mRNA_H-paniculata_contig410.10563.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig410.10563.1
Unique NamemRNA_H-paniculata_contig410.10563.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig410.10563.1 vs. uniprot
Match: D8LF73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF73_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 7.400e-23
Identity = 65/124 (52.42%), Postives = 84/124 (67.74%), Query Frame = 1 
Query:   49 VGPLTPAQRRAMKTRARARRLDQAARKKEEACRDARLAELDKTDGATTFSLKAMEPMKLSADNGNLNLLAQGGGGSDPTLARLSAPLPHLTRHPGRPPSLEAHQARFVDSCFTKHAVMRAFALT 420
            +GPLT A+RRA K  ARA ++D A  KKE A RDAR+AELD  D + TF++KAM+PMK+S DN +L++L   G G   +LARLSAPLPHLT HPGRPP ++  +     S      + RA +LT
Sbjct:  543 IGPLTVAERRARKAEARAAKIDAAKLKKETAARDARMAELDLQDSSKTFTVKAMDPMKISQDN-DLHMLPDLGEGPL-SLARLSAPLPHLTPHPGRPPCIQPQEF----SVSFSSGIRRASSLT 660
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BLAST of mRNA_H-paniculata_contig410.10563.1 vs. uniprot
Match: A0A6H5L7C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7C1_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.490e-21
Identity = 63/124 (50.81%), Postives = 83/124 (66.94%), Query Frame = 1 
Query:   49 VGPLTPAQRRAMKTRARARRLDQAARKKEEACRDARLAELDKTDGATTFSLKAMEPMKLSADNGNLNLLAQGGGGSDPTLARLSAPLPHLTRHPGRPPSLEAHQARFVDSCFTKHAVMRAFALT 420
            +GPLT A+RRA K +ARA ++D A  +KE A RD R+AELD  D + TF++KAM+PMK S DN +L++L   G G   +LARLSAPLPHLT HPGRPP ++  +     S      + RA +LT
Sbjct:  318 IGPLTVAERRARKAKARAAKIDAAKLQKETAARDGRMAELDLQDSSKTFTVKAMDPMKTSQDN-DLHMLPDLGEGPL-SLARLSAPLPHLTLHPGRPPCIQPQEF----SVSFPSGIRRASSLT 435
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig410.10563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF73_ECTSI7.400e-2352.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7C1_9PHAE1.490e-2150.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig410contigH-paniculata_contig410:2..1369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue5.5e-16
Seed eggNOG ortholog2880.D8LF73
Preferred nameENAH
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size645
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig410.10563.1prot_H-paniculata_contig410.10563.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig410 221..1288 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930252.1970305-UTR-H-paniculata_contig410:1..2201622930252.1970305-UTR-H-paniculata_contig410:1..220Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig410 2..220 -
1691481211.0306506-UTR-H-paniculata_contig410:1..2201691481211.0306506-UTR-H-paniculata_contig410:1..220Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig410 2..220 -
1622930252.2433026-UTR-H-paniculata_contig410:1288..13691622930252.2433026-UTR-H-paniculata_contig410:1288..1369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig410 1289..1369 -
1691481211.0719497-UTR-H-paniculata_contig410:1288..13691691481211.0719497-UTR-H-paniculata_contig410:1288..1369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig410 1289..1369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930252.2142458-CDS-H-paniculata_contig410:220..4421622930252.2142458-CDS-H-paniculata_contig410:220..442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig410 221..442 -
