mRNA_H-paniculata_contig412.10608.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig412.10608.1 vs. uniprot
Match: D7G522_ECTSI (MYND-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G522_ECTSI) HSP 1 Score: 680 bits (1754), Expect = 7.310e-229 Identity = 352/462 (76.19%), Postives = 401/462 (86.80%), Query Frame = 2
Query: 245 MMVNHNEFGITDEEFEENDSEEEKVQELLLKKMCNFITRHPEAAGDDSIKTLSALAVDELLLNANLDTARMLFQPVPFLKFFKAHGVEGVDSRRADLEKAAEKVNETATEQGMLRALKEQIGGECKCLTQFKEGQPLKPPEEDMEDLTYEQSVAAPFLKIPVKKVNALGQDSRLHIEIRRLCAPNDKPPYLCILIAPASRYIFHSFPVEEINADKAFVHILEGIVMAVVTEGMGMIDEAVRIRPANLTTTDPLLAKFLSPLLEGTRVTVAASSDKVVNADADAKTKESPLIAIMDGVFADFNLEIQKENSKRKLPIGDTMAEEVKFKVKSKTASGKEKYVADPVAEERQIPDRMMACRGCNVLHLRSAVKQCSLCNQAWYCTSECQAKDWSAGHKTECSRKNEGKKKGKG--HVSEDSGEDLNDQAQKDALNSFTITKNVP-AGGGAKKKAAGKXXGKGKKK 1621
MMVNHNEFGIT+EEFEE+ ++E VQ+LLL+KM NFIT+HPEAAGDD+IKTL+ALAVDELLLN NL+ AR++FQPVPFLKFFK HGV G+DSRRADL+KA E+VN ATE GML AL + +G CKCLT F G PLKP EE+ E LTY +S+AAPFLKIPVKK NA GQDSRLH+EIRRL AP+DK PYLCILIAPASRY+FHSFP+EE ADKAF+H+LEGIVM VVTEGMGMI+EAVRIRPA LTTTDPLLA FLSPLLEGTRV+VAASSDKVVNAD+DAKTKESPLIAIMDGV+ADF +++ K NSKRKLPIGD M++E FKVKS+TASGKEKY+ADP E+R+IP++MMAC+GCN L LRS VKQCSLCN+ WYC +ECQA DWS GHK +CSRKNEGKKKGKG HVSEDSG+DL DQA KDAL+SF I + GGGAKKKA+GKXXGKGKKK
Sbjct: 1 MMVNHNEFGITEEEFEEHGNDEAAVQDLLLQKMKNFITKHPEAAGDDAIKTLTALAVDELLLNGNLENARLVFQPVPFLKFFKEHGVAGIDSRRADLDKATEEVNAVATEAGMLEALTKAVGSNCKCLTLFTPGNPLKPQEEEPEGLTYAESLAAPFLKIPVKKTNATGQDSRLHVEIRRLPAPHDKAPYLCILIAPASRYVFHSFPIEETQADKAFMHVLEGIVMGVVTEGMGMIEEAVRIRPAQLTTTDPLLANFLSPLLEGTRVSVAASSDKVVNADSDAKTKESPLIAIMDGVYADFFIDLTKANSKRKLPIGDNMSDEAAFKVKSRTASGKEKYIADPEKEKRKIPEKMMACKGCNQLKLRSQVKQCSLCNEVWYCGNECQASDWSKGHKNDCSRKNEGKKKGKGAGHVSEDSGDDLGDQAAKDALDSFAIDLHKGLGGGGAKKKASGKXXGKGKKK 462
BLAST of mRNA_H-paniculata_contig412.10608.1 vs. uniprot
Match: A0A6H5KRE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRE4_9PHAE) HSP 1 Score: 324 bits (830), Expect = 2.250e-98 Identity = 165/207 (79.71%), Postives = 184/207 (88.89%), Query Frame = 2
Query: 527 ADLEKAAEKVNETATEQGMLRALKEQIGGECKCLTQFKEGQPLKPPEEDMEDLTYEQSVAAPFLKIPVKKVNALGQDSRLHIEIRRLCAPNDKPPYLCILIAPASRYIFHSFPVEEINADKAFVHILEGIVMAVVTEGMGMIDEAVRIRPANLTTTDPLLAKFLSPLLEGTRVTVAASSDKVVNADADAKTKESPLIAIMDGVFADF 1147
ADL+KAAE+VN ATE GML AL + +G +C CLT F G PLKP EE+ E LTY +S+AAPFLKIPVKK NA+GQDSRLH+EIRRL AP+DK PYLCILIAPASRY+FHSFP+EE ADKAF+H+LEGIVM VVTEGMGMI+EAVRIRPA LTTTDPLLAKFLSPLLEGTRV+VAASSDKVVNAD+DAKTKESPLIAIMDGV+ADF
Sbjct: 6 ADLDKAAEEVNAVATEAGMLEALTKAVGSKCNCLTLFTPGNPLKPQEEEPEGLTYAESLAAPFLKIPVKKTNAVGQDSRLHVEIRRLPAPHDKAPYLCILIAPASRYVFHSFPIEETQADKAFMHVLEGIVMGVVTEGMGMIEEAVRIRPAQLTTTDPLLAKFLSPLLEGTRVSVAASSDKVVNADSDAKTKESPLIAIMDGVYADF 212 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig412.10608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig412.10608.1 >prot_H-paniculata_contig412.10608.1 ID=prot_H-paniculata_contig412.10608.1|Name=mRNA_H-paniculata_contig412.10608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=495bp MPPKKGARTTGNVADPTLCRHGGPRATSHILECINMMVNHNEFGITDEEFback to top mRNA from alignment at H-paniculata_contig412:3486..23378+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig412.10608.1 ID=mRNA_H-paniculata_contig412.10608.1|Name=mRNA_H-paniculata_contig412.10608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=19893bp|location=Sequence derived from alignment at H-paniculata_contig412:3486..23378+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig412:3486..23378+ >mRNA_H-paniculata_contig412.10608.1 ID=mRNA_H-paniculata_contig412.10608.1|Name=mRNA_H-paniculata_contig412.10608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2970bp|location=Sequence derived from alignment at H-paniculata_contig412:3486..23378+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |