mRNA_H-paniculata_contig415.10662.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig415.10662.1
Unique NamemRNA_H-paniculata_contig415.10662.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig415.10662.1 vs. uniprot
Match: D7FL41_ECTSI (WD40 repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL41_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.530e-18
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    4 TANKCVEVMADPNNHPIQSLSMATNASVVVGANNKGVVYIFSPGTDNKSYRLATKFQAHNAY 189
            TANK  E+  D  NHPIQSLSMATNASV+VGANNKG V++FSPG D KS++   + +AH+ Y
Sbjct:  147 TANKSHEIATDGKNHPIQSLSMATNASVLVGANNKGTVFVFSPGGDTKSFKKTNEIKAHDTY 208
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BLAST of mRNA_H-paniculata_contig415.10662.1 vs. uniprot
Match: A0A836C989_9STRA (WD40 repeat-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C989_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.660e-13
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   10 NKCVEVMADPNNHPIQSLSMATNASVVVGANNKGVVYIFSPGTDNKSYRLATKFQAHNAY 189
            +KC+E+  + + HPIQS+S AT+ASV+V A + G V++F PG D +SY LA+ F+AH  Y
Sbjct:  149 SKCIEIATNGDEHPIQSISAATDASVIVAAGSHGRVFVFEPGRDGRSYALASHFKAHEGY 208
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BLAST of mRNA_H-paniculata_contig415.10662.1 vs. uniprot
Match: Q6FS38_CANGA (Target of rapamycin complex subunit LST8 n=9 Tax=Saccharomycetaceae TaxID=4893 RepID=Q6FS38_CANGA)

HSP 1 Score: 50.8 bits (120), Expect = 8.970e-6
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    1 LTANKCVEVMADPNNHPIQSLSMATNASVVVGANNKGVVYIFS-PG-TDNKSYRLATKFQAHNAY 189
            L  N+C   +   ++ P+QSLS+A++ S++V ANNKG  Y++  P  TD  + + ATKF+AH +Y
Sbjct:  145 LGENQCTHQLTPEDDVPLQSLSVASDGSMLVAANNKGNCYVWEMPNHTDASNLKPATKFKAHPSY 209
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BLAST of mRNA_H-paniculata_contig415.10662.1 vs. uniprot
Match: Q75ET3_ASHGO (AAL009Cp n=15 Tax=Saccharomycetaceae TaxID=4893 RepID=Q75ET3_ASHGO)

HSP 1 Score: 48.1 bits (113), Expect = 8.180e-5
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    1 LTANKCVEVMADPNNHPIQSLSMATNASVVVGANNKGVVYIFS-PG-TDNKSYRLATKFQAHNAY 189
            L  N+C   +A  +N  +QSLS+A++ S++V  NNKG  Y++  P  TD  S +  TKF++H+ Y
Sbjct:  145 LGENQCTNQLALEDNTALQSLSIASDGSMLVAGNNKGNCYVWKMPNHTDTASLKPVTKFRSHSKY 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig415.10662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FL41_ECTSI2.530e-1862.90WD40 repeat containing protein n=1 Tax=Ectocarpus ... [more]
A0A836C989_9STRA3.660e-1350.00WD40 repeat-containing protein n=1 Tax=Tribonema m... [more]
Q6FS38_CANGA8.970e-641.54Target of rapamycin complex subunit LST8 n=9 Tax=S... [more]
Q75ET3_ASHGO8.180e-540.00AAL009Cp n=15 Tax=Saccharomycetaceae TaxID=4893 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig415contigH-paniculata_contig415:6398..7487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue5e-12
Seed eggNOG ortholog2880.D7FL41
Preferred nameMLST8
KEGG koko:K08266
KEGG Pathwayko04136,ko04138,ko04140,ko04150,ko04151,ko04714,map04136,map04138,map04140,map04150,map04151,map04714
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0001558,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005773,GO:0005776,GO:0005794,GO:0005829,GO:0005886,GO:0006355,GO:0006935,GO:0006950,GO:0006996,GO:0007010,GO:0007049,GO:0007050,GO:0007154,GO:0007163,GO:0007165,GO:0007190,GO:0007492,GO:0007498,GO:0008047,GO:0008064,GO:0008104,GO:0008150,GO:0008361,GO:0009267,GO:0009605,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010008,GO:0010468,GO:0010506,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016043,GO:0016241,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0019897,GO:0019898,GO:0022402,GO:0023051,GO:0023052,GO:0023056,GO:0030029,GO:0030036,GO:0030100,GO:0030234,GO:0030295,GO:0030587,GO:0030832,GO:0030833,GO:0030838,GO:0030950,GO:0030952,GO:0031090,GO:0031152,GO:0031234,GO:0031252,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031334,GO:0031399,GO:0031401,GO:0031410,GO:0031505,GO:0031667,GO:0031668,GO:0031669,GO:0031929,GO:0031930,GO:0031931,GO:0031932,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032006,GO:0032008,GO:0032147,GO:0032148,GO:0032268,GO:0032270,GO:0032271,GO:0032273,GO:0032502,GO:0032535,GO:0032879,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0033674,GO:0034399,GO:0034504,GO:0034613,GO:0035556,GO:0038201,GO:0038202,GO:0038203,GO:0040008,GO:0040011,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042594,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043327,GO:0043519,GO:0043520,GO:0043539,GO:0043549,GO:0044087,GO:0044089,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044764,GO:0045229,GO:0045786,GO:0045793,GO:0045806,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0046626,GO:0046628,GO:0048382,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048856,GO:0050730,GO:0050731,GO:0050764,GO:0050765,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051336,GO:0051338,GO:0051347,GO:0051493,GO:0051495,GO:0051641,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0051896,GO:0051897,GO:0060255,GO:0060627,GO:0061586,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071496,GO:0071554,GO:0071555,GO:0071840,GO:0071852,GO:0071900,GO:0071902,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090702,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098630,GO:0098743,GO:0098772,GO:0098791,GO:0098805,GO:0099120,GO:0110053,GO:1900034,GO:1900076,GO:1900078,GO:1902531,GO:1902533,GO:1902680,GO:1902903,GO:1902905,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.TOR signaling
EggNOG OGsKOG0315@1,KOG0315@2759
Ec32 ortholog descriptionWD40 repeat containing protein
Ec32 orthologEc-05_006730.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size191
Cds size162
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig415.10662.1prot_H-paniculata_contig415.10662.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig415 6425..7487 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930264.3822014-UTR-H-paniculata_contig415:6397..64241622930264.3822014-UTR-H-paniculata_contig415:6397..6424Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig415 6398..6424 +
1691481216.285043-UTR-H-paniculata_contig415:6397..64241691481216.285043-UTR-H-paniculata_contig415:6397..6424Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig415 6398..6424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930264.3942144-CDS-H-paniculata_contig415:6424..65441622930264.3942144-CDS-H-paniculata_contig415:6424..6544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig415 6425..6544 +
1691481216.2957819-CDS-H-paniculata_contig415:6424..65441691481216.2957819-CDS-H-paniculata_contig415:6424..6544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig415 6425..6544 +
1622930264.4068604-CDS-H-paniculata_contig415:7445..74871622930264.4068604-CDS-H-paniculata_contig415:7445..7487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig415 7446..7487 +
1691481216.3036473-CDS-H-paniculata_contig415:7445..74871691481216.3036473-CDS-H-paniculata_contig415:7445..7487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig415 7446..7487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig415.10662.1

>prot_H-paniculata_contig415.10662.1 ID=prot_H-paniculata_contig415.10662.1|Name=mRNA_H-paniculata_contig415.10662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MADPNNHPIQSLSMATNASVVVGANNKGVVYIFSPGTDNKSYRLATKFQA
HNAY
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mRNA from alignment at H-paniculata_contig415:6398..7487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig415.10662.1 ID=mRNA_H-paniculata_contig415.10662.1|Name=mRNA_H-paniculata_contig415.10662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1090bp|location=Sequence derived from alignment at H-paniculata_contig415:6398..7487+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGACGGCGAACAAGTGTGTCGAAGTCATGGCGGACCCGAACAATCACCC
CATCCAGAGCCTATCGATGGCAACCAACGCTTCTGTGGTCGTGGGCGCGA
ACAACAAAGGCGTCGTCTACATATTTTCGCCGGGCACGGACAACAAGGCG
AGTGTCTGGTTGGTACCTACTCTACACGTGACTGTGTAGCGGCAGGCCGA
ACCTAGAATTTGAATCTCCAAAAATCTGGCTCATTTTGGTTGTCGAAATG
GTGGAATTTCTCCATATGAAGGAGACACCTTTCTTGTCGATGTCGGATAC
AAATAGGCTTTATTTCATGTTTACTGGCAAGTGCAAGTGGTTGAAGAGGT
GTTTTCGTTTGTATTGTCTCCGGCGTCTCCAGGGAGGGAAAACTAAATCG
GATTAAAGCTCTCTTTACCAGCTTTCTGATCCACCCCAAACACCGATTTA
CCTATTTTCATATTTCCGAATAGTGAAAATATGAATTTTTCGCTCGTTTC
TCGTCCCCGCCAAGAACATGACACAACATGGGAAGGCTGTAATGTTAGCT
TTCGAACGAGCTACAACTCCGCCTTGCGCCTTGCGGGGTTTTACAAAGGA
AATGGACAGTCGATGTGGCGCTTTTTTTGGTAGGATGCATATAATCATCA
TCCAAGAGGACAGTTGTCATCATTCAGTATTCTCTCTGCATCATGGTCTG
CCGAACATAAAATTTACGGTGAAGATGGCGCTGTCACGTTATATGTAAAT
AGAGTCGAGTCCGATGTTCTACAGGTACATGATGATGAACACGACGTCCT
CGCTTTCAAAACAAACTAGCCTCGGCATCCCTAGTATTTTGTTGTATTTC
ATGTCACCGAACTAAAGGAACAAATATATTTATGAAAACGCCGCTGTGAA
AAAAAAAAAAAAAATGAAAAAAAATCCGAACAGAATAGCTGAAATTTGAA
ATGCATAGTTATTTTTCGACCAAGATTATTCCGAAACAATTTTCGTCATG
GCTACTCTTTTTTTCTTTTGGTTGTAATCTCTTCGCGTCGCCGAACAGAG
CTACCGTCTCGCCACCAAGTTTCAGGCCCACAACGCGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig415:6398..7487+

>mRNA_H-paniculata_contig415.10662.1 ID=mRNA_H-paniculata_contig415.10662.1|Name=mRNA_H-paniculata_contig415.10662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig415:6398..7487+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGACCCGAACAATCACCCCATCCAGAGCCTATCGATGGCAACCAA
CGCTTCTGTGGTCGTGGGCGCGAACAACAAAGGCGTCGTCTACATATTTT
CGCCGGGCACGGACAACAAGATGGCGGACCCGAACAATCACCCCATCCAG
AGCCTATCGATGGCAACCAACGCTTCTGTGGTCGTGGGCGCGAACAACAA
AGGCGTCGTCTACATATTTTCGCCGGGCACGGACAACAAGAGCTACCGTC
TCGCCACCAAGTTTCAGGCCCACAACGCGTACAGCTACCGTCTCGCCACC
AAGTTTCAGGCCCACAACGCGTAC
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