mRNA_H-paniculata_contig42059.10781.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42059.10781.1
Unique NamemRNA_H-paniculata_contig42059.10781.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.710e-77
Identity = 115/207 (55.56%), Postives = 154/207 (74.40%), Query Frame = 1
Query:    1 GFTVDGRIAEDESIESFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQW--------TDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
            GFT+DG++ +++  ES+VDKC++VEG   P   T++G  V+S+LIG V++G  ++NCG EC+R++NFVTNA I +N IE CGIYD+RF  D K GEA+Y+GTSS QW        T+GPDGSN+NL++GN + P GNECVD+KEGAT NV++ N+C +Q D  SGC+ SRG+ NTFRYN    C GAGIRLGG  +DG  YG++N V
Sbjct:  119 GFTIDGQLDDEDVEESYVDKCIFVEGQAAPTMLTHQGQEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAVQCLGAGIRLGGHTIDGFVYGVDNHV 325          
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 4.200e-76
Identity = 116/207 (56.04%), Postives = 151/207 (72.95%), Query Frame = 1
Query:    1 GFTVDGRIAEDESIESFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDG--------PDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
            GFT+DG+I + +  +SFVDKC++VEG   P    Y G +V+++LIG V++   ++NCG EC+R++NFVTN  I+DN IE CGIYDYR+T D K GEA+Y+GTSS QW DG        PDG N+NL++GN + P GNECVD+KEGAT NV++ N C +Q D  SGC+ SRG+ NTFRYN   NC G GIRLGG E+DG TYG++N V
Sbjct:  165 GFTIDGQIDDADHEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNTVIIDNDIEDCGIYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRYNTAENCLGGGIRLGGHEIDGITYGVDNHV 371          
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 5.420e-74
Identity = 107/199 (53.77%), Postives = 140/199 (70.35%), Query Frame = 1
Query:    1 GFTVDGRIAEDESIESFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
            GF+VDG+I++D+  ES+VDKCV+VEG            S    L GFV++   V+NCG ECVRLK+F+  A I DN I+ CG+ D+ + +  KNGE +YVGTSSTQW+DGPD  N N I+GN + P GNECVD+KEG+TG +++ N C  Q+D  SGCFGSRG GN FRYN  ++C G G+R+GGWEVDG  YG +N +
Sbjct:   93 GFSVDGKISDDDEAESYVDKCVFVEG---------TSTSGDERLEGFVMQDVYVQNCGDECVRLKSFIVGAVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQWSDGPDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYNTASDCLGVGVRIGGWEVDGHKYGQDNSI 282          
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 7.000e-74
Identity = 117/200 (58.50%), Postives = 146/200 (73.00%), Query Frame = 1
Query:    1 GFTVDGRIAEDESIE-SFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
            GFTV+G+I   ++ E S+V+KCVYVEG          G+   + L GFV+E   V+NCGGECVRLK+ V NA+++ NTI  CG++DY F    KNGE VY+GTSSTQWT+G D  N NL+SGN +   GNECVD+KEGA+GNVI++N C EQ+D  SGC+ SRG GNTFRYN GT+C GAG+RLGGWEVDG  YG+ N V
Sbjct:  119 GFTVEGKIGTSDTDEASWVNKCVYVEG---------PGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVINAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQWTNGEDTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWEVDGHQYGVGNSV 309          
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 1.580e-73
Identity = 111/200 (55.50%), Postives = 147/200 (73.50%), Query Frame = 1
Query:    1 GFTVDGRIAEDESIE-SFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
            GF+V+G+I  +++ + S+V+KCVYVEG          GA+  + L GFV+E   V+NCGGECVRLK+ V NA++  NTI  CG++DY F  + KNGE VY+GTSSTQWT+G D  N N++S N++   GNECVD+KEG++GNVI++N C +Q+D  SGC+ SRG GNTFRYN G+ C GAG+RLGGWEVDG  YG+ N V
Sbjct:  119 GFSVEGKIGSNDTDQASWVNKCVYVEG---------PGANSSAVLDGFVMEDMVVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQWTNGEDTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRYNVGSECTGAGVRLGGWEVDGHQYGVNNSV 309          
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: D8LJ29_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ29_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 1.930e-66
Identity = 100/174 (57.47%), Postives = 130/174 (74.71%), Query Frame = 1
Query:  100 TYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQW--------TDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
            T++G  V+S+LIG V++G  ++NCG EC+R++NFVTNA I +N IE CGIYD+RF  D K GEA+Y+GTSS QW        T+GPDGSN+NL++GN + P GNECVD+KEGAT NV++ N+C +Q D  SGC+ SRG+ NTFRYN    C GAGIRLGG  +DG  YG++N V
Sbjct:    3 THQGLEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNELVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAIQCLGAGIRLGGHTIDGFVYGVDNHV 176          
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 2.220e-62
Identity = 106/200 (53.00%), Postives = 137/200 (68.50%), Query Frame = 1
Query:    1 GFTVDGRIAEDESIESFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDGP-DGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
            GFTV+G+I  + + +S+V  C+YV+G          G+   + L GFV+E   V+NCGGECVRLK+ VTNA+I  NTI  CGI+DY F     NG+ V +GTSS +W DG  D   +NL++GNV+    NECVDVKEGA GNVI++N C  Q+D  SGC+ SRG+ N FR NAG++C GAG+RLGGWEVDG  YG+ N V
Sbjct:   81 GFTVEGQIGTEVTEDSYVLNCIYVQG---------PGSDSSTFLDGFVMEEMAVQNCGGECVRLKDGVTNAKIFSNTITNCGIHDYMFESGDMNGQGVCIGTSSDEWPDGEEDVCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFRNNAGSDCLGAGVRLGGWEVDGFQYGVGNSV 271          
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55)

HSP 1 Score: 187 bits (476), Expect = 4.970e-55
Identity = 98/204 (48.04%), Postives = 125/204 (61.27%), Query Frame = 1
Query:    4 FTVDGRIAEDESIESFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDG------PDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV 597
            FT+DG++    ++E F D  VYV+G  +P          +    GFV+   +++N GGECVRL+ +VT A I DNT   CG+YD++F +  KNGEA+YVGTSS QW DG      PD SNHN I  N     GNECVD+KEGA  N+++ N C  Q DP S  F SRG  N FRYN   +  GAG+RLGG  VDG  YG+ N+V
Sbjct:  125 FTIDGQVGSGNTMEDFRDILVYVKG-NEP----------QQGPTGFVMRAMSLKNAGGECVRLRYYVTEAEIFDNTFYNCGVYDFKFNNGGKNGEAIYVGTSSNQWDDGKNPTGGPDPSNHNWIHHNKFLTNGNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYNVSHDNKGAGVRLGGNTVDGRQYGVNNQV 317          
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.090e-54
Identity = 92/170 (54.12%), Postives = 120/170 (70.59%), Query Frame = 1
Query:    1 GFTVDGRIAEDESIE-SFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFR 507
            GFTV+G++   ++ E S+V+KCVYVEG          G+   + L GFV+E   V+NCGGECVRLK+ V NA++  NTI  CG++D+ F    KNGE VY+GTSSTQWT+G D  N NL+ GN +   GNECVD+KEGA+GNV++NN C +Q+D  SGC+ SRG GNTFR
Sbjct:  119 GFTVEGKVGTSDTDEASWVNKCVYVEG---------PGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDFMFNSGDKNGEGVYIGTSSTQWTNGEDTCNDNLVFGNRISTSGNECVDIKEGASGNVVENNICSDQLDAESGCYDSRGDGNTFR 279          
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Match: Q6XM06_9PHYC (FirrV-1-B30 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM06_9PHYC)

HSP 1 Score: 191 bits (485), Expect = 7.600e-54
Identity = 97/204 (47.55%), Postives = 125/204 (61.27%), Query Frame = 1
Query:    1 GFTVDGRIAEDESIESFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLEGTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYVGTSSTQWTDG------PDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGEQMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENE 594
            GFTV G+         +VDKC++V G   P      G   +SS+ G ++E   V +CGGEC+RL++FVT+A +  N IE CG +DY F    KNGEA+YVGTSS QW DG      PD + +  I  NV+    NECVDVKEG+T  +++ N C  Q+D  S  F SR    TFRYN  +NCAGAGIR+GG ++DG TYG  NE
Sbjct:  116 GFTVSGKRNSGNDPSDYVDKCIFVMGISSPEIERTSGIEYESSITGVIIEDMEVEDCGGECIRLRSFVTHAEVTGNRIERCGRHDYLFDGAGKNGEAIYVGTSSNQWNDGKNSKSGPDKTKYIWIHDNVIDTQANECVDVKEGSTDVLVEYNACSNQLDTNSAGFDSRTDDVTFRYNEVSNCAGAGIRIGGHKIDGKTYGENNE 319          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42059.10781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1D2_9PHAE1.710e-7755.56Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
D8LJ42_ECTSI4.200e-7656.04FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KT05_9PHAE5.420e-7453.77Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
D7FXR8_ECTSI7.000e-7458.50FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FXR9_ECTSI1.580e-7355.50FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LJ29_ECTSI1.930e-6657.47FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FZD2_ECTSI2.220e-6253.00FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
UPI00036AEC554.970e-5548.04right-handed parallel beta-helix repeat-containing... [more]
A0A6H5LEX7_9PHAE1.090e-5454.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q6XM06_9PHYC7.600e-5447.55FirrV-1-B30 n=1 Tax=Feldmannia irregularis virus a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42059contigH-paniculata_contig42059:75..1749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score191.4
Seed ortholog evalue4e-46
Seed eggNOG ortholog1121935.AQXX01000136_gene4114
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1NHJ7@1224,1SHNB@1236,COG3420@1,COG3420@2
COG Functional cat.P
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons4
Model size597
Cds size597
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42059.10781.1prot_H-paniculata_contig42059.10781.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42059 75..1749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930279.78322-CDS-H-paniculata_contig42059:74..2471622930279.78322-CDS-H-paniculata_contig42059:74..247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42059 75..247 +
1691481222.9564383-CDS-H-paniculata_contig42059:74..2471691481222.9564383-CDS-H-paniculata_contig42059:74..247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42059 75..247 +
1622930279.8014781-CDS-H-paniculata_contig42059:682..8271622930279.8014781-CDS-H-paniculata_contig42059:682..827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42059 683..827 +
1691481222.9770656-CDS-H-paniculata_contig42059:682..8271691481222.9770656-CDS-H-paniculata_contig42059:682..827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42059 683..827 +
1622930279.8187764-CDS-H-paniculata_contig42059:1064..12521622930279.8187764-CDS-H-paniculata_contig42059:1064..1252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42059 1065..1252 +
1691481222.9893782-CDS-H-paniculata_contig42059:1064..12521691481222.9893782-CDS-H-paniculata_contig42059:1064..1252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42059 1065..1252 +
1622930279.8378665-CDS-H-paniculata_contig42059:1658..17491622930279.8378665-CDS-H-paniculata_contig42059:1658..1749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42059 1659..1749 +
1691481223.0000403-CDS-H-paniculata_contig42059:1658..17491691481223.0000403-CDS-H-paniculata_contig42059:1658..1749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42059 1659..1749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42059.10781.1

>prot_H-paniculata_contig42059.10781.1 ID=prot_H-paniculata_contig42059.10781.1|Name=mRNA_H-paniculata_contig42059.10781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
GFTVDGRIAEDESIESFVDKCVYVEGYGDPITHTYRGASVKSSLIGFVLE
GTTVRNCGGECVRLKNFVTNARILDNTIEFCGIYDYRFTHDAKNGEAVYV
GTSSTQWTDGPDGSNHNLISGNVMKPFGNECVDVKEGATGNVIQNNQCGE
QMDPLSGCFGSRGSGNTFRYNAGTNCAGAGIRLGGWEVDGTTYGIENEV
back to top

mRNA from alignment at H-paniculata_contig42059:75..1749+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42059.10781.1 ID=mRNA_H-paniculata_contig42059.10781.1|Name=mRNA_H-paniculata_contig42059.10781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1675bp|location=Sequence derived from alignment at H-paniculata_contig42059:75..1749+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTTACCGTCGACGGACGTATAGCCGAGGACGAATCAATCGAATCCTT CGTTGACAAATGCGTGTACGTGGAAGGCTATGGCGACCCGATCACCCACA CATACCGTGGGGCCTCCGTGAAGAGCTCTCTAATCGGCTTCGTCCTGGAA GGAACGACCGTCAGGAACTGCGGGTACGCTACTGTGCTACATCCGTTCAG TAATAATAGGGAAATCTACTGGTGGTATAAGTACAATGTACGCAGTCTCG AGTGCTTGTATTCCCATGACCGATGCTTGGTTCTTGGGCCTGCGTGACTT TGGTATATGGTGCACTACTCAAGCGTACATCGTTCGGCGAACGCTCGAGA CTACGACCGATCTCGAGATGTAGTACGGCTTTATCTCGAAAGTATGTGAG TCCAGTGGGACCTTTACTGCTGAAACAATCGGATGGTAAAAGGAAACAAG TTCCCCAACCATGCATATGGATCCTAACTGAACCAGTCGCTCACGTGCTT AGGTGTTGGAAAATTGCGTTAAAATACGGTATGGCTTCGCCGCTGATTTC TGAAGGACGGCTCCTCTTTGGCTCGGCTGTGCCCACACGCTAATAAAATA ACTTGCAGGGGGGAGTGCGTGCGTCTGAAGAACTTCGTGACGAACGCGAG AATCCTGGATAACACCATCGAGTTCTGTGGCATATACGACTACCGCTTCA CGCACGACGCGAAAAACGGCGAAGCTGTCTACGTCGGTACTTCCAGCACT CAGGTGCGTCATCCGACGTGGCGTCTAAACTGAATCACATCGTATGTAGC GAGAGCCACTACAACACCGAAATAGGTATCCCCGACCCTCTGGTCTATAG ACATTCCACATCTCGAATTGTCCCTTGTACTCTGAAACCGGGCGAGGTAC TCTCAGTAGAATGAATGCACTTGCCTCTTTCGCCCGTGAATATTTAGCTC CACTCGATTCCTTTTTTTCACGGTCCGTTGTGCCTGACAGTGGACCGACG GTCCAGACGGCAGCAATCACAACTTGATCAGCGGGAACGTCATGAAGCCC TTCGGGAACGAGTGCGTCGACGTGAAAGAAGGGGCCACGGGCAACGTCAT CCAAAACAACCAATGCGGCGAGCAAATGGACCCTCTCTCCGGCTGCTTTG GGTCGAGGGGCAGCGGCAACACATTCAGGTATGTTCGGTCTTTCAGGGTT TACTCGCTTCTGGCTCGAATCGGCCGCATTTGTGACCTTTCTATAACCCC CGTAGACAGCCAGGAGAACATCTGTGTTGACATGTTTCCCTTCTCACAAA GGCTCGTCGGGCGACGTGTTAATCAACGTGTTGAAACGTACAGTTTTGCT ATTGCGGTACTCGTGCGATGTTTGTAGCCTTTTTATGGATTGGTCGTTCG TGCGCAGTGTATAAACGTTGAAACATTGAACGTTTACAGATAGTATCCCG TGAACAGACACACGATTTTCTAGCACTTTCTTGTTCAGGTGATTGGTGGG TAATTTCGAGCCTTGGTTTCAAGTTGCTGTTCTCCAAATACTTCTGTAAT TCGTCTCTTTTTTTTTGCCACTGATTTTCGCCAGGTACAACGCCGGCACA AACTGCGCTGGGGCCGGGATTCGCTTGGGTGGGTGGGAAGTGGACGGGAC CACCTACGGTATCGAAAATGAAGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig42059:75..1749+

>mRNA_H-paniculata_contig42059.10781.1 ID=mRNA_H-paniculata_contig42059.10781.1|Name=mRNA_H-paniculata_contig42059.10781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig42059:75..1749+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTTACCGTCGACGGACGTATAGCCGAGGACGAATCAATCGAATCCTT
CGTTGACAAATGCGTGTACGTGGAAGGCTATGGCGACCCGATCACCCACA
CATACCGTGGGGCCTCCGTGAAGAGCTCTCTAATCGGCTTCGTCCTGGAA
GGAACGACCGTCAGGAACTGCGGGGATTTACCGTCGACGGACGTATAGCC
GAGGACGAATCAATCGAATCCTTCGTTGACAAATGCGTGTACGTGGAAGG
CTATGGCGACCCGATCACCCACACATACCGTGGGGCCTCCGTGAAGAGCT
CTCTAATCGGCTTCGTCCTGGAAGGAACGACCGTCAGGAACTGCGGGGGG
GAGTGCGTGCGTCTGAAGAACTTCGTGACGAACGCGAGAATCCTGGATAA
CACCATCGAGTTCTGTGGCATATACGACTACCGCTTCACGCACGACGCGA
AAAACGGCGAAGCTGTCTACGTCGGTACTTCCAGCACTCAGGGGGGAGTG
CGTGCGTCTGAAGAACTTCGTGACGAACGCGAGAATCCTGGATAACACCA
TCGAGTTCTGTGGCATATACGACTACCGCTTCACGCACGACGCGAAAAAC
GGCGAAGCTGTCTACGTCGGTACTTCCAGCACTCAGTGGACCGACGGTCC
AGACGGCAGCAATCACAACTTGATCAGCGGGAACGTCATGAAGCCCTTCG
GGAACGAGTGCGTCGACGTGAAAGAAGGGGCCACGGGCAACGTCATCCAA
AACAACCAATGCGGCGAGCAAATGGACCCTCTCTCCGGCTGCTTTGGGTC
GAGGGGCAGCGGCAACACATTCAGTGGACCGACGGTCCAGACGGCAGCAA
TCACAACTTGATCAGCGGGAACGTCATGAAGCCCTTCGGGAACGAGTGCG
TCGACGTGAAAGAAGGGGCCACGGGCAACGTCATCCAAAACAACCAATGC
GGCGAGCAAATGGACCCTCTCTCCGGCTGCTTTGGGTCGAGGGGCAGCGG
CAACACATTCAGGTACAACGCCGGCACAAACTGCGCTGGGGCCGGGATTC
GCTTGGGTGGGTGGGAAGTGGACGGGACCACCTACGGTATCGAAAATGAA
GTGGTACAACGCCGGCACAAACTGCGCTGGGGCCGGGATTCGCTTGGGTG
GGTGGGAAGTGGACGGGACCACCTACGGTATCGAAAATGAAGTG
back to top