mRNA_H-paniculata_contig42059.10781.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE) HSP 1 Score: 249 bits (637), Expect = 1.710e-77 Identity = 115/207 (55.56%), Postives = 154/207 (74.40%), Query Frame = 1
Query: 1 GFTVDGRIAEDESIESFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQW--------TDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
GFT+DG++ +++ ES+VDKC++VEG P T++G V+S+LIG V++G ++NCG EC+R++NFVTNA I +N IE CGIYD+RF D K GEA+Y+GTSS QW T+GPDGSN+NL++GN + P GNECVD+KEGAT NV++ N+C +Q D SGC+ SRG+ NTFRYN C GAGIRLGG +DG YG++N V
Sbjct: 119 GFTIDGQLDDEDVEESYVDKCIFVEGQAAPTMLTHQGQEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAVQCLGAGIRLGGHTIDGFVYGVDNHV 325
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI) HSP 1 Score: 250 bits (639), Expect = 4.200e-76 Identity = 116/207 (56.04%), Postives = 151/207 (72.95%), Query Frame = 1
Query: 1 GFTVDGRIAEDESIESFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDG--------PDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
GFT+DG+I + + +SFVDKC++VEG P Y G +V+++LIG V++ ++NCG EC+R++NFVTN I+DN IE CGIYDYR+T D K GEA+Y+GTSS QW DG PDG N+NL++GN + P GNECVD+KEGAT NV++ N C +Q D SGC+ SRG+ NTFRYN NC G GIRLGG E+DG TYG++N V
Sbjct: 165 GFTIDGQIDDADHEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNTVIIDNDIEDCGIYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRYNTAENCLGGGIRLGGHEIDGITYGVDNHV 371
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE) HSP 1 Score: 234 bits (598), Expect = 5.420e-74 Identity = 107/199 (53.77%), Postives = 140/199 (70.35%), Query Frame = 1
Query: 1 GFTVDGRIAEDESIESFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
GF+VDG+I++D+ ES+VDKCV+VEG S L GFV++ V+NCG ECVRLK+F+ A I DN I+ CG+ D+ + + KNGE +YVGTSSTQW+DGPD N N I+GN + P GNECVD+KEG+TG +++ N C Q+D SGCFGSRG GN FRYN ++C G G+R+GGWEVDG YG +N +
Sbjct: 93 GFSVDGKISDDDEAESYVDKCVFVEG---------TSTSGDERLEGFVMQDVYVQNCGDECVRLKSFIVGAVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQWSDGPDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYNTASDCLGVGVRIGGWEVDGHKYGQDNSI 282
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI) HSP 1 Score: 241 bits (614), Expect = 7.000e-74 Identity = 117/200 (58.50%), Postives = 146/200 (73.00%), Query Frame = 1
Query: 1 GFTVDGRIAEDESIE-SFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
GFTV+G+I ++ E S+V+KCVYVEG G+ + L GFV+E V+NCGGECVRLK+ V NA+++ NTI CG++DY F KNGE VY+GTSSTQWT+G D N NL+SGN + GNECVD+KEGA+GNVI++N C EQ+D SGC+ SRG GNTFRYN GT+C GAG+RLGGWEVDG YG+ N V
Sbjct: 119 GFTVEGKIGTSDTDEASWVNKCVYVEG---------PGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVINAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQWTNGEDTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWEVDGHQYGVGNSV 309
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI) HSP 1 Score: 235 bits (599), Expect = 1.580e-73 Identity = 111/200 (55.50%), Postives = 147/200 (73.50%), Query Frame = 1
Query: 1 GFTVDGRIAEDESIE-SFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
GF+V+G+I +++ + S+V+KCVYVEG GA+ + L GFV+E V+NCGGECVRLK+ V NA++ NTI CG++DY F + KNGE VY+GTSSTQWT+G D N N++S N++ GNECVD+KEG++GNVI++N C +Q+D SGC+ SRG GNTFRYN G+ C GAG+RLGGWEVDG YG+ N V
Sbjct: 119 GFSVEGKIGSNDTDQASWVNKCVYVEG---------PGANSSAVLDGFVMEDMVVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQWTNGEDTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRYNVGSECTGAGVRLGGWEVDGHQYGVNNSV 309
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: D8LJ29_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ29_ECTSI) HSP 1 Score: 215 bits (547), Expect = 1.930e-66 Identity = 100/174 (57.47%), Postives = 130/174 (74.71%), Query Frame = 1
Query: 100 TYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQW--------TDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
T++G V+S+LIG V++G ++NCG EC+R++NFVTNA I +N IE CGIYD+RF D K GEA+Y+GTSS QW T+GPDGSN+NL++GN + P GNECVD+KEGAT NV++ N+C +Q D SGC+ SRG+ NTFRYN C GAGIRLGG +DG YG++N V
