mRNA_H-paniculata_contig41302.10628.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41302.10628.1
Unique NamemRNA_H-paniculata_contig41302.10628.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A8F0F791_9PHAE (Photosystem II protein V n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F791_9PHAE)

HSP 1 Score: 306 bits (783), Expect = 5.470e-105
Identity = 149/161 (92.55%), Postives = 155/161 (96.27%), Query Frame = 1
Query:    4 VLRKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
            +LRKI IGFLVICFSNIFN S FAIELDEATRTI VNG GKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGL+DY+K PTTYDGLESIAEIHPSIKSANIF+RMRSLDD+DLFDIAGHILIQPKI+SEKWGGGKIYY
Sbjct:    1 MLRKIIIGFLVICFSNIFNPSVFAIELDEATRTIPVNGKGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLVDYMKNPTTYDGLESIAEIHPSIKSANIFSRMRSLDDDDLFDIAGHILIQPKIVSEKWGGGKIYY 161          
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A0Y0JAL7_9PHAE (PsbV n=10 Tax=Fucales TaxID=3009 RepID=A0A0Y0JAL7_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 9.600e-90
Identity = 127/159 (79.87%), Postives = 143/159 (89.94%), Query Frame = 1
Query:   10 RKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
            +K FI F ++   N+ N S  AIELDEATRTI V  +GKTTVLTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLA+PARNNI+ L+DY+K+PTT+DGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct:    3 KKFFITFTIVSLINLTNLSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKDPTTFDGLESIAEIHPSIKSANIFTRMRSLDENDLIDIAGHILLQPKIVSEKWGGGKIYY 161          
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A8F0FAG4_9PHAE (Photosystem II protein V n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAG4_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 7.890e-89
Identity = 125/159 (78.62%), Postives = 143/159 (89.94%), Query Frame = 1
Query:   10 RKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
            +K FI   + C +N    S  AI+LDEATRTI V  +GKTTVLTPEQ+KRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLA+P+RNNI+GL++Y+K+PTTYDGLESIAEIHPSIKSANIFTRMR+LD++DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct:    3 KKFFISLTIACLANSVGSSVLAIDLDEATRTIPVTSDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLATPSRNNINGLVNYMKDPTTYDGLESIAEIHPSIKSANIFTRMRALDEKDLVDIAGHILLQPKILSEKWGGGKIYY 161          
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A2I4Q2C0_9PHAE (Cytochrome c-550 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C0_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 1.240e-88
Identity = 131/164 (79.88%), Postives = 144/164 (87.80%), Query Frame = 1
Query:    1 MVLRKIFIGFLVICFSNIFNH--SAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
            M L+K  +  ++ C  + F    + F IELDEATRTI VN  GKTTVLT EQLKRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLA+PARNNIDGL+DY+K PTTYDGLESIAEIHPSIKSANIF+RMRSLDD+DLFDIAGHILIQPKI+SEKWGGGKIYY
Sbjct:    1 MSLKKTSLLLIMFCLFSSFISVPNTFGIELDEATRTIKVNKEGKTTVLTAEQLKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNIDGLVDYMKAPTTYDGLESIAEIHPSIKSANIFSRMRSLDDDDLFDIAGHILIQPKIVSEKWGGGKIYY 164          
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A1I9LVF9_9PHAE (Cytochrome c-550 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVF9_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 3.210e-88
Identity = 126/161 (78.26%), Postives = 143/161 (88.82%), Query Frame = 1
Query:    4 VLRKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
            +L+K+F   ++    N+ + SAFAIELDEATRTI V  +GKT VLTPEQ+KRGKRLFNSSCGQCHVGGITKTNPN+GLD EALSLA+P+RNNI GL+DY+K PTTYDGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct:    1 MLKKVFTSLIIASLLNLISCSAFAIELDEATRTIPVTSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNVGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161          
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A0R6M468_UNDPI (Cytochrome c-550 n=36 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M468_UNDPI)

HSP 1 Score: 262 bits (669), Expect = 1.310e-87
Identity = 124/159 (77.99%), Postives = 139/159 (87.42%), Query Frame = 1
Query:   10 RKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
            +K F+   + C +     S  AI+LDEATRTI V  +GKTTVLTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLD EALSLA+PARNNI+GL+DY+K PTTYDGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct:    3 KKFFLSLTIACLATSVGSSVLAIDLDEATRTIPVTSDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDSEALSLATPARNNINGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161          
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: D1J771_ECTSI (Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J771_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 1.250e-85
Identity = 123/159 (77.36%), Postives = 137/159 (86.16%), Query Frame = 1
Query:   10 RKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
            +K F   +++   N+   S  AIELDEATRTI    +GKT VLTPEQ+KRGKRLFNSSCGQCHVGGITKTNPNLGLD EALSLA+P+RNNI GL+DY+K PTTYDGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct:    3 KKFFTSLIIVSLLNLGTSSVLAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKILSEKWGGGKIYY 161          
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A8E6D6I5_9PHAE (Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6I5_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 3.850e-84
Identity = 123/161 (76.40%), Postives = 143/161 (88.82%), Query Frame = 1
Query:   10 RKIFIGFLVICF--SNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
            ++I I  L+ C   S++   +AFAIELDEATRTI+V+  GKTT+LTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLA+PAR+NI GL+DY+K PTTYDGLESIAEIHPSIKSA+IF RMRSL ++DL  IAGHIL+QPKI+SEKWGGGKIYY
Sbjct:    9 KRITIRLLMACLLSSSLLVSAAFAIELDEATRTISVDSTGKTTILTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARDNITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEDDLVAIAGHILLQPKIVSEKWGGGKIYY 169          
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A6B7EXK3_9PHAE (Photosystem II cytochrome c550 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXK3_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 2.670e-83
Identity = 119/140 (85.00%), Postives = 129/140 (92.14%), Query Frame = 1
Query:   67 AFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
            A AIELDEATRTI    +GKT VLTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLD EALSLA+P+RNNI GL+DY+K PTTYDGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct:   25 ALAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDTEALSLATPSRNNISGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 164          
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A2U9NNV5_9STRA (Cytochrome c-550 n=1 Tax=Guinardia striata TaxID=1514137 RepID=A0A2U9NNV5_9STRA)

HSP 1 Score: 247 bits (631), Expect = 8.610e-82
Identity = 113/158 (71.52%), Postives = 139/158 (87.97%), Query Frame = 1
Query:   13 KIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
             +F  FL  C  N+F +SA AI+LDEATRT+AV+G+G TTVLTPEQ+KRGKRLFN++CG CHVGGITKTNPN+GLDPEALSLA+P R+NI  L+DY+K P TYDGL+SIAE+HPSIKSA+I+ RMRS+ D+DL+ IAGHI++QPKI++EKWGGGKIYY
Sbjct:    6 SVFSAFLFFCIFNVFVNSASAIDLDEATRTVAVDGSGNTTVLTPEQVKRGKRLFNATCGACHVGGITKTNPNVGLDPEALSLATPRRDNIAALVDYLKNPVTYDGLDSIAEVHPSIKSADIYPRMRSITDDDLYAIAGHIMLQPKIVTEKWGGGKIYY 163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F791_9PHAE5.470e-10592.55Photosystem II protein V n=1 Tax=Protohalopteris s... [more]
A0A0Y0JAL7_9PHAE9.600e-9079.87PsbV n=10 Tax=Fucales TaxID=3009 RepID=A0A0Y0JAL7_... [more]
A0A8F0FAG4_9PHAE7.890e-8978.62Photosystem II protein V n=2 Tax=Ecklonia TaxID=10... [more]
A0A2I4Q2C0_9PHAE1.240e-8879.88Cytochrome c-550 n=1 Tax=Dictyopteris divaricata T... [more]
A0A1I9LVF9_9PHAE3.210e-8878.26Cytochrome c-550 n=1 Tax=Pleurocladia lacustris Ta... [more]
A0A0R6M468_UNDPI1.310e-8777.99Cytochrome c-550 n=36 Tax=Phaeophyceae TaxID=2870 ... [more]
D1J771_ECTSI1.250e-8577.36Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 R... [more]
A0A8E6D6I5_9PHAE3.850e-8476.40Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233... [more]
A0A6B7EXK3_9PHAE2.670e-8385.00Photosystem II cytochrome c550 n=1 Tax=Cladosiphon... [more]
A0A2U9NNV5_9STRA8.610e-8271.52Cytochrome c-550 n=1 Tax=Guinardia striata TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41302contigH-paniculata_contig41302:1217..1705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.8
Seed ortholog evalue1.7e-66
Seed eggNOG ortholog2880.D1J771
Preferred namepsbV
KEGG koko:K02720
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.photosynthesis
EggNOG OGs2CXNY@1,2RYSJ@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size489
Cds size489
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930259.9615133-CDS-H-paniculata_contig41302:1216..17051622930259.9615133-CDS-H-paniculata_contig41302:1216..1705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41302 1217..1705 -
1691481214.3890388-CDS-H-paniculata_contig41302:1216..17051691481214.3890388-CDS-H-paniculata_contig41302:1216..1705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41302 1217..1705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41302.10628.1prot_H-paniculata_contig41302.10628.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41302 1217..1705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41302.10628.1

>prot_H-paniculata_contig41302.10628.1 ID=prot_H-paniculata_contig41302.10628.1|Name=mRNA_H-paniculata_contig41302.10628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp
MVLRKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQ
LKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDY
IKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKI
ISEKWGGGKIYY*
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mRNA from alignment at H-paniculata_contig41302:1217..1705-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41302.10628.1 ID=mRNA_H-paniculata_contig41302.10628.1|Name=mRNA_H-paniculata_contig41302.10628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at H-paniculata_contig41302:1217..1705- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTTAAGAAAAATTTTTATAGGTTTTCTTGTTATTTGCTTTTCAAA TATATTTAACCACTCAGCTTTCGCTATCGAATTAGATGAGGCAACACGAA CTATTGCTGTTAATGGAAATGGAAAAACAACAGTTTTAACCCCTGAGCAA TTAAAAAGAGGGAAAAGATTGTTTAACTCTAGTTGTGGTCAATGTCATGT TGGTGGTATAACTAAGACAAATCCTAATTTAGGTCTTGATCCCGAAGCTT TAAGCTTAGCAAGTCCTGCGCGTAATAATATTGATGGTCTAATTGATTAT ATAAAAGAACCTACTACATATGATGGTTTAGAATCAATCGCAGAAATTCA TCCTAGTATTAAAAGTGCTAATATTTTTACAAGAATGCGTTCATTAGATG ATGAGGATTTATTCGATATTGCAGGTCATATATTAATACAACCAAAGATC ATCTCTGAAAAATGGGGTGGTGGAAAAATTTATTATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig41302:1217..1705-

>mRNA_H-paniculata_contig41302.10628.1 ID=mRNA_H-paniculata_contig41302.10628.1|Name=mRNA_H-paniculata_contig41302.10628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig41302:1217..1705- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTTAAGAAAAATTTTTATAGGTTTTCTTGTTATTTGCTTTTCAAA
TATATTTAACCACTCAGCTTTCGCTATCGAATTAGATGAGGCAACACGAA
CTATTGCTGTTAATGGAAATGGAAAAACAACAGTTTTAACCCCTGAGCAA
TTAAAAAGAGGGAAAAGATTGTTTAACTCTAGTTGTGGTCAATGTCATGT
TGGTGGTATAACTAAGACAAATCCTAATTTAGGTCTTGATCCCGAAGCTT
TAAGCTTAGCAAGTCCTGCGCGTAATAATATTGATGGTCTAATTGATTAT
ATAAAAGAACCTACTACATATGATGGTTTAGAATCAATCGCAGAAATTCA
TCCTAGTATTAAAAGTGCTAATATTTTTACAAGAATGCGTTCATTAGATG
ATGAGGATTTATTCGATATTGCAGGTCATATATTAATACAACCAAAGATC
ATCTCTGAAAAATGGGGTGGTGGAAAAATTTATTATTAAATGGTTTTAAG
AAAAATTTTTATAGGTTTTCTTGTTATTTGCTTTTCAAATATATTTAACC
ACTCAGCTTTCGCTATCGAATTAGATGAGGCAACACGAACTATTGCTGTT
AATGGAAATGGAAAAACAACAGTTTTAACCCCTGAGCAATTAAAAAGAGG
GAAAAGATTGTTTAACTCTAGTTGTGGTCAATGTCATGTTGGTGGTATAA
CTAAGACAAATCCTAATTTAGGTCTTGATCCCGAAGCTTTAAGCTTAGCA
AGTCCTGCGCGTAATAATATTGATGGTCTAATTGATTATATAAAAGAACC
TACTACATATGATGGTTTAGAATCAATCGCAGAAATTCATCCTAGTATTA
AAAGTGCTAATATTTTTACAAGAATGCGTTCATTAGATGATGAGGATTTA
TTCGATATTGCAGGTCATATATTAATACAACCAAAGATCATCTCTGAAAA
ATGGGGTGGTGGAAAAATTTATTATTAA
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