mRNA_H-paniculata_contig11683.1077.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: D7FY65_ECTSI (AAA_12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY65_ECTSI) HSP 1 Score: 103 bits (257), Expect = 8.890e-24 Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 1 Query: 1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRDRGGEMWRSVVDHY 213 VD+CQGSDADV+++STVRS G KLSGF+ D RRVNVA+SRA+EECIIVGD R GG MWRSV DH+ Sbjct: 620 VDSCQGSDADVVVISTVRSGGVGYKLSGFMTDRRRVNVAISRAKEECIIVGDKHTLRSGGGAMWRSVADHF 690
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: A0A7S0DU52_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DU52_9CRYP) HSP 1 Score: 65.1 bits (157), Expect = 6.450e-11 Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 1 Query: 1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRDRGGEMWRSVVDHY 213 VD+ QG +A+V+I+S VRSC G GFL D RRVNVA+SRAR+ I++GD + ++W+S++ +Y Sbjct: 79 VDSMQGREAEVVILSCVRSCAGGGV--GFLADRRRVNVAVSRARQALIVMGDEQALTQN--KLWKSILSYY 145
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: A0A7S0GNV1_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GNV1_MICPS) HSP 1 Score: 66.2 bits (160), Expect = 1.130e-10 Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 1 Query: 1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRDRGGEMWRSV 201 VDACQGS+ D +++ST R+ + GF+ D RR+NVA+SRA+ +C+I+GD R R G W +V Sbjct: 149 VDACQGSEFDFVLISTTRA--NDRRAVGFVSDPRRINVAISRAKRQCVILGDARTMAGRPGTDWHAV 213
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: E1ZLN5_CHLVA (Expressed protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZLN5_CHLVA) HSP 1 Score: 65.5 bits (158), Expect = 2.190e-10 Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 1 Query: 1 VDACQGSDADVIIVSTVRS--CGGHPK-LSGFLLDCRRVNVALSRAREECIIVGDHRIFRDRGGEMWRSVVDHY 213 +DACQG +AD ++VSTVR+ CG + LS F D RRVNVA+SRAR C++VG R W +V+ Y Sbjct: 672 IDACQGDEADAVVVSTVRNAFCGSENQHLSSFFRDRRRVNVAMSRARHLCVVVGSLYTLRLPKARPWSAVLADY 745
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: A0A2P6VHN8_9CHLO (Putative ATP-dependent helicase-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VHN8_9CHLO) HSP 1 Score: 61.6 bits (148), Expect = 3.440e-9 Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1 Query: 1 VDACQGSDADVIIVSTVRSCGGHP----KLSGFLLDCRRVNVALSRAREECIIVGDHRIFRDRGGEMWRSVVDHYA 216 VDACQG + D +IVSTVR+ LS F D RR+NVA+SRAR C++VG+ R + W +V+ Y+ Sbjct: 205 VDACQGDEVDAVIVSTVRNVFNSNCKSLNLSKFFRDRRRINVAMSRARYMCVVVGNKRTLNVPKAKPWGAVLTGYS 280
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: J0M328_HELPX (Helicase n=2 Tax=Helicobacter pylori TaxID=210 RepID=J0M328_HELPX) HSP 1 Score: 58.2 bits (139), Expect = 3.630e-9 Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 Query: 1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRD 174 VDA QG +AD+II STV++CG FLLD +R+NVA+SRA+E I VG F + Sbjct: 21 VDAFQGEEADIIIYSTVKTCGNL----SFLLDSKRLNVAISRAKENLIFVGKKSFFEN 74
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: M3PWZ5_HELPX (AAA_12 domain-containing protein n=2 Tax=Helicobacter pylori TaxID=210 RepID=M3PWZ5_HELPX) HSP 1 Score: 58.2 bits (139), Expect = 3.720e-9 Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 Query: 1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRD 174 VDA QG +AD+II STV++CG FLLD +R+NVA+SRA+E I VG F + Sbjct: 17 VDAFQGEEADIIIYSTVKTCGNL----SFLLDSKRLNVAISRAKENLIFVGKKSFFEN 70
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: A0A0L0PKV2_HELPX (Helicase n=2 Tax=Helicobacter pylori TaxID=210 RepID=A0A0L0PKV2_HELPX) HSP 1 Score: 58.2 bits (139), Expect = 4.090e-9 Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 Query: 1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRD 174 VDA QG +AD+II STV++CG FLLD +R+NVA+SRA+E I VG F + Sbjct: 21 VDAFQGEEADIIIYSTVKTCGNL----SFLLDSKRLNVAISRAKENLIFVGKKSFFEN 74
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: J0L492_HELPX (Helicase n=9 Tax=Helicobacter pylori TaxID=210 RepID=J0L492_HELPX) HSP 1 Score: 58.2 bits (139), Expect = 4.090e-9 Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 Query: 1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRD 174 VDA QG +AD+II STV++CG FLLD +R+NVA+SRA+E I VG F + Sbjct: 21 VDAFQGEEADIIIYSTVKTCGNL----SFLLDSKRLNVAISRAKENLIFVGKKSFFEN 74
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Match: A0A293SNG7_HELPX (Helicase n=2 Tax=Helicobacter pylori TaxID=210 RepID=A0A293SNG7_HELPX) HSP 1 Score: 58.2 bits (139), Expect = 4.090e-9 Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 Query: 1 VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVGDHRIFRD 174 VDA QG +AD+II STV++CG FLLD +R+NVA+SRA+E I VG F + Sbjct: 21 VDAFQGEEADIIIYSTVKTCGNL----SFLLDSKRLNVAISRAKENLIFVGKKSFFEN 74 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11683.1077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11683.1077.1 >prot_H-paniculata_contig11683.1077.1 ID=prot_H-paniculata_contig11683.1077.1|Name=mRNA_H-paniculata_contig11683.1077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp VDACQGSDADVIIVSTVRSCGGHPKLSGFLLDCRRVNVALSRAREECIIVback to top mRNA from alignment at H-paniculata_contig11683:168..446+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11683.1077.1 ID=mRNA_H-paniculata_contig11683.1077.1|Name=mRNA_H-paniculata_contig11683.1077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig11683:168..446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11683:168..446+ >mRNA_H-paniculata_contig11683.1077.1 ID=mRNA_H-paniculata_contig11683.1077.1|Name=mRNA_H-paniculata_contig11683.1077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig11683:168..446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |