mRNA_H-paniculata_contig4215.10800.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4215.10800.1
Unique NamemRNA_H-paniculata_contig4215.10800.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: D7FJC4_ECTSI (DNA repair helicase rad5,16, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC4_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 3.000e-46
Identity = 87/125 (69.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query:    4 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAG-----------ATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
            DVVLTTYG +SSE+ K EA+  A   T  +              A GLLGVRW RVILDEAHSIRN NT+QSRACL LEA +RWAVTGTPIQNSLDD AALLAFLRHEPWSDRGWWR+VI DPYK
Sbjct:  581 DVVLTTYGVLSSEMAKHEADATARESTAPATXXXXXXXXXXXXPAGGLLGVRWSRVILDEAHSIRNTNTEQSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYK 705          
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.210e-40
Identity = 71/82 (86.59%), Postives = 74/82 (90.24%), Query Frame = 1
Query:  100 GATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
            G  GLLGVRW RVILDEAHSIRN NT+QSRACL LEA +RWAVTGTPIQNSLDD AALLAFLRHEPWSDRGWWR+VI DPYK
Sbjct: 1001 GVGGLLGVRWSRVILDEAHSIRNTNTEQSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYK 1082          
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: W7T2G0_9STRA (Snf2 family helicase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T2G0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.830e-34
Identity = 64/118 (54.24%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    1 FDVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGAT---GLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
            +DVVLTTYGT+  E ++ E       G G          GL GVRW RV+LDEAH+I+N  T+  RA   LEASRRWA+TGTPIQN LDD  +LL FLRH+PW D  WWR+VI +P++
Sbjct:    9 WDVVLTTYGTLQQEHVRWEG------GRGXXXXXXXXXXGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQ 120          
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A836CF42_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF42_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.310e-31
Identity = 68/125 (54.40%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    1 FDVVLTTYGTVSSELMKKEANCQAAAGT---------------GGSLAGATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVI 330
            +DVVLTTYGT  +EL   E      A                 GG+ A  +GLLG+RWRRVILDEAH+I+N  T+ +RA   L A  RWAVTGTPIQNSL+D  AL+ FLRHEPWSD  WW RVI
Sbjct: 1003 YDVVLTTYGTACAELRAAEGTSGRGAFAAQKASVAEALLHGDGGGTKARVSGLLGLRWRRVILDEAHTIKNATTETARAAFMLRAESRWAVTGTPIQNSLEDLLALVRFLRHEPWSDPVWWNRVI 1127          
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A4D9CS79_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS79_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.930e-30
Identity = 64/118 (54.24%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    1 FDVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGAT---GLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
            +DVVLTTYGT+  E ++ E       G G          GL GVRW RV+LDEAH+I+N  T+  RA   LEASRRWA+TGTPIQN LDD  +LL FLRH+PW D  WWR+VI +P++
Sbjct:  895 WDVVLTTYGTLQQEHVRWEG------GRGXXXXXXXXXXGLFGVRWGRVVLDEAHTIKNQGTEAFRAAYALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVIAEPFQ 1006          
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A7S4MFN1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MFN1_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.510e-29
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    4 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGD 336
            DVV+TTYGT+ SE +  +        +G +   +T LL   WRR+ILDEAH I+N +T  SRAC  L+  RRW VTGTPIQNSL+DA  LL FLRHEPW + G+WRR + D
Sbjct:  608 DVVVTTYGTLQSEYLASKKR------SGNAAVKSTPLLSHAWRRLILDEAHCIKNPSTAVSRACCSLDGERRWCVTGTPIQNSLEDAYGLLKFLRHEPWCEGGFWRRAVSD 712          
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A8K1CQ45_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ45_PYTOL)

HSP 1 Score: 118 bits (295), Expect = 1.630e-28
Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 1
Query:    4 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATGLLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
            D+VLTTYG +SSE  K++              G++ LLG  W RVILDEAHSI+N  T   RAC  L+A  RW +TGTPIQNSL D  +LL FLR+EPWS   WW+RVI +P++
Sbjct:  535 DIVLTTYGVLSSEFEKQKN-------------GSSVLLGTEWDRVILDEAHSIKNRATTYFRACAALQAVHRWCLTGTPIQNSLSDLFSLLCFLRYEPWSRVAWWKRVIANPFE 635          
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A5A8D5B7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5B7_CAFRO)

HSP 1 Score: 114 bits (286), Expect = 2.600e-27
Identity = 62/142 (43.66%), Postives = 83/142 (58.45%), Query Frame = 1
Query:    4 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATG----------------------------LLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
            DVV+T+YG V+ E M +    QAAA      A +TG                            + G RWRRV+LDEAH+I+N +TD SR+CL +EA  RWA+TGTP+QNSL D  +L+ F+RH+PW +  WWRRVI  P++
Sbjct:  162 DVVITSYGMVAHE-MHRLGGAQAAADVA-LAAASTGRGXXXXXXXXXXXXXXXXXXXXXXXSAVVYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFE 301          
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A5A8CAC5_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CAC5_CAFRO)

HSP 1 Score: 114 bits (286), Expect = 2.660e-27
Identity = 62/142 (43.66%), Postives = 83/142 (58.45%), Query Frame = 1
Query:    4 DVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATG----------------------------LLGVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
            DVV+T+YG V+ E M +    QAAA      A +TG                            + G RWRRV+LDEAH+I+N +TD SR+CL +EA  RWA+TGTP+QNSL D  +L+ F+RH+PW +  WWRRVI  P++
Sbjct:  196 DVVITSYGMVAHE-MHRLGGAQAAADVA-LAAASTGRGXXXXXXXXXXXXXXXXXXXXXXXSAVVYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFE 335          
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Match: A0A5A8CW93_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CW93_CAFRO)

HSP 1 Score: 114 bits (284), Expect = 4.870e-27
Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  118 GVRWRRVILDEAHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPWSDRGWWRRVIGDPYK 345
            G RWRRV+LDEAH+I+N +TD SR+CL +EA  RWA+TGTP+QNSL D  +L+ F+RH+PW +  WWRRVI  P++
Sbjct:   57 GARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFE 132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4215.10800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJC4_ECTSI3.000e-4669.60DNA repair helicase rad5,16, putative n=1 Tax=Ecto... [more]
A0A6H5KHD4_9PHAE1.210e-4086.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7T2G0_9STRA3.830e-3454.24Snf2 family helicase n=1 Tax=Nannochloropsis gadit... [more]
A0A836CF42_9STRA1.310e-3154.40SNF2 family N-terminal domain-containing protein n... [more]
A0A4D9CS79_9STRA2.930e-3054.24Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S4MFN1_9STRA2.510e-2954.05Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A8K1CQ45_PYTOL1.630e-2852.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5A8D5B7_CAFRO2.600e-2743.66Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CAC5_CAFRO2.660e-2743.66Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A5A8CW93_CAFRO4.870e-2760.53Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4215contigH-paniculata_contig4215:742..1850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue7.1e-40
Seed eggNOG ortholog2880.D7FJC4
KEGG koko:K15173,ko:K15711
KEGG Pathwayko04918,map04918
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
EC2.3.2.27
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03400,ko04121
Exons3
Model size345
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4215.10800.1prot_H-paniculata_contig4215.10800.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4215 742..1850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930282.5155702-CDS-H-paniculata_contig4215:741..8451622930282.5155702-CDS-H-paniculata_contig4215:741..845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 742..845 +
1691481224.1507614-CDS-H-paniculata_contig4215:741..8451691481224.1507614-CDS-H-paniculata_contig4215:741..845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 742..845 +
1622930282.5298843-CDS-H-paniculata_contig4215:1342..14211622930282.5298843-CDS-H-paniculata_contig4215:1342..1421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 1343..1421 +
1691481224.1637425-CDS-H-paniculata_contig4215:1342..14211691481224.1637425-CDS-H-paniculata_contig4215:1342..1421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 1343..1421 +
1622930282.5509336-CDS-H-paniculata_contig4215:1688..18501622930282.5509336-CDS-H-paniculata_contig4215:1688..1850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 1689..1850 +
1691481224.1819904-CDS-H-paniculata_contig4215:1688..18501691481224.1819904-CDS-H-paniculata_contig4215:1688..1850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 1689..1850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4215.10800.1

>prot_H-paniculata_contig4215.10800.1 ID=prot_H-paniculata_contig4215.10800.1|Name=mRNA_H-paniculata_contig4215.10800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
FDVVLTTYGTVSSELMKKEANCQAAAGTGGSLAGATGLLGVRWRRVILDE
AHSIRNINTDQSRACLELEASRRWAVTGTPIQNSLDDAAALLAFLRHEPW
SDRGWWRRVIGDPYK
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mRNA from alignment at H-paniculata_contig4215:742..1850+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4215.10800.1 ID=mRNA_H-paniculata_contig4215.10800.1|Name=mRNA_H-paniculata_contig4215.10800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1109bp|location=Sequence derived from alignment at H-paniculata_contig4215:742..1850+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGACGTAGTCTTGACCACCTACGGCACGGTGTCCAGCGAATTGATGAA AAAGGAGGCAAATTGCCAAGCGGCCGCCGGCACCGGCGGCTCACTAGCAG GTGCGTCTTGGCATGTACGTACTTATAGTACGCCTGTGCGGTTCCGGCGG GCTCCCCTCTCGCGCACGGGGTCGGGTTGCCTGTTGTGTTCGTTTTGCTG CTTACGTGGAACTTCTTTCCTTGACTTGGGTTATTTGGTCGTTGAATATA ATTTTCTTCTTGTCCTTGAAAGAGTGTTACTTGGTCCCCACTTGATTATT AGCATGGGGTATTGGTCGCAAAAGCAACCGCCAGCCAAAGTTTTAGTTTT TATTTATCATACAACACTACATACTGCTGCTTGAAGAGTACAGAGCTTGT TGTGTAGCATGTGCCGTAAATTTCTGCAATAGAAGCGTTCTGATGCCACA CACCACCGCTGTTTATGAGCCACCCGCCTGAGAGCGTACAGGGGACGTGA TGCGCTGGCCGCCAAATTATCCCGCCGACACAATATTTTTCATTCCGTAA CCCCCGATCGAGATCAGGCAGAGGGATACCCGGCGAGAAAAAAAGGCCGA GGACCGGGCTCTTGGGGGTGCGGTGGCGGAGGGTTATTTTGGACGAGGCG CACTCCATCCGCAATATCAACACCGATCAGGTGAGTCTGAAGGAGATGCA TAGATGGATGAGGGGGGGGTTAGTCGTGTGAGAGATTTGGGCAGTGATTT ACAGCTAAACTTGAACTTGGAGCAGGCGCCACTGCATGAGTGTTTCTTGT AGTGAGAATTTTTTTTTCTGTAAAAAACTGTGTACATACGTAGAACAGGT AAAGTTTGAAAATCAACAGTTGCAAAATTCAATTTTTATTTTTGTGTTTT CAATAGATTGTATCCACACCTGCGCTCTCTATGGTCTTTTTGATCAGTCG CGGGCTTGTCTAGAGCTGGAGGCAAGTCGGCGGTGGGCCGTTACGGGAAC CCCGATTCAGAACAGCCTCGACGACGCTGCGGCGCTGCTTGCGTTCCTTA GGCACGAGCCGTGGAGCGACCGCGGGTGGTGGCGAAGGGTTATCGGAGAC CCATACAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4215:742..1850+

>mRNA_H-paniculata_contig4215.10800.1 ID=mRNA_H-paniculata_contig4215.10800.1|Name=mRNA_H-paniculata_contig4215.10800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig4215:742..1850+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGACGTAGTCTTGACCACCTACGGCACGGTGTCCAGCGAATTGATGAA
AAAGGAGGCAAATTGCCAAGCGGCCGCCGGCACCGGCGGCTCACTAGCAG
GTGCTTCGACGTAGTCTTGACCACCTACGGCACGGTGTCCAGCGAATTGA
TGAAAAAGGAGGCAAATTGCCAAGCGGCCGCCGGCACCGGCGGCTCACTA
GCAGGTGCGACCGGGCTCTTGGGGGTGCGGTGGCGGAGGGTTATTTTGGA
CGAGGCGCACTCCATCCGCAATATCAACACCGATCAGGACCGGGCTCTTG
GGGGTGCGGTGGCGGAGGGTTATTTTGGACGAGGCGCACTCCATCCGCAA
TATCAACACCGATCAGTCGCGGGCTTGTCTAGAGCTGGAGGCAAGTCGGC
GGTGGGCCGTTACGGGAACCCCGATTCAGAACAGCCTCGACGACGCTGCG
GCGCTGCTTGCGTTCCTTAGGCACGAGCCGTGGAGCGACCGCGGGTGGTG
GCGAAGGGTTATCGGAGACCCATACAAGTCGCGGGCTTGTCTAGAGCTGG
AGGCAAGTCGGCGGTGGGCCGTTACGGGAACCCCGATTCAGAACAGCCTC
GACGACGCTGCGGCGCTGCTTGCGTTCCTTAGGCACGAGCCGTGGAGCGA
CCGCGGGTGGTGGCGAAGGGTTATCGGAGACCCATACAAG
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