prot_H-paniculata_contig4215.10800.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig4215.10800.1
Unique Name	prot_H-paniculata_contig4215.10800.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	115

Homology

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BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: D7FJC4_ECTSI (DNA repair helicase rad5,16, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC4_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 3.000e-46
Identity = 87/125 (69.60%), Postives = 94/125 (75.20%), Query Frame = 0

Query:    2 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAG-----------ATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 115
            DVVLTTYG +SSE+ K EA+  A   T  +              A GLLGVRW RVILDEAHSIRN NT+QSRACL LEA +RWAVTGTPIQNSLDD AALLAFLRHEPWSDRGWWR+VI DPYK
Sbjct:  581 DVVLTTYGVLSSEMAKHEADATARESTAPATXXXXXXXXXXXXPAGGLLGVRWSRVILDEAHSIRNTNTEQSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYK 705

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BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.210e-40
Identity = 71/82 (86.59%), Postives = 74/82 (90.24%), Query Frame = 0

Query:   34 GATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 115
            G  GLLGVRW RVILDEAHSIRN NT+QSRACL LEA +RWAVTGTPIQNSLDD AALLAFLRHEPWSDRGWWR+VI DPYK
Sbjct: 1001 GVGGLLGVRWSRVILDEAHSIRNTNTEQSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYK 1082

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BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: W7T2G0_9STRA (Snf2 family helicase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T2G0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.830e-34
Identity = 64/118 (54.24%), Postives = 79/118 (66.95%), Query Frame = 0

Query:    1 FDVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGAT---GLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 115
            +DVVLTTYGT+  E ++ E       G G          GL GVRW RV+LDEAH+I+N  T+  RA   LEASRRWA+TGTPIQN LDD  +LL FLRH+PW D  WWR+VI +P++
Sbjct:    9 WDVVLTTYGTLQQEHVRWEG------GRGXXXXXXXXXXGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQ 120

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BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A836CF42_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF42_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.310e-31
Identity = 68/125 (54.40%), Postives = 79/125 (63.20%), Query Frame = 0

Query:    1 FDVVLTTYGTVSSELMKKEANCQAAAGT---------------GGSLAGATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVI 110
            +DVVLTTYGT  +EL   E      A                 GG+ A  +GLLG+RWRRVILDEAH+I+N  T+ +RA   L A  RWAVTGTPIQNSL+D  AL+ FLRHEPWSD  WW RVI
Sbjct: 1003 YDVVLTTYGTACAELRAAEGTSGRGAFAAQKASVAEALLHGDGGGTKARVSGLLGLRWRRVILDEAHTIKNATTETARAAFMLRAESRWAVTGTPIQNSLEDLLALVRFLRHEPWSDPVWWNRVI 1127

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BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A4D9CS79_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS79_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.930e-30
Identity = 64/118 (54.24%), Postives = 79/118 (66.95%), Query Frame = 0

Query:    1 FDVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGAT---GLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 115
            +DVVLTTYGT+  E ++ E       G G          GL GVRW RV+LDEAH+I+N  T+  RA   LEASRRWA+TGTPIQN LDD  +LL FLRH+PW D  WWR+VI +P++
Sbjct:  895 WDVVLTTYGTLQQEHVRWEG------GRGXXXXXXXXXXGLFGVRWGRVVLDEAHTIKNQGTEAFRAAYALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVIAEPFQ 1006

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BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A7S4MFN1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MFN1_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.510e-29
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 0

Query:    2 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGD 112
            DVV+TTYGT+ SE +  +        +G +   +T LL   WRR+ILDEAH I+N +T  SRAC  L+  RRW VTGTPIQNSL+DA  LL FLRHEPW + G+WRR + D
Sbjct:  608 DVVVTTYGTLQSEYLASKKR------SGNAAVKSTPLLSHAWRRLILDEAHCIKNPSTAVSRACCSLDGERRWCVTGTPIQNSLEDAYGLLKFLRHEPWCEGGFWRRAVSD 712

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BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A8K1CQ45_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ45_PYTOL)

HSP 1 Score: 118 bits (295), Expect = 1.630e-28
Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 0

Query:    2 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 115
            D+VLTTYG +SSE  K++              G++ LLG  W RVILDEAHSI+N  T   RAC  L+A  RW +TGTPIQNSL D  +LL FLR+EPWS   WW+RVI +P++
Sbjct:  535 DIVLTTYGVLSSEFEKQKN-------------GSSVLLGTEWDRVILDEAHSIKNRATTYFRACAALQAVHRWCLTGTPIQNSLSDLFSLLCFLRYEPWSRVAWWKRVIANPFE 635

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BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A5A8D5B7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5B7_CAFRO)

HSP 1 Score: 114 bits (286), Expect = 2.600e-27
Identity = 62/142 (43.66%), Postives = 83/142 (58.45%), Query Frame = 0

Query:    2 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATG----------------------------LLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 115
            DVV+T+YG V+ E M +    QAAA      A +TG                            + G RWRRV+LDEAH+I+N +TD SR+CL +EA  RWA+TGTP+QNSL D  +L+ F+RH+PW +  WWRRVI  P++
Sbjct:  162 DVVITSYGMVAHE-MHRLGGAQAAADVA-LAAASTGRGXXXXXXXXXXXXXXXXXXXXXXXSAVVYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFE 301

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BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A5A8CAC5_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CAC5_CAFRO)

HSP 1 Score: 114 bits (286), Expect = 2.660e-27
Identity = 62/142 (43.66%), Postives = 83/142 (58.45%), Query Frame = 0

Query:    2 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATG----------------------------LLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 115
            DVV+T+YG V+ E M +    QAAA      A +TG                            + G RWRRV+LDEAH+I+N +TD SR+CL +EA  RWA+TGTP+QNSL D  +L+ F+RH+PW +  WWRRVI  P++
Sbjct:  196 DVVITSYGMVAHE-MHRLGGAQAAADVA-LAAASTGRGXXXXXXXXXXXXXXXXXXXXXXXSAVVYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFE 335

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BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A5A8CW93_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CW93_CAFRO)

HSP 1 Score: 114 bits (284), Expect = 4.870e-27
Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 0

Query:   40 GVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 115
            G RWRRV+LDEAH+I+N +TD SR+CL +EA  RWA+TGTP+QNSL D  +L+ F+RH+PW +  WWRRVI  P++
Sbjct:   57 GARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFE 132

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FJC4_ECTSI	3.000e-46	69.60	DNA repair helicase rad5,16, putative n=1 Tax=Ecto...	[more]
A0A6H5KHD4_9PHAE	1.210e-40	86.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
W7T2G0_9STRA	3.830e-34	54.24	Snf2 family helicase n=1 Tax=Nannochloropsis gadit...	[more]
A0A836CF42_9STRA	1.310e-31	54.40	SNF2 family N-terminal domain-containing protein n...	[more]
A0A4D9CS79_9STRA	2.930e-30	54.24	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]
A0A7S4MFN1_9STRA	2.510e-29	54.05	Hypothetical protein (Fragment) n=1 Tax=Odontella ...	[more]
A0A8K1CQ45_PYTOL	1.630e-28	52.63	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A5A8D5B7_CAFRO	2.600e-27	43.66	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A5A8CAC5_CAFRO	2.660e-27	43.66	Uncharacterized protein n=2 Tax=Cafeteria roenberg...	[more]
A0A5A8CW93_CAFRO	4.870e-27	60.53	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 1..110 e-value: 1.3E-24 score: 88.5
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 2..115 e-value: 8.3E-30 score: 103.7
None	No IPR available	PANTHER	PTHR45626	FAMILY NOT NAMED	coord: 2..114
None	No IPR available	PANTHER	PTHR45626:SF22	DNA REPAIR PROTEIN RAD5	coord: 2..114
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 1..98 score: 12.049
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..114

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig4215	contig	H-paniculata_contig4215:742..1850 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig4215.10800.1	mRNA_H-paniculata_contig4215.10800.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig4215 742..1850 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig4215.10800.1 ID=prot_H-paniculata_contig4215.10800.1|Name=mRNA_H-paniculata_contig4215.10800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
FDVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATGLLGVRWRRVILDE
AHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPW
SDRGWWRRVIGDPYK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR038718	SNF2-like_sf
IPR000330	SNF2_N
IPR014001	Helicase_ATP-bd
IPR027417	P-loop_NTPase