prot_H-paniculata_contig41302.10628.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig41302.10628.1
Unique Name	prot_H-paniculata_contig41302.10628.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	163

Homology

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BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A8F0F791_9PHAE (Photosystem II protein V n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F791_9PHAE)

HSP 1 Score: 306 bits (783), Expect = 5.470e-105
Identity = 149/161 (92.55%), Postives = 155/161 (96.27%), Query Frame = 0

Query:    2 VLRKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 162
            +LRKI IGFLVICFSNIFN S FAIELDEATRTI VNG GKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGL+DY+K PTTYDGLESIAEIHPSIKSANIF+RMRSLDD+DLFDIAGHILIQPKI+SEKWGGGKIYY
Sbjct:    1 MLRKIIIGFLVICFSNIFNPSVFAIELDEATRTIPVNGKGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLVDYMKNPTTYDGLESIAEIHPSIKSANIFSRMRSLDDDDLFDIAGHILIQPKIVSEKWGGGKIYY 161

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BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A0Y0JAL7_9PHAE (PsbV n=10 Tax=Fucales TaxID=3009 RepID=A0A0Y0JAL7_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 9.600e-90
Identity = 127/159 (79.87%), Postives = 143/159 (89.94%), Query Frame = 0

Query:    4 RKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 162
            +K FI F ++   N+ N S  AIELDEATRTI V  +GKTTVLTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLA+PARNNI+ L+DY+K+PTT+DGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct:    3 KKFFITFTIVSLINLTNLSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKDPTTFDGLESIAEIHPSIKSANIFTRMRSLDENDLIDIAGHILLQPKIVSEKWGGGKIYY 161

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BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A8F0FAG4_9PHAE (Photosystem II protein V n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAG4_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 7.890e-89
Identity = 125/159 (78.62%), Postives = 143/159 (89.94%), Query Frame = 0

Query:    4 RKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 162
            +K FI   + C +N    S  AI+LDEATRTI V  +GKTTVLTPEQ+KRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLA+P+RNNI+GL++Y+K+PTTYDGLESIAEIHPSIKSANIFTRMR+LD++DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct:    3 KKFFISLTIACLANSVGSSVLAIDLDEATRTIPVTSDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLATPSRNNINGLVNYMKDPTTYDGLESIAEIHPSIKSANIFTRMRALDEKDLVDIAGHILLQPKILSEKWGGGKIYY 161

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BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A2I4Q2C0_9PHAE (Cytochrome c-550 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C0_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 1.240e-88
Identity = 131/164 (79.88%), Postives = 144/164 (87.80%), Query Frame = 0

Query:    1 MVLRKIFIGFLVICFSNIFNH--SAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 162
            M L+K  +  ++ C  + F    + F IELDEATRTI VN  GKTTVLT EQLKRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLA+PARNNIDGL+DY+K PTTYDGLESIAEIHPSIKSANIF+RMRSLDD+DLFDIAGHILIQPKI+SEKWGGGKIYY
Sbjct:    1 MSLKKTSLLLIMFCLFSSFISVPNTFGIELDEATRTIKVNKEGKTTVLTAEQLKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNIDGLVDYMKAPTTYDGLESIAEIHPSIKSANIFSRMRSLDDDDLFDIAGHILIQPKIVSEKWGGGKIYY 164

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BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A1I9LVF9_9PHAE (Cytochrome c-550 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVF9_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 3.210e-88
Identity = 126/161 (78.26%), Postives = 143/161 (88.82%), Query Frame = 0

Query:    2 VLRKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 162
            +L+K+F   ++    N+ + SAFAIELDEATRTI V  +GKT VLTPEQ+KRGKRLFNSSCGQCHVGGITKTNPN+GLD EALSLA+P+RNNI GL+DY+K PTTYDGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct:    1 MLKKVFTSLIIASLLNLISCSAFAIELDEATRTIPVTSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNVGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161

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BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A0R6M468_UNDPI (Cytochrome c-550 n=36 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M468_UNDPI)

HSP 1 Score: 262 bits (669), Expect = 1.310e-87
Identity = 124/159 (77.99%), Postives = 139/159 (87.42%), Query Frame = 0

Query:    4 RKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 162
            +K F+   + C +     S  AI+LDEATRTI V  +GKTTVLTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLD EALSLA+PARNNI+GL+DY+K PTTYDGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct:    3 KKFFLSLTIACLATSVGSSVLAIDLDEATRTIPVTSDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDSEALSLATPARNNINGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161

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BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: D1J771_ECTSI (Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J771_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 1.250e-85
Identity = 123/159 (77.36%), Postives = 137/159 (86.16%), Query Frame = 0

Query:    4 RKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 162
            +K F   +++   N+   S  AIELDEATRTI    +GKT VLTPEQ+KRGKRLFNSSCGQCHVGGITKTNPNLGLD EALSLA+P+RNNI GL+DY+K PTTYDGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct:    3 KKFFTSLIIVSLLNLGTSSVLAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKILSEKWGGGKIYY 161

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BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A8E6D6I5_9PHAE (Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6I5_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 3.850e-84
Identity = 123/161 (76.40%), Postives = 143/161 (88.82%), Query Frame = 0

Query:    4 RKIFIGFLVICF--SNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 162
            ++I I  L+ C   S++   +AFAIELDEATRTI+V+  GKTT+LTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLA+PAR+NI GL+DY+K PTTYDGLESIAEIHPSIKSA+IF RMRSL ++DL  IAGHIL+QPKI+SEKWGGGKIYY
Sbjct:    9 KRITIRLLMACLLSSSLLVSAAFAIELDEATRTISVDSTGKTTILTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARDNITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEDDLVAIAGHILLQPKIVSEKWGGGKIYY 169

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BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A6B7EXK3_9PHAE (Photosystem II cytochrome c550 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXK3_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 2.670e-83
Identity = 119/140 (85.00%), Postives = 129/140 (92.14%), Query Frame = 0

Query:   23 AFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 162
            A AIELDEATRTI    +GKT VLTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLD EALSLA+P+RNNI GL+DY+K PTTYDGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct:   25 ALAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDTEALSLATPSRNNISGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 164

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BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A2U9NNV5_9STRA (Cytochrome c-550 n=1 Tax=Guinardia striata TaxID=1514137 RepID=A0A2U9NNV5_9STRA)

HSP 1 Score: 247 bits (631), Expect = 8.610e-82
Identity = 113/158 (71.52%), Postives = 139/158 (87.97%), Query Frame = 0

Query:    5 KIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 162
             +F  FL  C  N+F +SA AI+LDEATRT+AV+G+G TTVLTPEQ+KRGKRLFN++CG CHVGGITKTNPN+GLDPEALSLA+P R+NI  L+DY+K P TYDGL+SIAE+HPSIKSA+I+ RMRS+ D+DL+ IAGHI++QPKI++EKWGGGKIYY
Sbjct:    6 SVFSAFLFFCIFNVFVNSASAIDLDEATRTVAVDGSGNTTVLTPEQVKRGKRLFNATCGACHVGGITKTNPNVGLDPEALSLATPRRDNIAALVDYLKNPVTYDGLDSIAEVHPSIKSADIYPRMRSITDDDLYAIAGHIMLQPKIVTEKWGGGKIYY 163

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A8F0F791_9PHAE	5.470e-105	92.55	Photosystem II protein V n=1 Tax=Protohalopteris s...	[more]
A0A0Y0JAL7_9PHAE	9.600e-90	79.87	PsbV n=10 Tax=Fucales TaxID=3009 RepID=A0A0Y0JAL7_...	[more]
A0A8F0FAG4_9PHAE	7.890e-89	78.62	Photosystem II protein V n=2 Tax=Ecklonia TaxID=10...	[more]
A0A2I4Q2C0_9PHAE	1.240e-88	79.88	Cytochrome c-550 n=1 Tax=Dictyopteris divaricata T...	[more]
A0A1I9LVF9_9PHAE	3.210e-88	78.26	Cytochrome c-550 n=1 Tax=Pleurocladia lacustris Ta...	[more]
A0A0R6M468_UNDPI	1.310e-87	77.99	Cytochrome c-550 n=36 Tax=Phaeophyceae TaxID=2870 ...	[more]
D1J771_ECTSI	1.250e-85	77.36	Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 R...	[more]
A0A8E6D6I5_9PHAE	3.850e-84	76.40	Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233...	[more]
A0A6B7EXK3_9PHAE	2.670e-83	85.00	Photosystem II cytochrome c550 n=1 Tax=Cladosiphon...	[more]
A0A2U9NNV5_9STRA	8.610e-82	71.52	Cytochrome c-550 n=1 Tax=Guinardia striata TaxID=1...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016003	Photosystem II cytochrome c-550 precursor	PIRSF	PIRSF005890	Phot_II_cyt_c550	coord: 1..162 e-value: 1.3E-68 score: 227.7
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 28..156 e-value: 8.2E-54 score: 182.8
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 5..153
IPR029490	Cytochrome c-550 domain	PFAM	PF14495	Cytochrom_C550	coord: 27..162 e-value: 1.0E-57 score: 193.6
IPR017851	Photosystem II PsbV, cytochrome c-550 precursor	TIGRFAM	TIGR03045	TIGR03045	coord: 10..159 e-value: 2.0E-71 score: 236.8
IPR017851	Photosystem II PsbV, cytochrome c-550 precursor	HAMAP	MF_01378	PSII_Cyt550	coord: 3..162 score: 40.64
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..16
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 17..25
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..162
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..25 score: 0.667
IPR009056	Cytochrome c-like domain	PROSITE	PS51007	CYTC	coord: 49..148 score: 10.672

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig41302	contig	H-paniculata_contig41302:1217..1705 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig41302.10628.1	mRNA_H-paniculata_contig41302.10628.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig41302 1217..1705 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig41302.10628.1 ID=prot_H-paniculata_contig41302.10628.1|Name=mRNA_H-paniculata_contig41302.10628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp
MVLRKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQ
LKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDY
IKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKI
ISEKWGGGKIYY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016003	PSII_cyt_c550
IPR036909	Cyt_c-like_dom_sf
IPR029490	Cytochrom_C550
IPR017851	PSII_PsbV_cyt_c550
IPR009056	Cyt_c-like_dom