mRNA_H-paniculata_contig41388.10641.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41388.10641.1
Unique NamemRNA_H-paniculata_contig41388.10641.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig41388.10641.1 vs. uniprot
Match: D7FGR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR9_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 5.710e-61
Identity = 97/141 (68.79%), Postives = 117/141 (82.98%), Query Frame = 1 
Query:    4 KEFAERPKNACPAFVARRLTLLLDVSEPNQRYRMLQLLYLRHMIAFHHSGNLLKGTPGQLSTNLDIPEVVVRRLLEKFAVCESRGRGGAGSYSRTKTLKNQLLVHTLCLALVLEGCRLEFETLSQDLKLSTADTRAMIREL 426
            K+FAERP+ +CP FV +RLTLLLD+ E NQ+ RML+LLYLRHM  FHH+  LLKGTP QLS  LDIPE+V+RRLLEKF+VCE +G GG  +Y RTKTLKNQL+VH LCLALVLEGCRLE   L++D +LSTA+ R+M+REL
Sbjct:  292 KDFAERPRESCPHFVGKRLTLLLDLGERNQKRRMLELLYLRHMCVFHHASALLKGTPAQLSAKLDIPEIVLRRLLEKFSVCEKKGAGGTANYVRTKTLKNQLVVHALCLALVLEGCRLEIGVLAEDFRLSTAEARSMLREL 432
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41388.10641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGR9_ECTSI5.710e-6168.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41388contigH-paniculata_contig41388:810..1394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.4
Seed ortholog evalue7.2e-50
Seed eggNOG ortholog2880.D7FGR9
Preferred namePOLR1E
KEGG rclassRC02795
KEGG koko:K03005
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001179,GO:0001188,GO:0001650,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006360,GO:0006361,GO:0006362,GO:0006363,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009303,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0022607,GO:0030880,GO:0031974,GO:0031981,GO:0032535,GO:0032774,GO:0032991,GO:0034062,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0090066,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.transcription by RNA polymerase I
EggNOG OGsKOG4183@1,KOG4183@2759
Ec32 ortholog descriptionRNA polymerase I associated factor, A49-like
Ec32 orthologEc-04_001110.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Exons2
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930261.882211-CDS-H-paniculata_contig41388:809..10041622930261.882211-CDS-H-paniculata_contig41388:809..1004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41388 810..1004 -
1691481215.200089-CDS-H-paniculata_contig41388:809..10041691481215.200089-CDS-H-paniculata_contig41388:809..1004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41388 810..1004 -
1622930261.8954742-CDS-H-paniculata_contig41388:1163..13941622930261.8954742-CDS-H-paniculata_contig41388:1163..1394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41388 1164..1394 -
1691481215.2142646-CDS-H-paniculata_contig41388:1163..13941691481215.2142646-CDS-H-paniculata_contig41388:1163..1394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41388 1164..1394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41388.10641.1prot_H-paniculata_contig41388.10641.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41388 810..1394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41388.10641.1

>prot_H-paniculata_contig41388.10641.1 ID=prot_H-paniculata_contig41388.10641.1|Name=mRNA_H-paniculata_contig41388.10641.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
VKEFAERPKNACPAFVARRLTLLLDVSEPNQRYRMLQLLYLRHMIAFHHS
GNLLKGTPGQLSTNLDIPEVVVRRLLEKFAVCESRGRGGAGSYSRTKTLK
NQLLVHTLCLALVLEGCRLEFETLSQDLKLSTADTRAMIREL
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mRNA from alignment at H-paniculata_contig41388:810..1394-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41388.10641.1 ID=mRNA_H-paniculata_contig41388.10641.1|Name=mRNA_H-paniculata_contig41388.10641.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=585bp|location=Sequence derived from alignment at H-paniculata_contig41388:810..1394- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTAAGGAATTCGCAGAGCGGCCGAAGAATGCGTGCCCTGCCTTTGTGGC
GAGGAGGCTGACGCTGCTGCTCGACGTCAGCGAGCCCAATCAGCGGTATC
GGATGCTACAGCTGCTGTACCTTCGACATATGATCGCGTTTCACCACAGC
GGGAACCTATTGAAGGGAACTCCCGGCCAGCTGTCGACGAACCTGGACAT
CCCTGAGGTGGTCGTGCGACGCCTGCTGGAGGTACGCTTGATTGGTGGCC
CACGAGCAGGGAGGGGGGTGGAGGTCGCATCAAAGATTTTACCCAGAATC
TCTTGTGTGAAGTTATCTCACATTTCTTCTTTTTTCTTCTTTTTTCTTCT
TTTTTTCTCTTTTTTTCTCTCTTTTTTTTTTTTTCTTCAGAAATTCGCCG
TCTGCGAATCTCGTGGACGAGGAGGCGCCGGCTCGTACTCGCGCACGAAG
ACCCTCAAGAACCAGCTACTAGTGCACACGCTATGTCTTGCCTTGGTGCT
GGAAGGATGCCGCTTGGAATTCGAGACACTATCGCAGGATCTCAAGCTGT
CAACGGCGGACACCCGTGCTATGATTCGAGAGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig41388:810..1394-

>mRNA_H-paniculata_contig41388.10641.1 ID=mRNA_H-paniculata_contig41388.10641.1|Name=mRNA_H-paniculata_contig41388.10641.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig41388:810..1394- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTAAGGAATTCGCAGAGCGGCCGAAGAATGCGTGCCCTGCCTTTGTGGC
GAGGAGGCTGACGCTGCTGCTCGACGTCAGCGAGCCCAATCAGCGGTATC
GGATGCTACAGCTGCTGTACCTTCGACATATGATCGCGTTTCACCACAGC
GGGAACCTATTGAAGGGAACTCCCGGCCAGCTGTCGACGAACCTGGACAT
CCCTGAGGTGGTCGTGCGACGCCTGCTGGAGGTTAAGGAATTCGCAGAGC
GGCCGAAGAATGCGTGCCCTGCCTTTGTGGCGAGGAGGCTGACGCTGCTG
CTCGACGTCAGCGAGCCCAATCAGCGGTATCGGATGCTACAGCTGCTGTA
CCTTCGACATATGATCGCGTTTCACCACAGCGGGAACCTATTGAAGGGAA
CTCCCGGCCAGCTGTCGACGAACCTGGACATCCCTGAGGTGGTCGTGCGA
CGCCTGCTGGAGAAATTCGCCGTCTGCGAATCTCGTGGACGAGGAGGCGC
CGGCTCGTACTCGCGCACGAAGACCCTCAAGAACCAGCTACTAGTGCACA
CGCTATGTCTTGCCTTGGTGCTGGAAGGATGCCGCTTGGAATTCGAGACA
CTATCGCAGGATCTCAAGCTGTCAACGGCGGACACCCGTGCTATGATTCG
AGAGCTGAAATTCGCCGTCTGCGAATCTCGTGGACGAGGAGGCGCCGGCT
CGTACTCGCGCACGAAGACCCTCAAGAACCAGCTACTAGTGCACACGCTA
TGTCTTGCCTTGGTGCTGGAAGGATGCCGCTTGGAATTCGAGACACTATC
GCAGGATCTCAAGCTGTCAACGGCGGACACCCGTGCTATGATTCGAGAGC
TG
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