVG
GGRRSALKESIAWLEHAKLYLESQQTLQNIPAS*
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mRNA from alignment at H-paniculata_contig11700:2335..5941+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11700.1089.1 ID=mRNA_H-paniculata_contig11700.1089.1|Name=mRNA_H-paniculata_contig11700.1089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3607bp|location=Sequence derived from alignment at H-paniculata_contig11700:2335..5941+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGTGAGCGGGGGACATCGAGGGCTATCCGTGAGGCCGAGGAACAGGT
ACACGGGGCGGGGGCATGCGGAGGGGTGGTCTTTTACAGATGCAAATTTC
GTCACAAAAGGGGATGCTGTGGTGCCGATCATGACTCTATAGCTATGATA
CTGGTGGGATGGGGCTACGGTACTGAACAAATACCAGTGAAAAATGACGA
AATAAAAGAGGGGCATTGGACCTCACAACAACATTACAGCGCGTACGTAA
AAAGGGTAGGACCGCCATTGGATGTTTGTTTGCTGACGAAGGCATTAGCA
TTGATATCAGTTCATCGTCATTTATTGTCTGTTCATCCAGGTATCACCAC
TTGTCAGAATAACGTACACCCACGTTCCTCGGACAGTCGTAAAGACTCGG
ATACGTATATCGTTGTGGAATCCGCGAAACAAGTACCCATCTGTTCAACC
ACCAATATGCGGACAAATAGAAGCGAGGCATAAATAAAAACACCTCGTTA
ACTCTAGGCCGACATTATCCTGTTCTATTTCACCATCGGATAACCAGGTG
AACAGCCTCAAGCTTCGCATCGATAAAAAGCGGCGACGGTTAGACGTGGC
GAGTTTGGAGAGGGACGCCACTAAGGCGGAGTACCAGGCAAGTAAAGCGT
ATAGGCTCAGGCTGGGGTTTCCACAGAGAATGAATTAACTCGACAAAAAG
CTAGCGCGACTGGGGTCATTTGAGTGTTACTTGTTTCAATGGAACCATTG
CACCCTTGGAGAACGTATACTAGCCGTGGTGGCGAATTTTACTGTTATTT
TGTTCCTCACAGGTGTCAATTTCTCCATTTGTTCGAAGCCATGACTCCTC
TCAAGTCAGATGAAGGCTGACATTGACTGGTACGGCACATATTGGTGTGC
CTATCCTACTCAATTTTATCAAAATCGACCTCGATACGAGGTAGCCCTGA
CTCAGACTACTAGTACGTATTAGTACCGTAAGGGGTGTTGGAATACAGAC
ATGTACTGTCTGTTGGTATCTCTCATAGTCCGATTATCGGTCACCAGCTC
AATGCACACGCGGCGAGTTTGGTAACACGGCGAGTTTGGTAACGCGGCGA
GTTTAGTAATACGGTGAGAATATTCCCGCACGGTTTGAGATCGGAGGCTT
GCCCCTCTCTCCTTAGTCTCTTTTGCTTTCCTTGCTTTGGCCACCTAAGC
GCCACTCTTTCAAAACGATCTTTTTTTTCTATACAAGTGTGCTTAACAGC
CACTTCGTGCCGTCTCTGCGGTTCTCTTCAAGACATCAAGACATAATCAA
TCACACTGCCTTCCAACAAGGGGAAGTCAGGGTGTTTTATAGTGTATATC
TACGGCTATCTTTCTTACGGTGATGATCCCGAACGAGTCTCGCGGAAATT
GTTTATCGAAAGCAGAAGATCCAGCTGTCATATTCAATAACCGCTCATTC
ATCTAGTCAGGTACGATAATAACGAGAGCTGAAAGTACACTTGCGATTGT
TCCCCTTGGTATTGATTTATTGTCACTTTGTTATTATTTTATCTCGTCTA
TTGTTTTACGTCCAATGAATAGCTCCGCCCGTCGTTGGCATCTATTTTCT
TCAACGAAATGCAGCAACTAGAGAGGACCTTTCTCCGTATGTAGTTAACG
CCTGATAGAACCACAATGAAGTGCAGGTATCCTGCAAGTGGAGTATTGAC
GTATTGTCATTGTCTACATATTCGTTTTTGTGTTTTTTTTTCACATATAG
TAGAATGATGTTGGCACGTACTGTTTCACGATACACTAATTATCAATGAC
GATAGTGTCGTATGATGGATAGACGTGGCGGCCGCCGTTTGTTGTTTCTC
TTGCGCCTAAAACACAATGTAATGTGGACATACGGAGTGATACTGTAGTA
GAGCGGGGCGATACTGTTATTGCGGGGGCTGTCAAAACCAGTAGAGTTGG
CAAGATGTGCAGATAATTCTCTTCGATGGAGGAGATGTGTAGCTGTTGCT
CTAAGCGTCATTTAGCACAACAACAAGAAGACCTAGCGCATTACTTCTCA
AGCATATGTTCACCTCAACGCACGCTGAGTTCAGAAGAGCGCTAAATTTC
CAAGGCTTTTCACCTAGCCGGCATTACGTTATTTTTCACATGGCCACGTC
CGCGAACCGGTTCGTGGTTGGCGATGTGAAATTTTACCCGGTTCGCGATC
GGTCCTGTGAATTTTTCACTTTTTCCGACCGATTCGCGATCGGTCATGTG
AGAGAGTGCCGGCCATGTGTGTTTCTGTACCAATTGAAGGTCATGAATAT
TTCCGTACCCGAGAGCTTGTCATGAGAACATGTTTGCAGGTTGGCCACAG
GCAGCTGCTCAGTTATCGGCGCGATACAGGACAGTTCGGGACATTTTGTT
TTCCGTTTCGTACGAAAAAAAGTGTCAGTTCGTGTCATTTTTGTTGGGAT
CCTGCACAATCATGTTACATATGTGGAAAAAAATGCCACCTTTCGGGTAA
TTGTCGTTGCGGTTCGGTTTGTTGGCACATGACCTGCAGTGTACACATGA
CCGGCAGTTTACACATGATCACCACAGTTACCACAGTTACACATGACCAG
GTCCGCGAAGTGATTGGTGGTTGGTCATGTGAGGTTTTTACTTTTTACTG
CCGATTCGCGATTGGTCATGTGAAAAAACGCCGTTCATTTGAAAAGCCTT
GTAAATTTCACAGTAAGGCAACATGCTGCACATTTTCGACCCAATAAATT
ATTATCTTGAGAAATGCCTTAGCCGAAAGGATCTGTCTGTAGCATATGAC
ACGTACTCAGTACGTGGTTAATGCGAAATAGTGCCGCTTCAAAGGCCCAT
AAAGCTATCCCGGCGCGCACCTTATCGCAGGTACATCTTAACAAGCCAAA
AATCAACACACCCGTCCCTGTCGTTGCGTTTCTTTGAACTTTAGTATTTC
TCCAAGCTCGCGAAAATGTCACATACCACCTCCTGCCTCTGAAAATGCCT
TAACCCTGCTCGATGAAAACCGCCTACTAACAAGAAAACATTCCCGGGGG
GCGGGGGTATTTTGTTTCGCAGGAGCGGGTCGGCGGCGGTCGGAGGTCCG
CTCTGAAGGAGTCCATCGCCTGGCTGGAGCATGCCAAGTTATATTTGGAA
TCCCAGCAAACCTTGCAGAACATACCAGCCTCATAATAAGTGTGCGAGGC
CAGGGGAGGGGATGCTCGTGTTTTCATTATCGGAGCTGTATCTGTAGATT
ATTCCGCTGTGCATCCTCGAGAAAACGAAGTTGTTCTCCAGGAAGAGCCA
TCATCGATGACCAATCGCACCTTTTAATAGAATTTTGGCGGGTATCCGTT
GGTCTCTACAATAGCCTTGGCCTCTGATATGATCATAGCGATATCAGGGC
TCAATACGAGCGCCCAGCATCATGGATCGTTCAGACACCATTGCGTTAGA
ATAATGATTTAAGTCAAGATATGTGGTTGACATGGAGTGAATTATAACGG
GCTTTGAGCCTATGCTTGTGTAAAATGTATCTTCTAAAACCCAGACTCTG
ATGATACCATAAACCTGTAAGAACCATCCGTTATCCTTTCGAATCCTTGT
ATCGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig11700:2335..5941+

>mRNA_H-paniculata_contig11700.1089.1 ID=mRNA_H-paniculata_contig11700.1089.1|Name=mRNA_H-paniculata_contig11700.1089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig11700:2335..5941+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGTGAGCGGGGGACATCGAGGGCTATCCGTGAGGCCGAGGAACAGGG
TGGTGAGCGGGGGACATCGAGGGCTATCCGTGAGGCCGAGGAACAGGTGA
ACAGCCTCAAGCTTCGCATCGATAAAAAGCGGCGACGGTTAGACGTGGCG
AGTTTGGAGAGGGACGCCACTAAGGCGGAGTACCAGGTGAACAGCCTCAA
GCTTCGCATCGATAAAAAGCGGCGACGGTTAGACGTGGCGAGTTTGGAGA
GGGACGCCACTAAGGCGGAGTACCAGGAGCGGGTCGGCGGCGGTCGGAGG
TCCGCTCTGAAGGAGTCCATCGCCTGGCTGGAGCATGCCAAGTTATATTT
GGAATCCCAGCAAACCTTGCAGAACATACCAGCCTCATAAGAGCGGGTCG
GCGGCGGTCGGAGGTCCGCTCTGAAGGAGTCCATCGCCTGGCTGGAGCAT
GCCAAGTTATATTTGGAATCCCAGCAAACCTTGCAGAACATACCAGCCTC
ATAA
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