mRNA_H-paniculata_contig1168.1073.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1168.1073.1 vs. uniprot
Match: A0A6H5KBW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW2_9PHAE) HSP 1 Score: 420 bits (1079), Expect = 6.520e-134 Identity = 204/368 (55.43%), Postives = 280/368 (76.09%), Query Frame = 1
Query: 1 PSWNIMTICTVGGVLFFNAITRQLEIYAHGNKQSKELLESVYRELSVLGIVAFVIWSIQSSSYLALDYDVKHFFEVVHMTLFLAAIFHSFFVVLVSLYSKQVSKRWDVYEDDEMKRYKELKQQHRRTAQALGLRHSTLKRGVGPLRQMWMWIRHPALSRRLYQLSENVSYHAMRSHFIKMNQLPRNFRFSVYLKKCEQEVVIEMAEIKESVWVGFILAVGIELYIKGLFGEAESGDDVRILFLISAGLVLIAALGVHFKLGKIYRALLYSYTTSTDRREDFMQFLSPDANALFRQQDMFWFGQPEIMPIMLQSMQFLLATMVAVLVWFGTGHDEMTDVVVVGEIVLAVGALGIYTVVLPSFIPAFTMV 1104
PSWNI+ ICTVGGVLFF I Q+ A G + +++LLE++YREL++LG+VAF++WSI S + ++Y KHFFE +HM LFLAA+ H+FFV +V+LY++Q+++RWD++EDDEM+RYK+LKQQHRRTAQ LG+RH+ LK G+G R W+ +RHP LSRRL +LSE+V YHA+R+ FIK NQLP+NFRF+ YL KCEQ VV+E+A +KE VWV IL VG EL++KG+ G+AES +DV+ +F+ +V++AA+ VH KL IY ++ SY T+RR+D MQF+ P + RQ+ +FWF +P +M + LQSMQFLLA MV L+WFG+ + T V+++ E+ L VGA GIYT+VLP FIP +T V
Sbjct: 39 PSWNIVVICTVGGVLFFELICHQMNHAAEGKRHAQDLLETLYRELAILGVVAFILWSINVSPAVDIEYGDKHFFEQIHMALFLAALLHTFFVGVVALYARQINRRWDIFEDDEMRRYKDLKQQHRRTAQKLGIRHADLKYGIGTWRAAWLTVRHPILSRRLSELSEHVGYHAIRAQFIKSNQLPKNFRFASYLTKCEQSVVLELAGVKEGVWVALILFVGAELFVKGILGKAESSEDVKPIFITGTIIVMLAAIAVHLKLRSIYYDMIRSY--HTERRDDLMQFVGPSTSNTMRQKSLFWFSRPGLMLVTLQSMQFLLAIMVGALIWFGS--TDSTGVMILAEVFLGVGAFGIYTIVLPKFIPKYTTV 402
BLAST of mRNA_H-paniculata_contig1168.1073.1 vs. uniprot
Match: D7FXU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU3_ECTSI) HSP 1 Score: 420 bits (1079), Expect = 8.180e-134 Identity = 202/368 (54.89%), Postives = 279/368 (75.82%), Query Frame = 1
Query: 1 PSWNIMTICTVGGVLFFNAITRQLEIYAHGNKQSKELLESVYRELSVLGIVAFVIWSIQSSSYLALDYDVKHFFEVVHMTLFLAAIFHSFFVVLVSLYSKQVSKRWDVYEDDEMKRYKELKQQHRRTAQALGLRHSTLKRGVGPLRQMWMWIRHPALSRRLYQLSENVSYHAMRSHFIKMNQLPRNFRFSVYLKKCEQEVVIEMAEIKESVWVGFILAVGIELYIKGLFGEAESGDDVRILFLISAGLVLIAALGVHFKLGKIYRALLYSYTTSTDRREDFMQFLSPDANALFRQQDMFWFGQPEIMPIMLQSMQFLLATMVAVLVWFGTGHDEMTDVVVVGEIVLAVGALGIYTVVLPSFIPAFTMV 1104
PSWNI+ ICTVGGVLFF I Q+ A G + +++LLE++YREL++LG+VAF++WSI S + ++Y KHFFE +HM LFLAA+ H+FFV +V+LY++Q+++RWD++EDDEM+RYK+LKQQHRRTAQ LG+R + LK G+G R W+ +RHP L RRL +LSE+V YHA+R+ FIK NQLP+NFRF+ YL KCEQ VV+E+A +KE VWV IL VG EL++KG+ G+AES +DV+ +F+ +V++AA+ VH KL IY ++ SY ST+RR+D MQF+ P + RQ+ +FWF +P +M + LQSMQFLLA MV L+WFG+ + T ++++ E+ L VGA GIYT+VLP FIP +T V
Sbjct: 47 PSWNIVVICTVGGVLFFELICHQMNHAAEGKRHAQDLLETLYRELAILGVVAFILWSINVSPAVDIEYGDKHFFEQIHMALFLAALLHTFFVGVVALYARQINRRWDIFEDDEMRRYKDLKQQHRRTAQKLGIRQADLKYGIGTWRAAWLTVRHPILFRRLSELSEHVGYHAIRAQFIKSNQLPKNFRFASYLTKCEQSVVLELAGVKEGVWVALILFVGAELFVKGILGKAESSEDVKPIFITGTVIVMLAAIAVHLKLRSIYYDMIRSYQASTERRDDLMQFVGPGTSNTMRQKSLFWFSRPGLMLVTLQSMQFLLAIMVGALIWFGS--TDSTGLMILAEVFLGVGAFGIYTIVLPKFIPKYTTV 412
BLAST of mRNA_H-paniculata_contig1168.1073.1 vs. uniprot
Match: A0A7S1TZ75_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZ75_9STRA) HSP 1 Score: 167 bits (422), Expect = 3.300e-42 Identity = 112/369 (30.35%), Postives = 191/369 (51.76%), Query Frame = 1
