mRNA_H-paniculata_contig4153.10672.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: D7FKE1_ECTSI (AP-1 complex subunit gamma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE1_ECTSI) HSP 1 Score: 207 bits (526), Expect = 5.340e-61 Identity = 103/121 (85.12%), Postives = 110/121 (90.91%), Query Frame = 1
Query: 10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKELQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFW-DQFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
YVDKMLEMIAVAGD VAGAVWHRIIQIVTNHK+LQAYAA+RLF TL+S RAHETAV++GGYILGEFGYFIAEQ DQFHVLHQHF + GPAAKALLLSTYAKLANLYPECR+LVTPV
Sbjct: 448 YVDKMLEMIAVAGDSVAGAVWHRIIQIVTNHKDLQAYAAERLFATLQSPRAHETAVNIGGYILGEFGYFIAEQDKMSGQDQFHVLHQHFMEVGPAAKALLLSTYAKLANLYPECRELVTPV 568
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: A0A6H5L7E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E0_9PHAE) HSP 1 Score: 207 bits (527), Expect = 1.200e-59 Identity = 104/121 (85.95%), Postives = 110/121 (90.91%), Query Frame = 1
Query: 10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKELQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFW-DQFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
YVDKMLEMIAVAGD VAGAVWHRIIQIVTNHK+LQAYAA+RLF TL+S RAHETAV+VGGYILGEFGYFIAEQ DQFHVLHQHF + GPAAKALLLSTYAKLANLYPECR+LVTPV
Sbjct: 452 YVDKMLEMIAVAGDSVAGAVWHRIIQIVTNHKDLQAYAAERLFATLQSPRAHETAVNVGGYILGEFGYFIAEQDEMSGQDQFHVLHQHFMEVGPAAKALLLSTYAKLANLYPECRELVTPV 572
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: A0A836C8G3_9STRA (AP-1 complex subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G3_9STRA) HSP 1 Score: 179 bits (454), Expect = 1.700e-50 Identity = 88/121 (72.73%), Postives = 101/121 (83.47%), Query Frame = 1
Query: 10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKELQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFWD-QFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
YVD +L+MI++AGD V VWHRI+QIVTN+K+LQAYAA+RLF LR+KR H+TAV+VGGYILGEFG+FIAEQ D QF LHQHFADA P +ALLLSTYAKLANLYPECR LVTPV
Sbjct: 474 YVDTVLQMISIAGDHVGAEVWHRIVQIVTNNKDLQAYAAERLFGALRAKRVHQTAVNVGGYILGEFGFFIAEQEGMGGDAQFAALHQHFADASPGTRALLLSTYAKLANLYPECRALVTPV 594
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: A0A7S1BCA8_9STRA (AP-2 complex subunit alpha n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCA8_9STRA) HSP 1 Score: 149 bits (375), Expect = 3.620e-39 Identity = 75/123 (60.98%), Postives = 95/123 (77.24%), Query Frame = 1
Query: 10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHK--ELQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFWD-QFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
YVD +L++I+++GD V+ ++WHR++QIVTN+ +LQ+YAA LFVT+ SKRAHETAV V YILGEFG+ IAEQ + QF VLHQH+ G KA+L+STYAKLANLY ECR LVTPV
Sbjct: 442 YVDTILKLISISGDHVSDSIWHRVVQIVTNNPAGDLQSYAAATLFVTVASKRAHETAVKVSAYILGEFGFLIAEQPGMSGEEQFGVLHQHWPVVGRMTKAILISTYAKLANLYEECRPLVTPV 564
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: W7TFV9_9STRA (AP-2 complex subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFV9_9STRA) HSP 1 Score: 146 bits (369), Expect = 2.350e-38 Identity = 75/120 (62.50%), Postives = 87/120 (72.50%), Query Frame = 1
Query: 10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKELQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFWD-QFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTP 366
YVD +L++I +AGD+VA VWHRIIQIVT HK+LQAYAA+ F L ++ HE AV VGGY+LGEFGY IAEQ + Q VL +HFA P KALLLSTYAKL NLYPE R LV P
Sbjct: 500 YVDTVLQLIHLAGDYVADDVWHRIIQIVTGHKDLQAYAAENCFRALEARNVHEAAVLVGGYVLGEFGYLIAEQPGRGGEVQVRVLQKHFAGTTPRTKALLLSTYAKLENLYPEVRPLVLP 619
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: K0R582_THAOC (AP-2 complex subunit alpha n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R582_THAOC) HSP 1 Score: 146 bits (368), Expect = 3.200e-38 Identity = 69/123 (56.10%), Postives = 93/123 (75.61%), Query Frame = 1
Query: 10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKE--LQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFWD-QFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
YVD +L++I++AGD+V+ ++WHR++QIVTNH + LQ YAA LF+ + R HET V V Y+LGEFG+ IAE+A + QFHVLHQH+ + G + K++L+STYAKLANLY ECR LV PV
Sbjct: 465 YVDTILKLISIAGDYVSDSIWHRVVQIVTNHPQGDLQGYAAATLFLAVSPHRCHETTVCVAAYVLGEFGFLIAERAGMSGEEQFHVLHQHWFNVGTSTKSILISTYAKLANLYEECRPLVAPV 587
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: A0A1Z5K119_FISSO (AP-2 complex subunit alpha n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K119_FISSO) HSP 1 Score: 140 bits (352), Expect = 4.580e-36 Identity = 68/123 (55.28%), Postives = 89/123 (72.36%), Query Frame = 1
Query: 10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKE--LQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFWD-QFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
YVD +L++I+++GD V+ A+WHR++QIVTNH + LQAY A L V +R HET V V YILGEFG+ IAE+ + QF +LHQH+ A PA +A+L+S+YAKLANLY ECR LV PV
Sbjct: 520 YVDTILKLISISGDHVSDAIWHRVVQIVTNHPQGDLQAYTAATLLVAASPRRCHETTVRVAAYILGEFGFLIAERPGMSGEEQFRILHQHWTTADPATRAILVSSYAKLANLYEECRPLVAPV 642
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: B7FY75_PHATC (AP-2 complex subunit alpha n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FY75_PHATC) HSP 1 Score: 139 bits (350), Expect = 8.520e-36 Identity = 68/123 (55.28%), Postives = 89/123 (72.36%), Query Frame = 1
Query: 10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKE--LQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFW-DQFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
YVD +L++I+++GD V+ A+WHR++QIVTNH + LQAY A L V + +R HETAV V YILGEFG+ IAE+ DQF +LHQH+A + + +L+STYAKLANLY ECR LV PV
Sbjct: 498 YVDSILKLISISGDNVSDAIWHRVVQIVTNHPQGDLQAYTAATLLVAVSPRRCHETAVRVASYILGEFGFLIAERPGMSGEDQFRILHQHWATSDHVTRGILISTYAKLANLYEECRPLVAPV 620
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: A0A7S2XJT4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJT4_9STRA) HSP 1 Score: 138 bits (348), Expect = 9.880e-36 Identity = 68/123 (55.28%), Postives = 89/123 (72.36%), Query Frame = 1
Query: 10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKE--LQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFW-DQFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
YVD ++++I ++GD V+ A+WHR++QIVTNH + LQAYAA L V +R HETAV V YILGEFG+ IAE++ DQF VLHQH+A A +++L+S YAKL+NLY ECR LV PV
Sbjct: 478 YVDTIIKLITISGDNVSDAIWHRVVQIVTNHPQGDLQAYAASTLLVAATPRRCHETAVRVAAYILGEFGFLIAERSGMSGEDQFRVLHQHWATADMQTRSILISAYAKLSNLYEECRPLVAPV 600
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: A0A7S2PNC4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PNC4_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.160e-35 Identity = 67/123 (54.47%), Postives = 88/123 (71.54%), Query Frame = 1
Query: 10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKE--LQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFWD-QFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
YVD +L++I+++GD V+ ++WHR++QIVTNH + LQAYAA L V +R HETA+ V Y+LGEFG+ IAE+ D QF VLHQH+ ++LLLSTYAKLANLY ECR LV P+
Sbjct: 171 YVDTILKLISISGDHVSDSIWHRVVQIVTNHPQGDLQAYAAATLLVAASPRRCHETAIRVAAYVLGEFGFLIAERPGMSGDEQFRVLHQHWPTVNKQTRSLLLSTYAKLANLYEECRPLVAPI 293 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4153.10672.1 >prot_H-paniculata_contig4153.10672.1 ID=prot_H-paniculata_contig4153.10672.1|Name=mRNA_H-paniculata_contig4153.10672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp MLEMIAVAGDFVAGAVWHRIIQIVTNHKELQAYAADRLFVTLRSKRAHETback to top mRNA from alignment at H-paniculata_contig4153:202..1304+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4153.10672.1 ID=mRNA_H-paniculata_contig4153.10672.1|Name=mRNA_H-paniculata_contig4153.10672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1103bp|location=Sequence derived from alignment at H-paniculata_contig4153:202..1304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4153:202..1304+ >mRNA_H-paniculata_contig4153.10672.1 ID=mRNA_H-paniculata_contig4153.10672.1|Name=mRNA_H-paniculata_contig4153.10672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig4153:202..1304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |