mRNA_H-paniculata_contig4215.10800.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: D7FJC4_ECTSI (DNA repair helicase rad5,16, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC4_ECTSI) HSP 1 Score: 168 bits (425), Expect = 3.000e-46 Identity = 87/125 (69.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query: 4 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAG-----------ATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
DVVLTTYG +SSE+ K EA+ A T + A GLLGVRW RVILDEAHSIRN NT+QSRACL LEA +RWAVTGTPIQNSLDD AALLAFLRHEPWSDRGWWR+VI DPYK
Sbjct: 581 DVVLTTYGVLSSEMAKHEADATARESTAPATXXXXXXXXXXXXPAGGLLGVRWSRVILDEAHSIRNTNTEQSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYK 705
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE) HSP 1 Score: 152 bits (385), Expect = 1.210e-40 Identity = 71/82 (86.59%), Postives = 74/82 (90.24%), Query Frame = 1
Query: 100 GATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
G GLLGVRW RVILDEAHSIRN NT+QSRACL LEA +RWAVTGTPIQNSLDD AALLAFLRHEPWSDRGWWR+VI DPYK
Sbjct: 1001 GVGGLLGVRWSRVILDEAHSIRNTNTEQSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYK 1082
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: W7T2G0_9STRA (Snf2 family helicase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T2G0_9STRA) HSP 1 Score: 123 bits (309), Expect = 3.830e-34 Identity = 64/118 (54.24%), Postives = 79/118 (66.95%), Query Frame = 1
Query: 1 FDVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGAT---GLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
+DVVLTTYGT+ E ++ E G G GL GVRW RV+LDEAH+I+N T+ RA LEASRRWA+TGTPIQN LDD +LL FLRH+PW D WWR+VI +P++
Sbjct: 9 WDVVLTTYGTLQQEHVRWEG------GRGXXXXXXXXXXGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQ 120
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A836CF42_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF42_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.310e-31 Identity = 68/125 (54.40%), Postives = 79/125 (63.20%), Query Frame = 1
Query: 1 FDVVLTTYGTVSSELMKKEANCQAAAGT---------------GGSLAGATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVI 330
+DVVLTTYGT +EL E A GG+ A +GLLG+RWRRVILDEAH+I+N T+ +RA L A RWAVTGTPIQNSL+D AL+ FLRHEPWSD WW RVI
Sbjct: 1003 YDVVLTTYGTACAELRAAEGTSGRGAFAAQKASVAEALLHGDGGGTKARVSGLLGLRWRRVILDEAHTIKNATTETARAAFMLRAESRWAVTGTPIQNSLEDLLALVRFLRHEPWSDPVWWNRVI 1127
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A4D9CS79_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS79_9STRA) HSP 1 Score: 123 bits (308), Expect = 2.930e-30 Identity = 64/118 (54.24%), Postives = 79/118 (66.95%), Query Frame = 1
Query: 1 FDVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGAT---GLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
+DVVLTTYGT+ E ++ E G G GL GVRW RV+LDEAH+I+N T+ RA LEASRRWA+TGTPIQN LDD +LL FLRH+PW D WWR+VI +P++
Sbjct: 895 WDVVLTTYGTLQQEHVRWEG------GRGXXXXXXXXXXGLFGVRWGRVVLDEAHTIKNQGTEAFRAAYALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVIAEPFQ 1006
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A7S4MFN1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MFN1_9STRA) HSP 1 Score: 120 bits (301), Expect = 2.510e-29 Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 1
Query: 4 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGD 336
DVV+TTYGT+ SE + + +G + +T LL WRR+ILDEAH I+N +T SRAC L+ RRW VTGTPIQNSL+DA LL FLRHEPW + G+WRR + D
Sbjct: 608 DVVVTTYGTLQSEYLASKKR------SGNAAVKSTPLLSHAWRRLILDEAHCIKNPSTAVSRACCSLDGERRWCVTGTPIQNSLEDAYGLLKFLRHEPWCEGGFWRRAVSD 712
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A8K1CQ45_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ45_PYTOL) HSP 1 Score: 118 bits (295), Expect = 1.630e-28 Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 1
Query: 4 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
D+VLTTYG +SSE K++ G++ LLG W RVILDEAHSI+N T RAC L+A RW +TGTPIQNSL D +LL FLR+EPWS WW+RVI +P++
Sbjct: 535 DIVLTTYGVLSSEFEKQKN-------------GSSVLLGTEWDRVILDEAHSIKNRATTYFRACAALQAVHRWCLTGTPIQNSLSDLFSLLCFLRYEPWSRVAWWKRVIANPFE 635
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A5A8D5B7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5B7_CAFRO) HSP 1 Score: 114 bits (286), Expect = 2.600e-27 Identity = 62/142 (43.66%), Postives = 83/142 (58.45%), Query Frame = 1
Query: 4 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATG----------------------------LLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
DVV+T+YG V+ E M + QAAA A +TG + G RWRRV+LDEAH+I+N +TD SR+CL +EA RWA+TGTP+QNSL D +L+ F+RH+PW + WWRRVI P++
Sbjct: 162 DVVITSYGMVAHE-MHRLGGAQAAADVA-LAAASTGRGXXXXXXXXXXXXXXXXXXXXXXXSAVVYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFE 301
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A5A8CAC5_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CAC5_CAFRO) HSP 1 Score: 114 bits (286), Expect = 2.660e-27 Identity = 62/142 (43.66%), Postives = 83/142 (58.45%), Query Frame = 1
Query: 4 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATG----------------------------LLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
DVV+T+YG V+ E M + QAAA A +TG + G RWRRV+LDEAH+I+N +TD SR+CL +EA RWA+TGTP+QNSL D +L+ F+RH+PW + WWRRVI P++
Sbjct: 196 DVVITSYGMVAHE-MHRLGGAQAAADVA-LAAASTGRGXXXXXXXXXXXXXXXXXXXXXXXSAVVYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFE 335
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A5A8CW93_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CW93_CAFRO) HSP 1 Score: 114 bits (284), Expect = 4.870e-27 Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 1
Query: 118 GVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
G RWRRV+LDEAH+I+N +TD SR+CL +EA RWA+TGTP+QNSL D +L+ F+RH+PW + WWRRVI P++
Sbjct: 57 GARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFE 132 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4215.10800.1 >prot_H-paniculata_contig4215.10800.1 ID=prot_H-paniculata_contig4215.10800.1|Name=mRNA_H-paniculata_contig4215.10800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp FDVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATGLLGVRWRRVILDEback to top mRNA from alignment at H-paniculata_contig4215:742..1850+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4215.10800.1 ID=mRNA_H-paniculata_contig4215.10800.1|Name=mRNA_H-paniculata_contig4215.10800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1109bp|location=Sequence derived from alignment at H-paniculata_contig4215:742..1850+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4215:742..1850+ >mRNA_H-paniculata_contig4215.10800.1 ID=mRNA_H-paniculata_contig4215.10800.1|Name=mRNA_H-paniculata_contig4215.10800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig4215:742..1850+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |