mRNA_H-paniculata_contig41189.10605.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41189.10605.1
Unique NamemRNA_H-paniculata_contig41189.10605.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig41189.10605.1 vs. uniprot
Match: D7G1B2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1B2_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.150e-15
Identity = 34/55 (61.82%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    1 DGANWIQFFNRVKGEVPSYVVVENMQGEVFGGFAASAWSSTSKYYGTGESFLFSM 165
            DGA++   +NR++GE P++++VE+M+GEVFGGFA SAWSS  +YYGTGE FLF M
Sbjct:  477 DGASYTTLYNRIQGEEPTFLIVESMRGEVFGGFATSAWSSGCQYYGTGECFLFKM 531          
BLAST of mRNA_H-paniculata_contig41189.10605.1 vs. uniprot
Match: A0A6B2LNT5_9EUKA (TLDc domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LNT5_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 6.950e-8
Identity = 21/54 (38.89%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    4 GANWIQFFNRVKGEVPSYVVVENMQGEVFGGFAASAWSSTSKYYGTGESFLFSM 165
            G +W  FF+ ++   P+ +++ + QG  FGG+A+  W+  + +YGTGESF+FS+
Sbjct:   20 GISWTTFFSSLQDSGPTVILIRDSQGNSFGGYASQEWTPNTGFYGTGESFVFSI 73          
BLAST of mRNA_H-paniculata_contig41189.10605.1 vs. uniprot
Match: W7T6X3_9STRA (Tld family protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6X3_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 8.490e-8
Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 DGANWIQFFNRVKGEVPSYVVVENMQGEVFGGFAASAWSSTSK-YYGTGESFLFSM 165
            +GA+   FF + K + P+ +V+++MQG VFGGFA  AWS+  + YYG GESF++S+
Sbjct:  559 NGASLTTFFKKAKDKEPTLLVLKDMQGGVFGGFATRAWSAKGESYYGDGESFVWSL 614          
BLAST of mRNA_H-paniculata_contig41189.10605.1 vs. uniprot
Match: A0A4D9CRR4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRR4_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.180e-7
Identity = 26/56 (46.43%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 DGANWIQFFNRVKGEVPSYVVVENMQGEVFGGFAASAWSSTSK-YYGTGESFLFSM 165
            +GA+   FF + K + P+ +V+++MQG VFGGFA  +WS+  + YYG GESF++S+
Sbjct: 1327 NGASLTTFFKKAKDKEPTLLVLKDMQGGVFGGFATRSWSAKGESYYGDGESFVWSL 1382          
BLAST of mRNA_H-paniculata_contig41189.10605.1 vs. uniprot
Match: D7FL06_ECTSI (TLDc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL06_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 2.660e-6
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 1
Query:    1 DGANWIQFFNRVKGEVPSYVVVENMQGEVFGGFAASAWSSTSKYYGTGESFLFS 162
            DGA+        +G  P  +VVE+  G VFGGF A +   + KYYGTGESF++S
Sbjct:  635 DGASLWTLLQNCRGRGPCLIVVEDSWGYVFGGFVAGSMKESQKYYGTGESFVYS 688          
BLAST of mRNA_H-paniculata_contig41189.10605.1 vs. uniprot
Match: A0A2P6NL90_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NL90_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 2.670e-6
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    4 GANWIQFFNRVKGEVPSYVVVENMQGEVFGGFAASAWSSTSKYYGTGESFLFSM 165
            G +   F+NR +   PS +VVE+ +G VFG FA+ +W    ++YGTGE+F+F++
Sbjct:  818 GVSLKTFYNRTENAGPSLLVVEDDKGGVFGAFASDSWRVEPRFYGTGETFVFTL 871          
BLAST of mRNA_H-paniculata_contig41189.10605.1 vs. uniprot
Match: A0A7S1FBX5_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FBX5_NOCSC)

HSP 1 Score: 51.2 bits (121), Expect = 4.920e-6
Identity = 23/54 (42.59%), Postives = 33/54 (61.11%), Query Frame = 1
Query:    1 DGANWIQFFNRVKGEVPSYVVVENMQGEVFGGFAASAWSSTSKYYGTGESFLFS 162
            DG ++   +  V     + VVVE+ +G +FGGFA   W    K+YG+GESF+FS
Sbjct:  269 DGVSFATMYRNVGLRAKTLVVVEDSEGYIFGGFAPETWEPRGKFYGSGESFVFS 322          
BLAST of mRNA_H-paniculata_contig41189.10605.1 vs. uniprot
Match: UPI00035981C8 (MTOR-associated protein MEAK7 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035981C8)

HSP 1 Score: 50.1 bits (118), Expect = 1.270e-5
Identity = 22/52 (42.31%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    4 GANWIQFFNRVKGEVPSYVVVENMQGEVFGGFAASAWSSTSKYYGTGESFLF 159
            GA++ Q   RV+G+ P+Y++V++  G VFGGFA+  W    K+ G    FLF
Sbjct:  284 GASFSQLLQRVRGKGPTYLIVKDKNGNVFGGFASIPWEINPKFTGDSSCFLF 335          
BLAST of mRNA_H-paniculata_contig41189.10605.1 vs. uniprot
Match: J9I6Q3_9SPIT (TLD domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I6Q3_9SPIT)

HSP 1 Score: 50.1 bits (118), Expect = 1.270e-5
Identity = 23/53 (43.40%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 DGANWIQFFNRVKGEVPSYVVVENMQGEVFGGFAASAWSSTSKYYGTGESFLF 159
            DG +   FF + K    + +V+++  G +FGGF +  W ST+K+YGTGE+FLF
Sbjct:  378 DGDSVGTFFEKCKYWKYTLLVIKDTNGWIFGGFCSEPWKSTTKFYGTGENFLF 430          
BLAST of mRNA_H-paniculata_contig41189.10605.1 vs. uniprot
Match: A0A8K1CH96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH96_PYTOL)

HSP 1 Score: 49.7 bits (117), Expect = 1.710e-5
Identity = 20/41 (48.78%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   37 KGEVPSYVVVENMQGEVFGGFAASAWSSTSKYYGTGESFLF 159
            +G+  S ++VE   G+VFGGF  S+W++++ YYGTGE F+F
Sbjct:  235 QGKGASIIIVETCDGDVFGGFNTSSWTTSTSYYGTGECFVF 275          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41189.10605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G1B2_ECTSI1.150e-1561.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6B2LNT5_9EUKA6.950e-838.89TLDc domain-containing protein (Fragment) n=1 Tax=... [more]
W7T6X3_9STRA8.490e-848.21Tld family protein n=1 Tax=Nannochloropsis gaditan... [more]
A0A4D9CRR4_9STRA2.180e-746.43Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D7FL06_ECTSI2.660e-646.30TLDc domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A2P6NL90_9EUKA2.670e-642.59Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A7S1FBX5_NOCSC4.920e-642.59Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
UPI00035981C81.270e-542.31MTOR-associated protein MEAK7 n=1 Tax=Aplysia cali... [more]
J9I6Q3_9SPIT1.270e-543.40TLD domain containing protein n=1 Tax=Oxytricha tr... [more]
A0A8K1CH96_PYTOL1.710e-548.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41189contigH-paniculata_contig41189:1026..1670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue3.6e-13
Seed eggNOG ortholog2880.D7G1B2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.negative regulation of peptidyl-cysteine S-nitrosylation
EggNOG OGsCOG5142@1,KOG2372@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930257.0972412-CDS-H-paniculata_contig41189:1025..10611622930257.0972412-CDS-H-paniculata_contig41189:1025..1061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41189 1026..1061 -
1691481213.158983-CDS-H-paniculata_contig41189:1025..10611691481213.158983-CDS-H-paniculata_contig41189:1025..1061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41189 1026..1061 -
1622930257.1154485-CDS-H-paniculata_contig41189:1541..16701622930257.1154485-CDS-H-paniculata_contig41189:1541..1670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41189 1542..1670 -
1691481213.1720307-CDS-H-paniculata_contig41189:1541..16701691481213.1720307-CDS-H-paniculata_contig41189:1541..1670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41189 1542..1670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41189.10605.1prot_H-paniculata_contig41189.10605.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41189 1026..1670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41189.10605.1

>prot_H-paniculata_contig41189.10605.1 ID=prot_H-paniculata_contig41189.10605.1|Name=mRNA_H-paniculata_contig41189.10605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
DGANWIQFFNRVKGEVPSYVVVENMQGEVFGGFAASAWSSTSKYYGTGES
FLFSM
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mRNA from alignment at H-paniculata_contig41189:1026..1670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41189.10605.1 ID=mRNA_H-paniculata_contig41189.10605.1|Name=mRNA_H-paniculata_contig41189.10605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=645bp|location=Sequence derived from alignment at H-paniculata_contig41189:1026..1670- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGGGCGAATTGGATCCAGTTCTTTAACCGGGTGAAAGGAGAGGTGCC TTCGTACGTTGTGGTCGAGAACATGCAAGGGGAGGTGTTCGGTGGGTTCG CCGCAAGTGCTTGGTCTTCAACGAGCAAGGTGGGGATCATCGCAGCCACA AGTCTTCCTCCAGTGATGTGATTTTATATTGACAGGGGTAGTATTATGCT TTGTTGCGTTGTGGGTATTTGACGCCACAAGTAGGACTTGCCCCATACAT ATACCACTAATATTTCCATTTGTTGGACATGTATTTATTTGTGTTCGTTA TACGTGAATATTAGCTGGTAACGCGAAATATATATATTTTGCACCGTAGA GAGATGGATGCATCGCATGCGGTTGTGACCGGGACAATGATTTTGTTCGA CGATTGTGATTTTTTTTTTTCTCTACTGCGCTTAATTTATTGTGACCCAT TTTTTTTTGTGTCAAGTAATAGCAGTTATGAGAGGTTTCCCGATGTTGCT TGACATTTTTTGTATAAACATCTGCTTTTCCTCAAGCGATATCCTGCGTT TTTGTTGCCTGTACTGTCTGTTGTCTTTTTGTTTTTTGTTTTTTTTCTGT CATACGCAGTACTACGGAACCGGGGAGAGCTTCTTGTTTAGCATG
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Coding sequence (CDS) from alignment at H-paniculata_contig41189:1026..1670-

>mRNA_H-paniculata_contig41189.10605.1 ID=mRNA_H-paniculata_contig41189.10605.1|Name=mRNA_H-paniculata_contig41189.10605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig41189:1026..1670- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGGGCGAATTGGATCCAGTTCTTTAACCGGGTGAAAGGAGAGGTGCC
TTCGTACGTTGTGGTCGAGAACATGCAAGGGGAGGTGTTCGGTGGGTTCG
CCGCAAGTGCTTGGTCTTCAACGAGCAAGGATGGGGCGAATTGGATCCAG
TTCTTTAACCGGGTGAAAGGAGAGGTGCCTTCGTACGTTGTGGTCGAGAA
CATGCAAGGGGAGGTGTTCGGTGGGTTCGCCGCAAGTGCTTGGTCTTCAA
CGAGCAAGTACTACGGAACCGGGGAGAGCTTCTTGTTTAGCATGTACTAC
GGAACCGGGGAGAGCTTCTTGTTTAGCATG
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