prot_H-paniculata_contig4253.10870.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4253.10870.1
Unique Nameprot_H-paniculata_contig4253.10870.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length101
Homology
BLAST of mRNA_H-paniculata_contig4253.10870.1 vs. uniprot
Match: A0A6H5JB99_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB99_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 7.300e-39
Identity = 69/104 (66.35%), Postives = 83/104 (79.81%), Query Frame = 0
Query:    1 MGLKEFMHRKRVLELYRGILKRARTLGDVDITNEARRQFRIGKDETEPLKIKMLLADGMNYLEAMQGSSRG----GAQPGASWLDIVDLEDERGRVGQGFPWER 100
            +GLKEFMHR RVLELYRGILKRAR L D D+ +EARRQF+    ET+PLK++M++AD  N+LEAMQGS+RG    G   G SWLDI D ED+RGRVG+GFPW+R
Sbjct:  111 LGLKEFMHRARVLELYRGILKRARALEDKDVADEARRQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGRGGGDSWLDIHDPEDKRGRVGEGFPWQR 214          
BLAST of mRNA_H-paniculata_contig4253.10870.1 vs. uniprot
Match: D8LRC8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC8_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.020e-34
Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 0
Query:    7 MHRKRVLELYRGILKRARTLGDVDITNEARRQFRIGKDETEPLKIKMLLADGMNYLEAMQGSSRGGAQPGA----SWLDIVDLEDERGRVGQGFPWER 100
            MHR RVLELYRGILKRAR L D D+ +EAR+QF+    ET+PLK++M++AD  N+LEAMQGS+RG    G     SWLDI D ED+RGRVG+GFPW++
Sbjct:    1 MHRARVLELYRGILKRARALEDKDVADEARKQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGGGGDHSWLDIHDPEDKRGRVGKGFPWQQ 98          
BLAST of mRNA_H-paniculata_contig4253.10870.1 vs. uniprot
Match: UPI001C03B48E (LYR motif-containing protein 2 n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C03B48E)

HSP 1 Score: 47.8 bits (112), Expect = 5.670e-5
Identity = 26/70 (37.14%), Postives = 42/70 (60.00%), Query Frame = 0
Query:    1 MGLKEFMHRKRVLELYRGILKRARTLGDVD----ITNEARRQFRIGKDETEPLKIKMLLADGMNYLEAMQ 66
            + LK+F+HR+RVL +YR +L+  R + D      + + AR +FR  KD T    I+M++    N+LE +Q
Sbjct:   11 LSLKQFLHRQRVLGIYRTMLRTIRQVPDEADRKYLKDWAREEFRRNKDATNQDAIRMMITQARNHLETLQ 80          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4253.10870.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JB99_9PHAE7.300e-3966.35Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LRC8_ECTSI1.020e-3462.24Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
UPI001C03B48E5.670e-537.14LYR motif-containing protein 2 n=1 Tax=Melanotaeni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 10..63
e-value: 5.9E-10
score: 39.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4253contigH-paniculata_contig4253:7538..9261 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4253.10870.1mRNA_H-paniculata_contig4253.10870.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4253 3006..9724 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4253.10870.1 ID=prot_H-paniculata_contig4253.10870.1|Name=mRNA_H-paniculata_contig4253.10870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MGLKEFMHRKRVLELYRGILKRARTLGDVDITNEARRQFRIGKDETEPLK
IKMLLADGMNYLEAMQGSSRGGAQPGASWLDIVDLEDERGRVGQGFPWER
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR