mRNA_H-paniculata_contig11683.1077.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11683.1077.1
Unique NamemRNA_H-paniculata_contig11683.1077.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: D7FY65_ECTSI (AAA_12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY65_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 8.890e-24
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRDRGGEMWRSVVDHY 213
            VD+CQGSDADV+++STVRS G   KLSGF+ D RRVNVA+SRA+EECIIVGD    R  GG MWRSV DH+
Sbjct:  620 VDSCQGSDADVVVISTVRSGGVGYKLSGFMTDRRRVNVAISRAKEECIIVGDKHTLRSGGGAMWRSVADHF 690          
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: A0A7S0DU52_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DU52_9CRYP)

HSP 1 Score: 65.1 bits (157), Expect = 6.450e-11
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRDRGGEMWRSVVDHY 213
            VD+ QG +A+V+I+S VRSC G     GFL D RRVNVA+SRAR+  I++GD +       ++W+S++ +Y
Sbjct:   79 VDSMQGREAEVVILSCVRSCAGGGV--GFLADRRRVNVAVSRARQALIVMGDEQALTQN--KLWKSILSYY 145          
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: A0A7S0GNV1_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GNV1_MICPS)

HSP 1 Score: 66.2 bits (160), Expect = 1.130e-10
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRDRGGEMWRSV 201
            VDACQGS+ D +++ST R+     +  GF+ D RR+NVA+SRA+ +C+I+GD R    R G  W +V
Sbjct:  149 VDACQGSEFDFVLISTTRA--NDRRAVGFVSDPRRINVAISRAKRQCVILGDARTMAGRPGTDWHAV 213          
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: E1ZLN5_CHLVA (Expressed protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZLN5_CHLVA)

HSP 1 Score: 65.5 bits (158), Expect = 2.190e-10
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    1 VDACQGSDADVIIVSTVRS--CGGHPK-LSGFLLDCRRVNVALSRAREECIIVGDHRIFRDRGGEMWRSVVDHY 213
            +DACQG +AD ++VSTVR+  CG   + LS F  D RRVNVA+SRAR  C++VG     R      W +V+  Y
Sbjct:  672 IDACQGDEADAVVVSTVRNAFCGSENQHLSSFFRDRRRVNVAMSRARHLCVVVGSLYTLRLPKARPWSAVLADY 745          
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: A0A2P6VHN8_9CHLO (Putative ATP-dependent helicase-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VHN8_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 3.440e-9
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    1 VDACQGSDADVIIVSTVRSCGGHP----KLSGFLLDCRRVNVALSRAREECIIVGDHRIFRDRGGEMWRSVVDHYA 216
            VDACQG + D +IVSTVR+          LS F  D RR+NVA+SRAR  C++VG+ R       + W +V+  Y+
Sbjct:  205 VDACQGDEVDAVIVSTVRNVFNSNCKSLNLSKFFRDRRRINVAMSRARYMCVVVGNKRTLNVPKAKPWGAVLTGYS 280          
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: J0M328_HELPX (Helicase n=2 Tax=Helicobacter pylori TaxID=210 RepID=J0M328_HELPX)

HSP 1 Score: 58.2 bits (139), Expect = 3.630e-9
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRD 174
            VDA QG +AD+II STV++CG       FLLD +R+NVA+SRA+E  I VG    F +
Sbjct:   21 VDAFQGEEADIIIYSTVKTCGNL----SFLLDSKRLNVAISRAKENLIFVGKKSFFEN 74          
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: M3PWZ5_HELPX (AAA_12 domain-containing protein n=2 Tax=Helicobacter pylori TaxID=210 RepID=M3PWZ5_HELPX)

HSP 1 Score: 58.2 bits (139), Expect = 3.720e-9
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRD 174
            VDA QG +AD+II STV++CG       FLLD +R+NVA+SRA+E  I VG    F +
Sbjct:   17 VDAFQGEEADIIIYSTVKTCGNL----SFLLDSKRLNVAISRAKENLIFVGKKSFFEN 70          
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: A0A0L0PKV2_HELPX (Helicase n=2 Tax=Helicobacter pylori TaxID=210 RepID=A0A0L0PKV2_HELPX)

HSP 1 Score: 58.2 bits (139), Expect = 4.090e-9
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRD 174
            VDA QG +AD+II STV++CG       FLLD +R+NVA+SRA+E  I VG    F +
Sbjct:   21 VDAFQGEEADIIIYSTVKTCGNL----SFLLDSKRLNVAISRAKENLIFVGKKSFFEN 74          
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: J0L492_HELPX (Helicase n=9 Tax=Helicobacter pylori TaxID=210 RepID=J0L492_HELPX)

HSP 1 Score: 58.2 bits (139), Expect = 4.090e-9
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRD 174
            VDA QG +AD+II STV++CG       FLLD +R+NVA+SRA+E  I VG    F +
Sbjct:   21 VDAFQGEEADIIIYSTVKTCGNL----SFLLDSKRLNVAISRAKENLIFVGKKSFFEN 74          
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: A0A293SNG7_HELPX (Helicase n=2 Tax=Helicobacter pylori TaxID=210 RepID=A0A293SNG7_HELPX)

HSP 1 Score: 58.2 bits (139), Expect = 4.090e-9
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRD 174
            VDA QG +AD+II STV++CG       FLLD +R+NVA+SRA+E  I VG    F +
Sbjct:   21 VDAFQGEEADIIIYSTVKTCGNL----SFLLDSKRLNVAISRAKENLIFVGKKSFFEN 74          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY65_ECTSI8.890e-2469.01AAA_12 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S0DU52_9CRYP6.450e-1146.48Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S0GNV1_MICPS1.130e-1046.27Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
E1ZLN5_CHLVA2.190e-1047.30Expressed protein n=1 Tax=Chlorella variabilis Tax... [more]
A0A2P6VHN8_9CHLO3.440e-943.42Putative ATP-dependent helicase-like n=1 Tax=Micra... [more]
J0M328_HELPX3.630e-951.72Helicase n=2 Tax=Helicobacter pylori TaxID=210 Rep... [more]
M3PWZ5_HELPX3.720e-951.72AAA_12 domain-containing protein n=2 Tax=Helicobac... [more]
A0A0L0PKV2_HELPX4.090e-951.72Helicase n=2 Tax=Helicobacter pylori TaxID=210 Rep... [more]
J0L492_HELPX4.090e-951.72Helicase n=9 Tax=Helicobacter pylori TaxID=210 Rep... [more]
A0A293SNG7_HELPX4.090e-951.72Helicase n=2 Tax=Helicobacter pylori TaxID=210 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11683contigH-paniculata_contig11683:168..446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue2.3e-20
Seed eggNOG ortholog2880.D7FY65
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsCOG1112@1,KOG1802@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928876.526259-CDS-H-paniculata_contig11683:167..4461622928876.526259-CDS-H-paniculata_contig11683:167..446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11683 168..446 +
1691480653.4539142-CDS-H-paniculata_contig11683:167..4461691480653.4539142-CDS-H-paniculata_contig11683:167..446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11683 168..446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11683.1077.1prot_H-paniculata_contig11683.1077.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11683 168..446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11683.1077.1

>prot_H-paniculata_contig11683.1077.1 ID=prot_H-paniculata_contig11683.1077.1|Name=mRNA_H-paniculata_contig11683.1077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIV
GDHRIFRDRGGEMWRSVVDHYAPSSEAMSRESYVGGLLSASRL
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mRNA from alignment at H-paniculata_contig11683:168..446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11683.1077.1 ID=mRNA_H-paniculata_contig11683.1077.1|Name=mRNA_H-paniculata_contig11683.1077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig11683:168..446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGACGCTTGCCAGGGATCAGATGCGGACGTAATCATTGTCTCGACCGT TCGCAGTTGTGGCGGCCACCCCAAACTTTCCGGCTTTTTGCTGGACTGTC GCCGGGTCAATGTCGCCCTCTCCAGGGCACGGGAGGAATGCATCATCGTC GGCGACCATCGCATATTCCGCGACAGGGGCGGGGAAATGTGGCGCTCGGT GGTGGACCACTACGCGCCGAGCTCAGAAGCCATGTCACGAGAGTCCTATG TGGGTGGTCTACTCTCGGCGTCCAGGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig11683:168..446+

>mRNA_H-paniculata_contig11683.1077.1 ID=mRNA_H-paniculata_contig11683.1077.1|Name=mRNA_H-paniculata_contig11683.1077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig11683:168..446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGACGCTTGCCAGGGATCAGATGCGGACGTAATCATTGTCTCGACCGT
TCGCAGTTGTGGCGGCCACCCCAAACTTTCCGGCTTTTTGCTGGACTGTC
GCCGGGTCAATGTCGCCCTCTCCAGGGCACGGGAGGAATGCATCATCGTC
GGCGACCATCGCATATTCCGCGACAGGGGCGGGGAAATGTGGCGCTCGGT
GGTGGACCACTACGCGCCGAGCTCAGAAGCCATGTCACGAGAGTCCTATG
TGGGTGGTCTACTCTCGGCGTCCAGGTTGGTGGACGCTTGCCAGGGATCA
GATGCGGACGTAATCATTGTCTCGACCGTTCGCAGTTGTGGCGGCCACCC
CAAACTTTCCGGCTTTTTGCTGGACTGTCGCCGGGTCAATGTCGCCCTCT
CCAGGGCACGGGAGGAATGCATCATCGTCGGCGACCATCGCATATTCCGC
GACAGGGGCGGGGAAATGTGGCGCTCGGTGGTGGACCACTACGCGCCGAG
CTCAGAAGCCATGTCACGAGAGTCCTATGTGGGTGGTCTACTCTCGGCGT
CCAGGTTG
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