Sbjct: 3 THQGLEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNELVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAIQCLGAGIRLGGHTIDGFVYGVDNHV 176
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI) HSP 1 Score: 211 bits (536), Expect = 2.220e-62 Identity = 106/200 (53.00%), Postives = 137/200 (68.50%), Query Frame = 1
Query: 1 GFTVDGRIAEDESIESFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDGP-DGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
GFTV+G+I + + +S+V C+YV+G G+ + L GFV+E V+NCGGECVRLK+ VTNA+I NTI CGI+DY F NG+ V +GTSS +W DG D +NL++GNV+ NECVDVKEGA GNVI++N C Q+D SGC+ SRG+ N FR NAG++C GAG+RLGGWEVDG YG+ N V
Sbjct: 81 GFTVEGQIGTEVTEDSYVLNCIYVQG---------PGSDSSTFLDGFVMEEMAVQNCGGECVRLKDGVTNAKIFSNTITNCGIHDYMFESGDMNGQGVCIGTSSDEWPDGEEDVCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFRNNAGSDCLGAGVRLGGWEVDGFQYGVGNSV 271
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55) HSP 1 Score: 187 bits (476), Expect = 4.970e-55 Identity = 98/204 (48.04%), Postives = 125/204 (61.27%), Query Frame = 1
Query: 4 FTVDGRIAEDESIESFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDG------PDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
FT+DG++ ++E F D VYV+G +P + GFV+ +++N GGECVRL+ +VT A I DNT CG+YD++F + KNGEA+YVGTSS QW DG PD SNHN I N GNECVD+KEGA N+++ N C Q DP S F SRG N FRYN + GAG+RLGG VDG YG+ N+V
Sbjct: 125 FTIDGQVGSGNTMEDFRDILVYVKG-NEP----------QQGPTGFVMRAMSLKNAGGECVRLRYYVTEAEIFDNTFYNCGVYDFKFNNGGKNGEAIYVGTSSNQWDDGKNPTGGPDPSNHNWIHHNKFLTNGNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYNVSHDNKGAGVRLGGNTVDGRQYGVNNQV 317
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE) HSP 1 Score: 189 bits (479), Expect = 1.090e-54 Identity = 92/170 (54.12%), Postives = 120/170 (70.59%), Query Frame = 1
Query: 1 GFTVDGRIAEDESIE-SFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFR 507
GFTV+G++ ++ E S+V+KCVYVEG G+ + L GFV+E V+NCGGECVRLK+ V NA++ NTI CG++D+ F KNGE VY+GTSSTQWT+G D N NL+ GN + GNECVD+KEGA+GNV++NN C +Q+D SGC+ SRG GNTFR
Sbjct: 119 GFTVEGKVGTSDTDEASWVNKCVYVEG---------PGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDFMFNSGDKNGEGVYIGTSSTQWTNGEDTCNDNLVFGNRISTSGNECVDIKEGASGNVVENNICSDQLDAESGCYDSRGDGNTFR 279
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: Q6XM06_9PHYC (FirrV-1-B30 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM06_9PHYC) HSP 1 Score: 191 bits (485), Expect = 7.600e-54 Identity = 97/204 (47.55%), Postives = 125/204 (61.27%), Query Frame = 1
Query: 1 GFTVDGRIAEDESIESFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDG------PDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENE 594
GFTV G+ +VDKC++V G P G +SS+ G ++E V +CGGEC+RL++FVT+A + N IE CG +DY F KNGEA+YVGTSS QW DG PD + + I NV+ NECVDVKEG+T +++ N C Q+D S F SR TFRYN +NCAGAGIR+GG ++DG TYG NE
Sbjct: 116 GFTVSGKRNSGNDPSDYVDKCIFVMGISSPEIERTSGIEYESSITGVIIEDMEVEDCGGECIRLRSFVTHAEVTGNRIERCGRHDYLFDGAGKNGEAIYVGTSSNQWNDGKNSKSGPDKTKYIWIHDNVIDTQANECVDVKEGSTDVLVEYNACSNQLDTNSAGFDSRTDDVTFRYNEVSNCAGAGIRIGGHKIDGKTYGENNE 319 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig42059.10781.1 >prot_H-paniculata_contig42059.10781.1 ID=prot_H-paniculata_contig42059.10781.1|Name=mRNA_H-paniculata_contig42059.10781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp GFTVDGRIAEDESIESFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEback to top mRNA from alignment at H-paniculata_contig42059:75..1749+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig42059.10781.1 ID=mRNA_H-paniculata_contig42059.10781.1|Name=mRNA_H-paniculata_contig42059.10781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1675bp|location=Sequence derived from alignment at H-paniculata_contig42059:75..1749+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig42059:75..1749+ >mRNA_H-paniculata_contig42059.10781.1 ID=mRNA_H-paniculata_contig42059.10781.1|Name=mRNA_H-paniculata_contig42059.10781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig42059:75..1749+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |