mRNA_H-paniculata_contig4153.10672.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4153.10672.1
Unique NamemRNA_H-paniculata_contig4153.10672.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: D7FKE1_ECTSI (AP-1 complex subunit gamma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE1_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 5.340e-61
Identity = 103/121 (85.12%), Postives = 110/121 (90.91%), Query Frame = 1
Query:   10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKELQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFW-DQFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
            YVDKMLEMIAVAGD VAGAVWHRIIQIVTNHK+LQAYAA+RLF TL+S RAHETAV++GGYILGEFGYFIAEQ      DQFHVLHQHF + GPAAKALLLSTYAKLANLYPECR+LVTPV
Sbjct:  448 YVDKMLEMIAVAGDSVAGAVWHRIIQIVTNHKDLQAYAAERLFATLQSPRAHETAVNIGGYILGEFGYFIAEQDKMSGQDQFHVLHQHFMEVGPAAKALLLSTYAKLANLYPECRELVTPV 568          
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: A0A6H5L7E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E0_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.200e-59
Identity = 104/121 (85.95%), Postives = 110/121 (90.91%), Query Frame = 1
Query:   10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKELQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFW-DQFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
            YVDKMLEMIAVAGD VAGAVWHRIIQIVTNHK+LQAYAA+RLF TL+S RAHETAV+VGGYILGEFGYFIAEQ      DQFHVLHQHF + GPAAKALLLSTYAKLANLYPECR+LVTPV
Sbjct:  452 YVDKMLEMIAVAGDSVAGAVWHRIIQIVTNHKDLQAYAAERLFATLQSPRAHETAVNVGGYILGEFGYFIAEQDEMSGQDQFHVLHQHFMEVGPAAKALLLSTYAKLANLYPECRELVTPV 572          
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: A0A836C8G3_9STRA (AP-1 complex subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G3_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.700e-50
Identity = 88/121 (72.73%), Postives = 101/121 (83.47%), Query Frame = 1
Query:   10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKELQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFWD-QFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
            YVD +L+MI++AGD V   VWHRI+QIVTN+K+LQAYAA+RLF  LR+KR H+TAV+VGGYILGEFG+FIAEQ     D QF  LHQHFADA P  +ALLLSTYAKLANLYPECR LVTPV
Sbjct:  474 YVDTVLQMISIAGDHVGAEVWHRIVQIVTNNKDLQAYAAERLFGALRAKRVHQTAVNVGGYILGEFGFFIAEQEGMGGDAQFAALHQHFADASPGTRALLLSTYAKLANLYPECRALVTPV 594          
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: A0A7S1BCA8_9STRA (AP-2 complex subunit alpha n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCA8_9STRA)

HSP 1 Score: 149 bits (375), Expect = 3.620e-39
Identity = 75/123 (60.98%), Postives = 95/123 (77.24%), Query Frame = 1
Query:   10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHK--ELQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFWD-QFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
            YVD +L++I+++GD V+ ++WHR++QIVTN+   +LQ+YAA  LFVT+ SKRAHETAV V  YILGEFG+ IAEQ     + QF VLHQH+   G   KA+L+STYAKLANLY ECR LVTPV
Sbjct:  442 YVDTILKLISISGDHVSDSIWHRVVQIVTNNPAGDLQSYAAATLFVTVASKRAHETAVKVSAYILGEFGFLIAEQPGMSGEEQFGVLHQHWPVVGRMTKAILISTYAKLANLYEECRPLVTPV 564          
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: W7TFV9_9STRA (AP-2 complex subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFV9_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.350e-38
Identity = 75/120 (62.50%), Postives = 87/120 (72.50%), Query Frame = 1
Query:   10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKELQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFWD-QFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTP 366
            YVD +L++I +AGD+VA  VWHRIIQIVT HK+LQAYAA+  F  L ++  HE AV VGGY+LGEFGY IAEQ     + Q  VL +HFA   P  KALLLSTYAKL NLYPE R LV P
Sbjct:  500 YVDTVLQLIHLAGDYVADDVWHRIIQIVTGHKDLQAYAAENCFRALEARNVHEAAVLVGGYVLGEFGYLIAEQPGRGGEVQVRVLQKHFAGTTPRTKALLLSTYAKLENLYPEVRPLVLP 619          
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: K0R582_THAOC (AP-2 complex subunit alpha n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R582_THAOC)

HSP 1 Score: 146 bits (368), Expect = 3.200e-38
Identity = 69/123 (56.10%), Postives = 93/123 (75.61%), Query Frame = 1
Query:   10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKE--LQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFWD-QFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
            YVD +L++I++AGD+V+ ++WHR++QIVTNH +  LQ YAA  LF+ +   R HET V V  Y+LGEFG+ IAE+A    + QFHVLHQH+ + G + K++L+STYAKLANLY ECR LV PV
Sbjct:  465 YVDTILKLISIAGDYVSDSIWHRVVQIVTNHPQGDLQGYAAATLFLAVSPHRCHETTVCVAAYVLGEFGFLIAERAGMSGEEQFHVLHQHWFNVGTSTKSILISTYAKLANLYEECRPLVAPV 587          
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: A0A1Z5K119_FISSO (AP-2 complex subunit alpha n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K119_FISSO)

HSP 1 Score: 140 bits (352), Expect = 4.580e-36
Identity = 68/123 (55.28%), Postives = 89/123 (72.36%), Query Frame = 1
Query:   10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKE--LQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFWD-QFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
            YVD +L++I+++GD V+ A+WHR++QIVTNH +  LQAY A  L V    +R HET V V  YILGEFG+ IAE+     + QF +LHQH+  A PA +A+L+S+YAKLANLY ECR LV PV
Sbjct:  520 YVDTILKLISISGDHVSDAIWHRVVQIVTNHPQGDLQAYTAATLLVAASPRRCHETTVRVAAYILGEFGFLIAERPGMSGEEQFRILHQHWTTADPATRAILVSSYAKLANLYEECRPLVAPV 642          
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: B7FY75_PHATC (AP-2 complex subunit alpha n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FY75_PHATC)

HSP 1 Score: 139 bits (350), Expect = 8.520e-36
Identity = 68/123 (55.28%), Postives = 89/123 (72.36%), Query Frame = 1
Query:   10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKE--LQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFW-DQFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
            YVD +L++I+++GD V+ A+WHR++QIVTNH +  LQAY A  L V +  +R HETAV V  YILGEFG+ IAE+      DQF +LHQH+A +    + +L+STYAKLANLY ECR LV PV
Sbjct:  498 YVDSILKLISISGDNVSDAIWHRVVQIVTNHPQGDLQAYTAATLLVAVSPRRCHETAVRVASYILGEFGFLIAERPGMSGEDQFRILHQHWATSDHVTRGILISTYAKLANLYEECRPLVAPV 620          
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: A0A7S2XJT4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJT4_9STRA)

HSP 1 Score: 138 bits (348), Expect = 9.880e-36
Identity = 68/123 (55.28%), Postives = 89/123 (72.36%), Query Frame = 1
Query:   10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKE--LQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFW-DQFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
            YVD ++++I ++GD V+ A+WHR++QIVTNH +  LQAYAA  L V    +R HETAV V  YILGEFG+ IAE++     DQF VLHQH+A A    +++L+S YAKL+NLY ECR LV PV
Sbjct:  478 YVDTIIKLITISGDNVSDAIWHRVVQIVTNHPQGDLQAYAASTLLVAATPRRCHETAVRVAAYILGEFGFLIAERSGMSGEDQFRVLHQHWATADMQTRSILISAYAKLSNLYEECRPLVAPV 600          
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Match: A0A7S2PNC4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PNC4_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.160e-35
Identity = 67/123 (54.47%), Postives = 88/123 (71.54%), Query Frame = 1
Query:   10 YVDKMLEMIAVAGDFVAGAVWHRIIQIVTNHKE--LQAYAADRLFVTLRSKRAHETAVSVGGYILGEFGYFIAEQASCFWD-QFHVLHQHFADAGPAAKALLLSTYAKLANLYPECRDLVTPV 369
            YVD +L++I+++GD V+ ++WHR++QIVTNH +  LQAYAA  L V    +R HETA+ V  Y+LGEFG+ IAE+     D QF VLHQH+       ++LLLSTYAKLANLY ECR LV P+
Sbjct:  171 YVDTILKLISISGDHVSDSIWHRVVQIVTNHPQGDLQAYAAATLLVAASPRRCHETAIRVAAYVLGEFGFLIAERPGMSGDEQFRVLHQHWPTVNKQTRSLLLSTYAKLANLYEECRPLVAPI 293          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4153.10672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKE1_ECTSI5.340e-6185.12AP-1 complex subunit gamma n=1 Tax=Ectocarpus sili... [more]
A0A6H5L7E0_9PHAE1.200e-5985.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8G3_9STRA1.700e-5072.73AP-1 complex subunit gamma n=1 Tax=Tribonema minus... [more]
A0A7S1BCA8_9STRA3.620e-3960.98AP-2 complex subunit alpha n=1 Tax=Corethron hystr... [more]
W7TFV9_9STRA2.350e-3862.50AP-2 complex subunit alpha n=2 Tax=Monodopsidaceae... [more]
K0R582_THAOC3.200e-3856.10AP-2 complex subunit alpha n=1 Tax=Thalassiosira o... [more]
A0A1Z5K119_FISSO4.580e-3655.28AP-2 complex subunit alpha n=2 Tax=Fistulifera sol... [more]
B7FY75_PHATC8.520e-3655.28AP-2 complex subunit alpha n=3 Tax=Phaeodactylum t... [more]
A0A7S2XJT4_9STRA9.880e-3655.28Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2PNC4_9STRA1.160e-3554.47Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4153contigH-paniculata_contig4153:202..1304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.3
Seed ortholog evalue1.6e-47
Seed eggNOG ortholog2880.D7FKE1
Preferred nameAP2A2
KEGG koko:K11824
KEGG Pathwayko04144,ko04721,ko04961,ko05016,map04144,map04721,map04961,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000278,GO:0000281,GO:0000323,GO:0000331,GO:0000910,GO:0001775,GO:0002064,GO:0002065,GO:0002066,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002478,GO:0002495,GO:0002504,GO:0002682,GO:0003006,GO:0003674,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0005905,GO:0005938,GO:0006109,GO:0006807,GO:0006810,GO:0006884,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006898,GO:0006950,GO:0006955,GO:0006970,GO:0006971,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0008021,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0008356,GO:0008361,GO:0008565,GO:0009056,GO:0009057,GO:0009628,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009992,GO:0010008,GO:0010324,GO:0010556,GO:0010558,GO:0010605,GO:0010720,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0012510,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016055,GO:0016192,GO:0016323,GO:0016324,GO:0016482,GO:0019222,GO:0019538,GO:0019725,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023052,GO:0030100,GO:0030104,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030141,GO:0030154,GO:0030163,GO:0030175,GO:0030276,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030667,GO:0030669,GO:0030674,GO:0030707,GO:0030855,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031344,GO:0031346,GO:0031410,GO:0031982,GO:0032153,GO:0032433,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032535,GO:0032794,GO:0032799,GO:0032801,GO:0032802,GO:0032879,GO:0032881,GO:0032885,GO:0032940,GO:0032991,GO:0033036,GO:0034381,GO:0034383,GO:0034613,GO:0034622,GO:0035091,GO:0035567,GO:0035615,GO:0036019,GO:0036020,GO:0036062,GO:0036090,GO:0036230,GO:0036465,GO:0038024,GO:0042119,GO:0042592,GO:0042734,GO:0042886,GO:0042995,GO:0043112,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044877,GO:0045055,GO:0045177,GO:0045184,GO:0045202,GO:0045321,GO:0045334,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045807,GO:0045912,GO:0046903,GO:0046907,GO:0048002,GO:0048013,GO:0048193,GO:0048259,GO:0048260,GO:0048268,GO:0048468,GO:0048475,GO:0048477,GO:0048488,GO:0048489,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050690,GO:0050750,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051285,GO:0051286,GO:0051301,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0055082,GO:0060071,GO:0060090,GO:0060255,GO:0060284,GO:0060429,GO:0060627,GO:0061024,GO:0061640,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0070325,GO:0070382,GO:0070727,GO:0070820,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072583,GO:0080090,GO:0090066,GO:0090175,GO:0097006,GO:0097060,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0097718,GO:0098588,GO:0098590,GO:0098657,GO:0098748,GO:0098793,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0098858,GO:0099003,GO:0099024,GO:0099503,GO:0099504,GO:0099568,GO:0099738,GO:0101002,GO:0101003,GO:0120025,GO:0120035,GO:0120038,GO:0198738,GO:1900125,GO:1900126,GO:1901532,GO:1901564,GO:1901565,GO:1901575,GO:1902036,GO:1902410,GO:1903047,GO:1903706,GO:1905114,GO:1905330,GO:1990386,GO:2000026,GO:2000027,GO:2000736
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1077@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Exons2
Model size369
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4153.10672.1prot_H-paniculata_contig4153.10672.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4153 223..1304 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930265.752873-UTR-H-paniculata_contig4153:201..2221622930265.752873-UTR-H-paniculata_contig4153:201..222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4153 202..222 +
1691481216.8428006-UTR-H-paniculata_contig4153:201..2221691481216.8428006-UTR-H-paniculata_contig4153:201..222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4153 202..222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930265.7689862-CDS-H-paniculata_contig4153:222..4451622930265.7689862-CDS-H-paniculata_contig4153:222..445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4153 223..445 +
1691481216.8557131-CDS-H-paniculata_contig4153:222..4451691481216.8557131-CDS-H-paniculata_contig4153:222..445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4153 223..445 +
1622930265.7855754-CDS-H-paniculata_contig4153:1179..13041622930265.7855754-CDS-H-paniculata_contig4153:1179..1304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4153 1180..1304 +
1691481216.8646615-CDS-H-paniculata_contig4153:1179..13041691481216.8646615-CDS-H-paniculata_contig4153:1179..1304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4153 1180..1304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4153.10672.1

>prot_H-paniculata_contig4153.10672.1 ID=prot_H-paniculata_contig4153.10672.1|Name=mRNA_H-paniculata_contig4153.10672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MLEMIAVAGDFVAGAVWHRIIQIVTNHKELQAYAADRLFVTLRSKRAHET
AVSVGGYILGEFGYFIAEQASCFWDQFHVLHQHFADAGPAAKALLLSTYA
KLANLYPECRDLVTPV
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mRNA from alignment at H-paniculata_contig4153:202..1304+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4153.10672.1 ID=mRNA_H-paniculata_contig4153.10672.1|Name=mRNA_H-paniculata_contig4153.10672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1103bp|location=Sequence derived from alignment at H-paniculata_contig4153:202..1304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATATAAGGTATGTGGATAAAATGCTGGAAATGATTGCGGTAGCCGGGGA CTTCGTCGCCGGAGCGGTATGGCATCGCATTATTCAGATCGTGACGAACC ACAAGGAGCTGCAGGCCTACGCCGCAGATCGGCTCTTCGTCACCCTACGC TCCAAGCGAGCGCACGAGACGGCAGTGAGCGTGGGAGGTTATATCCTGGG AGAGTTCGGGTATTTCATCGCCGAGCAGGCGAGTTGTTTTTGGGGTTTCG CGCGTGAGCTTAGCATGTAGTATTCGTACAGCACGCCATCACATGGCATG GTATCGGTAACGAGCCGACAGCGGGCACCATGCCCAATATGTTGGCAGGC AGGCAGGGTCTCCACACCGTCGACTTTTGTCCACTTGAGTGTGTATTGGA AATCAGAGAATTGCCTGATTGTAGTAGGGGTCATGATTCAGAGCCTCACG CAATCATTTTGGGTCCTTCAAAGGATTTCGAGCAATATATATAAAATGAC ACAAGACGGGGCTGAGGTGATTTTCTCCTCGAGTGCGGGTGGGTGGATGT TTGTTGAATAAGTAGATGGTGATATAATCGGAATCACAAGTTTCCTCCAA GCATTCTCCACTGTGTACTTGATGGTGGTGGTGGTGGTGGTTACAGGTGT TTTTGCTTTTATGAAGGCCAGTTTTTTTTCTCAGCTTTGAGAAAGGTGGT GCTTTTGCTGCTGTTATTGCTACAAACACTTTCGATTTTCGAAACATTCA GTTTGTCGTTGCGCTGAAAATTAGAACCAAACTCCAGGAACTTGACTTTG GTTTTTAATGAAATTTTTTCGTAGAAAAAAAAAAAGAAAGGTTACGGCAG CAGCACCGTTTTGTCACTTTTTTTTTCCAAAATTTAGTGACTTTTAGTTC TTTTCTTTTGGTTGTTGTTGTTGTGGCTGATTTTGTTGCTCTGTCATAAT CCAATACAGGAAAATAAATCGGGGGAAGATCAATTTCACGTGCTACACCA ACACTTCGCCGATGCTGGACCGGCTGCGAAGGCGTTACTCCTCAGTACGT ACGCAAAGCTAGCTAACCTGTATCCCGAGTGCCGAGACCTCGTCACGCCG GTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4153:202..1304+

>mRNA_H-paniculata_contig4153.10672.1 ID=mRNA_H-paniculata_contig4153.10672.1|Name=mRNA_H-paniculata_contig4153.10672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig4153:202..1304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGAAATGATTGCGGTAGCCGGGGACTTCGTCGCCGGAGCGGTATG
GCATCGCATTATTCAGATCGTGACGAACCACAAGGAGCTGCAGGCCTACG
CCGCAGATCGGCTCTTCGTCACCCTACGCTCCAAGCGAGCGCACGAGACG
GCAGTGAGCGTGGGAGGTTATATCCTGGGAGAGTTCGGGTATTTCATCGC
CGAGCAGGCGAGTTGTTTTTGGGATGCTGGAAATGATTGCGGTAGCCGGG
GACTTCGTCGCCGGAGCGGTATGGCATCGCATTATTCAGATCGTGACGAA
CCACAAGGAGCTGCAGGCCTACGCCGCAGATCGGCTCTTCGTCACCCTAC
GCTCCAAGCGAGCGCACGAGACGGCAGTGAGCGTGGGAGGTTATATCCTG
GGAGAGTTCGGGTATTTCATCGCCGAGCAGGCGAGTTGTTTTTGGGATCA
ATTTCACGTGCTACACCAACACTTCGCCGATGCTGGACCGGCTGCGAAGG
CGTTACTCCTCAGTACGTACGCAAAGCTAGCTAACCTGTATCCCGAGTGC
CGAGACCTCGTCACGCCGGTGATCAATTTCACGTGCTACACCAACACTTC
GCCGATGCTGGACCGGCTGCGAAGGCGTTACTCCTCAGTACGTACGCAAA
GCTAGCTAACCTGTATCCCGAGTGCCGAGACCTCGTCACGCCGGTG
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