Query: 10 NIMTICTVGGVLFFNAITRQLEIYAHGNKQSKELLESVYRELSVLGIVAFVIWSIQSSSYLALDYDVKHFFEVVHMTLFLAAIFHSFFVVLVSLYSKQVSKRWDVYE--DDEMKRYKELKQQHRRTAQALGLRHSTLKRGVGPLRQMWMWIRHPALSRRLYQLSENVSYHAMRSHFIKMNQLPRNFRFSVYLKKCEQEVVIEMAEIKESVWVGFILAVGIELYIKGLFGEAESGDDVR-ILFLISAGLVLIAALGVHFKLGKIYRALLYSYTTSTDRREDFMQFLSPDANALFRQQDMFWFGQPEIMPIMLQSMQFLLATMVAVLVWFGTGHDEMTD--VVVVGEIVLAVGALGIYTVVLPSFIPAFTM 1101
++ + T+ GVL T L+ K +E++ +YREL +LGIVAF ++ I+SS + + KH FE VH+TLFL A+ + +V V +S + W YE + +++E+++ A+ +G R G +W ++ HP +L E+V +H +R HFI+ N +P NF F+ YLKKC+Q V++E+ E++ WV + I LY +G+ + G DV ++ +SA ++ AL V+FK+ IY LL+S D + D Q+ +FW G P ++ MLQ +QF+++ +AV + + +D V + I++ AL + +LP +P +T+
Sbjct: 25 KVIGVLTILGVLLIQYGTHSLDKVIEKKKSLREIVNMMYRELMILGIVAFGLFVIESSELVTISDTDKHVFEEVHLTLFLVAVIYGLMIVAVLYFSYAIDNTWKHYEALQNVSGQWQEIRENFDALARQIGAPSGYDARSAGITSHLWRFLAHPVSWMNYKRLLEHVRFHELRQHFIRANHMPGNFAFAGYLKKCKQHVMLELVEVRSGAWVLIAWLLSINLYAEGINEDFLIGADVATVMCTLSACVIAFCAL-VYFKINHIYWCLLHSEFIHFDPNNKQASMRAEDRRG--HQESLFWLGNPSLLIDMLQFIQFVVSVNLAVALQNIDTVRKNSDGGVKLAAMIIMLCLALLSFFALLPVAVPRYTL 390
BLAST of mRNA_H-paniculata_contig1168.1073.1 vs. uniprot
Match: A0A7S2S7M7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7M7_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 7.740e-6 Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = 1
Query: 16 MTICTVGGVLFFNAITRQLEIYAHGNKQSKELLESVYRELSVLGIVAFVIWSIQSSSYLALDYDVKHFFEVVHMTLFLAAIFH 264
+ I T+ GV+ + +L + +E+L +Y+EL +LGIVAF++++I+ + D+KH FE+VHMTLFL A+ +
Sbjct: 44 IAILTIIGVIIVQFVVDKLNHSIQKHLNGREILNMMYKELMILGIVAFLLFAIEIWG--ETEVDLKHEFEMVHMTLFLIALMY 124
BLAST of mRNA_H-paniculata_contig1168.1073.1 vs. uniprot
Match: A0A7S3LEW6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEW6_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 1.420e-5 Identity = 38/133 (28.57%), Postives = 72/133 (54.14%), Query Frame = 1
Query: 16 MTICTVGGVLFFNAITRQLEIYAHGNKQSKELLESVYRELSVLGIVAFVIWSIQSSSYLALDYDVKHFFEVVHMTLFLAAIFHSFFVVLVSLYSKQVSKR-WDVYEDDEMKRYKELKQQHRRTAQALG-LRHS 408
+ + T+G ++ + L+ AHG +LE++Y EL++LG+V F ++ +Q Y + + K F VH LF A+ ++F ++++ +VSK+ W E E+ Y E++++ R LG L+H+
Sbjct: 17 VAVMTLGLIMVVEVVLHNLDHAAHGRPYFTAVLENIYSELAILGLVEFCVFLMQEY-YEDYNKEKKDVFGAVHFALFYTALLNAFQSMILAFAVGRVSKKMWVQTEALELNHYVEIREEFDRVTAELGRLQHT 148 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1168.1073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1168.1073.1 >prot_H-paniculata_contig1168.1073.1 ID=prot_H-paniculata_contig1168.1073.1|Name=mRNA_H-paniculata_contig1168.1073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=363bp MTICTVGGVLFFNAITRQLEIYAHGNKQSKELLESVYRELSVLGIVAFVIback to top mRNA from alignment at H-paniculata_contig1168:393..7519- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1168.1073.1 ID=mRNA_H-paniculata_contig1168.1073.1|Name=mRNA_H-paniculata_contig1168.1073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7127bp|location=Sequence derived from alignment at H-paniculata_contig1168:393..7519- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1168:393..7519- >mRNA_H-paniculata_contig1168.1073.1 ID=mRNA_H-paniculata_contig1168.1073.1|Name=mRNA_H-paniculata_contig1168.1073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2178bp|location=Sequence derived from alignment at H-paniculata_contig1168:393..7519- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |