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Homology
BLAST of mRNA_H-paniculata_contig4253.10870.1 vs. uniprot
Match: A0A6H5JB99_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB99_9PHAE) HSP 1 Score: 139 bits (350), Expect = 2.030e-35 Identity = 70/105 (66.67%), Postives = 84/105 (80.00%), Query Frame = 1
Query: 481 AMGLKEFMHRKRVLELYRGILKRARTLGDVDITNEARRQFRIGKDETEPLKIKMLLADGMNYLEAMQGSSRG----GAQPGASWLDIVDLEDERGRVGQGFPWER 783
A+GLKEFMHR RVLELYRGILKRAR L D D+ +EARRQF+ ET+PLK++M++AD N+LEAMQGS+RG G G SWLDI D ED+RGRVG+GFPW+R
Sbjct: 110 ALGLKEFMHRARVLELYRGILKRARALEDKDVADEARRQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGRGGGDSWLDIHDPEDKRGRVGEGFPWQR 214
BLAST of mRNA_H-paniculata_contig4253.10870.1 vs. uniprot
Match: D8LRC8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC8_ECTSI) HSP 1 Score: 124 bits (310), Expect = 4.450e-31 Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 1
Query: 502 MHRKRVLELYRGILKRARTLGDVDITNEARRQFRIGKDETEPLKIKMLLADGMNYLEAMQGSSRGGAQPGA----SWLDIVDLEDERGRVGQGFPWER 783
MHR RVLELYRGILKRAR L D D+ +EAR+QF+ ET+PLK++M++AD N+LEAMQGS+RG G SWLDI D ED+RGRVG+GFPW++
Sbjct: 1 MHRARVLELYRGILKRARALEDKDVADEARKQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGGGGDHSWLDIHDPEDKRGRVGKGFPWQQ 98
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Complex 1 LYR protein |
| Ec32 ortholog | Ec-06_003010.1 |
| Exons | 3 |
| Model size | 1249 |
| Cds size | 303 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4253.10870.1 >prot_H-paniculata_contig4253.10870.1 ID=prot_H-paniculata_contig4253.10870.1|Name=mRNA_H-paniculata_contig4253.10870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MGLKEFMHRKRVLELYRGILKRARTLGDVDITNEARRQFRIGKDETEPLK IKMLLADGMNYLEAMQGSSRGGAQPGASWLDIVDLEDERGRVGQGFPWER * back to topmRNA from alignment at H-paniculata_contig4253:3006..9724+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4253.10870.1 ID=mRNA_H-paniculata_contig4253.10870.1|Name=mRNA_H-paniculata_contig4253.10870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6719bp|location=Sequence derived from alignment at H-paniculata_contig4253:3006..9724+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CAGTGCAAAAAAGGTTACACGTTCCCCTTTCAATACTGGTCGCGGTTCTC
GAGAAATCTACAGAAACGGGCACTGGAGTATGACCTACTTGGGGCCCAAA
TCCGTTTTAACCGGATATCTCGACTTCTACTTCCGATATCAAAAGGTGAG
ATGCGTTCTTTTTCGTATTGGCATTTGCAATATCTTCGCAAAGTTTCAGC
GTCTAATTCGTAAAGTTCAGCTGAAAACCACGCCGTTCAAGGAGGGTTCT
CCGGTTTCCAGCCTACAAATAACAGCTGCGTAAGTGGATATCATGCAAAG
TTTGAGCTGAATCTGCCGAAATATACTAAAATTTTGCGAAAATGAGGTAA
ATACCAATATGAAGGTGACATGTGCCCCTTTTCAGTATCGGTCGTAGTTC
TCGAGAAATTCGCAAAAAGTGGTCTCTACACACTTCTGTGTCATATTCCA
GAATCGGATTTTTTAATTTCCAACATTTCTGATCTGAATTTCATTAAGTG
GAGGTTAAAAAGTTTGCACAGATGATGTAAATGGCAATGCGAAGAAGTCT
GGTCGTGCATCTCCAGAAATCCGGTACAAAAGGATATTGGAGGATGACCT
ATTTAAGCCCAAAATATGATTTTGTCGGGTTTGTCGTGATCGACAACCGA
TTTTTAGAAAGAGGAAAAACCCTTATTTTTCTATTGGCATTTACAACATC
TGTTTCAATTTTTTCAAGCCTGCCTTTCGTTAAACTCATTTCAAGAACGT
TCTTCGAGGAACCTTTACGCTTCTTCCTGCCACCCGCTTGTACATGTGGA
GAGCGACTAGAGTACTCGCTGCTAATTGGGGGGCGACATATCTTGCTTTT
TCAGTGCAGCGGCAAGCACTCATGATACTAGATTCTGTGCCAGGGCCGGG
CACCCTACTGCCATCGATATTACCCCTAATCTTCTTCGGCAAATACCGCC
GAGTATAGAGTCGACGAACCGTCAAATTGCCTTCCCACCAAAGACTTGTT
GTGCAAGTTTGCCCTTCCGGACGTCCTGTCTATGAAGAGTGCGGGTATCG
CGAAGATGGATTGCCCAGTGAGAACTGGATAGAGAAGCGACATACAGACG
GACAAAGCACGCAGCTACCACTGTGCTTCTTTTTTGTGTCTGATGCGCTT
ACGCGATAATAATTGTTTTAAAACATGAGAGAGACAAGAACACTGATTTC
CGGTATCCGTGGTTTTATCATTTTTAAAAGTGAGAGAGAGAGGCCCTTTC
AAAGGAGATTACCAAGGCTGGTTTGGAGTGAGATATGTTTACTGTCAGCA
GTTTGTGTCAGAATGGTGGCAGAATTAGCTTCGGGGCAGTCAGTACTTTG
GCGATGACCAATACATTACCGAAGGTAATGACACGCTAATGGCAGTCAAT
CGATTTAACCCCTACAGACTCGGCTGCTTGCGTTGCGACAAATTTGGACA
TGCGATTTTTGAAAGTCCCGCGTCGAAACGAGAGAGACGGTGGAGCTTTT
GGCAAGGGAGGAGTACCGAATGTCGACGGACAGAATTACCATCGCCGGGT
TGAGATTAAATGTCGACACCAGGCCGGCAAAAAAAAAAACTTTTATTTTT
CTCAGGAGGCATTGTTGAAAAACATAATCGGCAGAATCTGGCGGTTATTT
TTTTAGCCAATAATTGGCTGTGCCAACCGAGTGATCTTGGCCGGTGCATC
CAAAAACCAGTGAGGCCGGCGATGCGAGCAGTCACTATGTCGGACTAAAT
GAGTTCCACATTCCCACAAGGACAGCATGAGGCAACTGCCGCATATGCTC
