prot_H-paniculata_contig415.10662.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig415.10662.1
Unique Nameprot_H-paniculata_contig415.10662.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length54
Homology
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BLAST of mRNA_H-paniculata_contig415.10662.1 vs. uniprot
Match: D7FL41_ECTSI (WD40 repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL41_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.920e-15
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 0 
Query:    3 DPNNHPIQSLSMATNASVVVGANNKGVVYIFSPGTDNKSYRLATKFQAHNAY 54
            D  NHPIQSLSMATNASV+VGANNKG V++FSPG D KS++   + +AH+ Y
Sbjct:  157 DGKNHPIQSLSMATNASVLVGANNKGTVFVFSPGGDTKSFKKTNEIKAHDTY 208
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BLAST of mRNA_H-paniculata_contig415.10662.1 vs. uniprot
Match: A0A836C989_9STRA (WD40 repeat-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C989_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.030e-10
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0 
Query:    7 HPIQSLSMATNASVVVGANNKGVVYIFSPGTDNKSYRLATKFQAHNAY 54
            HPIQS+S AT+ASV+V A + G V++F PG D +SY LA+ F+AH  Y
Sbjct:  161 HPIQSISAATDASVIVAAGSHGRVFVFEPGRDGRSYALASHFKAHEGY 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig415.10662.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL41_ECTSI4.920e-1565.38WD40 repeat containing protein n=1 Tax=Ectocarpus ... [more]
A0A836C989_9STRA6.030e-1056.25WD40 repeat-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig415contigH-paniculata_contig415:6425..7487 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig415.10662.1mRNA_H-paniculata_contig415.10662.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig415 6398..7487 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig415.10662.1 ID=prot_H-paniculata_contig415.10662.1|Name=mRNA_H-paniculata_contig415.10662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MADPNNHPIQSLSMATNASVVVGANNKGVVYIFSPGTDNKSYRLATKFQA
HNAY
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