AGACTGTTTAGCGGTGTGACGGTTGAAGTGTTCCCGAATGCATTATGTTA
TTATTGTGAAGCCTTTTTCCAAAAGTAGACACGGGCTGATCACGCCTCCT
TGAAAATATAAGTGCGTTTTTTTCCCGGCCGGTGTCGATCTCTATCCTCA
TCCTGATCGGACTCCGACGAATACTCGGAGGCGTTAGGCGAAGTACTCTC
ATTGTCACTACTTGCGGAAACATCAGACTCCGACTCTGCTTTGCTTGGCC
TCGTCGACAACCTTAGGTTTGCTCATGGTCTAAGCTGAAATAATTTCCCG
GTTGTATTTTGCCTGGGTGCGCTGTGGTGGTTTGGAGGGGTAGGTGGTTG
CGTGTTGCGAAGATGGAAGAAATGGCAAAACCAAAAAAGGATGGTCCCCT
CTTGCAGAGAAAAACAAATGCGTGCAGCCAAATCTCACCATTTTTGTCGC
GAAAATTTCGGTGGGTTGCGGGTGCGTGCATAACCCTTTTAGCGTACGAG
ATGGGGCTAGTTTCCATATCTATACAGGGAAGCGTTTTCTCGTTCTCCGG
TGCACCGGCTTCCCTGCTTTCCCGAAAAAATGGGGAAATAAAACGCCGAG
TGTTATTTTGTGAACCGGTTAACCGAGTAAGCCGGAAAAAACGGAATATC
AGGATGTCGGGTAAACGGTTCTTTCCCAGCCTGTGTCGACCTCTAGTTGA
GATCAGACCTGTTTGTCGACAAGCATATTACGAATATTTAGTACAGCGGG
ATTGCGGCGTGTTTTTGGTTATCAGTATGACTTTGAAAATATCAGGTGTT
CACGTTGGGTATAGATGGGTATCGGCATTTTTTACACTTTTGGCGTTCGT
CGAGGGCTGGTACAGTTGACAGACTGCAGCACACACATTGGTTTCATCGT
GTAGTGGCAGCCCAGCTGGACAGCGCAAACAGCTTACCGCCGTAGAGTTG
CGTACGGGGACAAAATTAACAGACAAAACATTGGATGCAGTACAGTTGGT
GTGCTACTGCGTGCAGCACAATCTGCGGAATATTTCGTCTGTGTCTTAAG
TAAAGTCGATTGGGTTTGGCAGGTTATGTATCCAGATCCCATTTTTTTAA
GGGCTGGAACTCCGAAACCCCTGTGAAGTTTGCGTCTTGCAAATAGGGTA
GTACGGAGGGCATCGTAGCAAGTGTCGTGATTCATGTTCGAAAGGATTTC
CTGTTAGGGTTTCCCTGGGTAACTTCTTTCCGGAGGGCACCACGCAATCC
GTGTACTTCGGTACATGGTGATGCATTTCTGAGAACGAGTCTAAGCCCTA
ACGGGTAGGGCACGGCTAGGGGTAACCCATTGCCGATGACCGGACGCAAG
TGTGATCAAGGGTTTTAACGAGTGAGGATTCTGCTACTCAAAGGGCAGTC
TAAAACCGAGCGTCAACTCGGCCAAGTCTCGTACAACGGCTACCCCACGA
TTCCCTCGGTTCTTGAGCTTAGAACCGAGGGAAGACCGACGTGATCATTA
ACCCGAGTTCTTCGGGGATCTAAATCGGGACTTCGTACTTGATACTTAGT
CGTGGGATTAAGCTCCTTCCCTCACAGCACTTACGAGGTATGTTAACAGA
GGTTGCATATGCCGGGGTGGAAAGGAAAAATCTAAATTGTGATAAGACTC
ATATGCGTTATTCCACAGCTCCTTCCGAGTTGTGTATCAGAATTAATGGT
CCGCTTACGGTTGGGCTAATTTTGACCATTTTTGTGTTTATTTCGATTTT
GAACCTTTTGCTATCGGAAATTTACGAGAAAGGGTAAAATACGACCTTTT
TCGGTCCACTTCATTTTTGCGCCGCGCGTGCACGCGATTGACTTTACCCA
TTTCGGTTAAATGTTTTGGGGATCAACCCCAAAACATGTAAGAGTCTAAC
TGTAAAGATACAATTAATATCGGAGACGCTCAAGTAAGTTCCTCTGCAAA
AAAATTTCAATTAATACTTCTGGCACAGAGGACGTACAACGAAAAGAGAC
GATGAAGAGAGTTGGCGGCAGGCACCAGGACATCCCGATAACTTCATGGC
GAAAAATGGGCGTTGCGTATATAGCATCCTATTATGAGTAACGGTACCCA
TAGGGACAGCAGTTGGCGGTGTGCCACGGTCGTTCCAGTCAGGACATGAC
AATATGATTGATATCTATTGTAGTTGGTCATTAGGCGTTAGGGTTCCTGG
AACAAACTTGTCTCTTTCTGCAAGACTTTTTTTTTTTTCCAAGTTTGAAA
GGATATACTCCGAAATTGCCCCATGTCTACAGGTGGTAAATGCAAAGGCT
TGAAAAATACCCCGCTCGCCTCACCCTGGCAAATCCTACTGATTTGTCGA
GCTTCTCCCCTGCCACCTCTTTTTACCATGCTTTTGTACGGCAGGTGGCG
CTCGGACGCTGCTGCACGAGGTGAAAGGAACCTTCCGAGAAACACCTGTC
AATAACAGCAGCAGCAGTAGTTGTAGCATTAGCAGGGCCTCTTTGTCGAG
GCAGTTGACCTCCTCCTTGTATTTTTCTACACAACCGACGGAGGGGGGAT
CCGACGGGAAACCCAATGGCAACACTGCCGCCTCGGGTCCTATCGGTGGT
GGTGACGTGGTGATAGGGACAAAGGCTAGTCAAGAAGGTGCGCCCGGCGT
GCGGCAGGAGCGTCGGCGGGTAGGTGGCAGTGGCACGAGAAATAGTGGCA
ATATTAGCGGAGGCAGGAAGCTGGCGGGTGCCATGGGATTAAAGGAATTT
ATGCACCGAAAACGCGTGCTGGAACTTTACAGAGGAATACTAAAGGTACG
TGAAGGAGCAGTGTGCAAAGCTAATGTGTTCATTGTATACTGCAGCTCCC
AAGTTCAACAGTCTGTTGCTGCGGTGGTATTGCGTGGCAAGGAAATCGTA
CAAGTAGCCGGCAACGCATTGTAGACCTACGATGGCCGCCATGTAGTTCT
TAGTTGTGGTGAGCTTCTCGTTTCTCTCAAGTTAGCCCCACAATTGCATT
TCGCTGTCCACGCTGTGGGGCGGGTCCATCGTGTTCGAGTTAGCCTTTTT
GCTGGTTCTTGGCTGCTGGCGATCAAGAGGGAGTCAACCCTCTGGTTCGT
TCCTGGGGAAAAAAACACTCGACAGAAGGAAGATGTTATTCCAGGAGGCC
CAACGCCGAAGTACCAATTGTGTACTACTCTACTCTATCACCCGTATTTT
CGTGTTCCGACTACGGCTGTGGCAACCTACCTGCTGCCGCTGGGTCGGTG
GGTACCATCACGCATTAGAGGGCAGCATATACGCAGAGGCTATGGCTCGC
TGAGGGACTCTCGGGAGACGCTGGTGCCTGAAACTTCTTTCCCTCTCCTC
ATTGTGTTGCCATTATTGCAGTATCACCGCGCAGATTGACATGGTTGTAC
GGCAGTACAGACACAAACGGTACTCCATCCGTCCTACTGACTGTCTATTT
CTTCCGTTACCGAGCGCAACTGTGCTGACTGTATTATGCTGTTGGCGCTA
TCCAGTTGGTTGTCACCGTTCGATGTAACCAATGTATGTTACGTAGTCTA
TCAGCTGTACTACCTCCACATCGAGCACATGCCATTGCTGCTGGAGAACA
CCAGCCTCGGGCGTGCAATGGTTTAACATGAGAAATGATGAGATTTGACC
CATTTTGCTCCTGGCGTCACGTGATTGTGTTCTAGTTTTAGTAAAAATTC
ATATGATGTCACGTGATTCTATTCATTTCGTAGTATGCATGTCACATGCG
GGATATCGCCAAGCCCGCAAATGCATTTCGATCAACAAATGTTACGTCCC
CCGCTCTTCAAAATGTACCCCCCCTCCTCATCTTTTGATACGGGACTGTG
AGGTTTCCCGTGTCACAAGGTGTCATACGCCAGGCCCCCAGAAGTCAAAG
GATTGAGTGCAACTCGAATATGAGCTTCTTATACTATGCGTTGACCATGC
AGCATGCCTACACCACATGGTTCTTGAAGACCTGTTACGACATCGCTGAT
GTGTTGGGTCGATCCACCATATCCGCATACTAAAGTATCAGTCGCCCGCC
GCCCCTCCCTGAATACTCAAGTACACCACATTGATTATCCTTCTTCAAAA
ACAAGTAAATCATTCCGATATTTGCTATTTTTTTTCAAATATAAAATATT
TTCCCCTCCCCTGTTTCTTCTTACTCGTTTCGGCGGGGTGGCGGGCGGAC
GCACCTACTATCACAGCGAGCTCGAACGCTGGGAGACGTAGATATTACCA
ACGAAGCTCGCCGACAGTTCCGGATAGGCAAAGACGAGACGGAGCCTCTG
AAGATCAAAATGCTACTTGCGGACGGCATGAACTACCTCGAGGCGATGCA
GGGCTCCTCCAGAGGAGGAGCCCAACCAGGAGCGTCGTGGCTTGATATTG
TTGACCTCGAAGACGAGCGGGGAAGGGTGGGACAAGGATTTCCGTGGGAA
CGCTAGCTTTCCTGTCGAGAGGCGTGTTTGGACGTAATAGAGAGAGTGGT
GGCGGGACCTATTCGTGGAGGAGTACGGTTTGATATAAAGTACCAAACTT
TGCGAAGATTGTTGTATTTGAATTGATTCAATTATACTGCCCGGATGAGC
GTCTGGTCGTGGCGGCGGTGGCGGTGATAGTGGTGTTGGTGGTGTTGGTG
GTGGTGGCGGCATGTGTTGCTGCAGTAAACAACGTGTGGAAACCATTTCC
GAAATTGTTTTCGCGACCAGAGTGGCACGTTCTCTCTCTCTCTCTCTCTC
TTTCTGTATGTGTCTGTGTTCGTGTCTGTGTCTGGCTGTATCCATGCGTT
TTACTCTGAATCGTTTCGCGTTTTTTAGTTCGCAAGCCTATTGGTACGGT
GCTGTCAAGAACATGGAATCCGTGCAAAAAAGCTTCAACTGACGAAATGC
CAAGACTATTACTGTCGTC back to topCoding sequence (CDS) from alignment at H-paniculata_contig4253:3006..9724+ >mRNA_H-paniculata_contig4253.10870.1 ID=mRNA_H-paniculata_contig4253.10870.1|Name=mRNA_H-paniculata_contig4253.10870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig4253:3006..9724+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGGATTAAAGGAATTTATGCACCGAAAACGCGTGCTGGAACTTTACAG AGGAATACTAAAGATGGGATTAAAGGAATTTATGCACCGAAAACGCGTGC TGGAACTTTACAGAGGAATACTAAAGCGAGCTCGAACGCTGGGAGACGTA GATATTACCAACGAAGCTCGCCGACAGTTCCGGATAGGCAAAGACGAGAC GGAGCCTCTGAAGATCAAAATGCTACTTGCGGACGGCATGAACTACCTCG AGGCGATGCAGGGCTCCTCCAGAGGAGGAGCCCAACCAGGAGCGTCGTGG CTTGATATTGTTGACCTCGAAGACGAGCGGGGAAGGGTGGGACAAGGATT TCCGTGGGAACGCTAGCGAGCTCGAACGCTGGGAGACGTAGATATTACCA ACGAAGCTCGCCGACAGTTCCGGATAGGCAAAGACGAGACGGAGCCTCTG AAGATCAAAATGCTACTTGCGGACGGCATGAACTACCTCGAGGCGATGCA GGGCTCCTCCAGAGGAGGAGCCCAACCAGGAGCGTCGTGGCTTGATATTG TTGACCTCGAAGACGAGCGGGGAAGGGTGGGACAAGGATTTCCGTGGGAA CGCTAG back to top
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