1691481211.0414243-CDS-H-paniculata_contig410:220..4421691481211.0414243-CDS-H-paniculata_contig410:220..442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig410 221..442 -
1622930252.227623-CDS-H-paniculata_contig410:1165..12881622930252.227623-CDS-H-paniculata_contig410:1165..1288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig410 1166..1288 -
1691481211.0588648-CDS-H-paniculata_contig410:1165..12881691481211.0588648-CDS-H-paniculata_contig410:1165..1288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig410 1166..1288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig410.10563.1

>prot_H-paniculata_contig410.10563.1 ID=prot_H-paniculata_contig410.10563.1|Name=mRNA_H-paniculata_contig410.10563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MKTRARARRLDQAARKKEEACRDARLAELDKTDGATTFSLKAMEPMKLSA
DNGNLNLLAQGGGGSDPTLARLSAPLPHLTRHPGRPPSLEAHQARFVDSC
FTKHAVMRAFALTG*
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mRNA from alignment at H-paniculata_contig410:2..1369-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig410.10563.1 ID=mRNA_H-paniculata_contig410.10563.1|Name=mRNA_H-paniculata_contig410.10563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig410:2..1369- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCATTGGGCGATAAAATTGGGGAAGTGGGTGGGGATGCAAGCCCTGT
AGGGCCACTCACCCCTGCTCAAAGGAGGGCAATGAAGACTCGAGCGCGGG
CAAGAAGACTGGACCAAGCCGCCCGCAAGAAGGAAGAAGCATGTCGGGAT
GCGAGATTGGCAGAGTTGGATAAAACCGATGGCGCCACAACCTTCTCCCT
CAAGGTGAGATGGTGTGGATACGTTTCATTCGTGTTTTTGATTGGAGACA
GATATACAGGAAAGCCCCGTGTACCCAAACTCCGCCATGCGGTAAGCTGA
AAATTACTGAAACTAGTGCTCTATAGTATGTTTTTTCGAACGTTATTTCC
GTAGTGTCAATGCTCTGTACGTTGCTCCCGAACATTAGCACGAGGTAAGG
AGACCATGGGGTTTGTGGGATTCTGGTTGTTTGCTGGGCCCCGGGGTAGC
TCTGGAGGGCTATTTATATATGAGACGGGGAAAAAGATCTTGTTAGGTAA
GACGTTCAGGGATGGGAGCGCCATCTTTAGTTGTTGTGTGCCGGACATAC
TGTTTCTCGGACACTAAAGGAGCAAGGCACATGCAAACAGACAGGAAAAC
GTCAGACCAGCGATGTAGATCCGCGTATTTCACACCGATCCTTACAGATA
TCGCTGTACCACCCAGACACCTGTTCACCCCATTTCATTATCAAGCATCG
CGTTTTGCCTGTATGCGCTGTATGCCCTGTCCTCGTCTTTGTCACTCAGG
CTGGGCGTTGTTTTCACCGTCGTCGTTGCAAACCGGTCGTTTCTCGTAAA
ATAAACTCACGAAACAGACTTCGCCAAAAACATTGTTTTTTTATCTCCAG
GAGACCATGGGAAAACCTGAACTAATGCACTAAACAGTATGCGTTTCGCT
GAAACCAAACTTACCATGCGATTCCAGGCGATGGAACCGATGAAACTATC
TGCCGATAACGGCAACCTTAATCTTCTGGCGCAGGGCGGTGGGGGTAGTG
ACCCCACTCTTGCACGCTTGAGTGCTCCACTGCCGCACCTCACGCGGCAT
CCAGGACGCCCTCCCTCTCTCGAGGCTCACCAGGCAAGGTTTGTGGACTC
TTGTTTTACCAAGCACGCAGTGATGAGGGCTTTCGCATTAACCGGGTAAA
AGTTCACGCTAAACAAATATCGCTGAGGCAGCACAGGCGATGGAAACTGA
AGAAAACGAGGGGGAAGCCATTTCCTCCATAAACTTCGGGGTAGCTATGG
CAAAATGTGGTACATGTCATAAAACCGCCGAAGGTTTTGTACTCAGATAA
AACAGAGTGTTCGTGAGATGGAGAATCTATTTTCAAGAAGAGAACGGGGG
CATATTGCAAACTGTATA
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Coding sequence (CDS) from alignment at H-paniculata_contig410:2..1369-

>mRNA_H-paniculata_contig410.10563.1 ID=mRNA_H-paniculata_contig410.10563.1|Name=mRNA_H-paniculata_contig410.10563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig410:2..1369- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACTCGAGCGCGGGCAAGAAGACTGGACCAAGCCGCCCGCAAGAA
GGAAGAAGCATGTCGGGATGCGAGATTGGCAGAGTTGGATAAAACCGATG
GCGCCACAACCTTCTCCCTCAAGATGAAGACTCGAGCGCGGGCAAGAAGA
CTGGACCAAGCCGCCCGCAAGAAGGAAGAAGCATGTCGGGATGCGAGATT
GGCAGAGTTGGATAAAACCGATGGCGCCACAACCTTCTCCCTCAAGGCGA
TGGAACCGATGAAACTATCTGCCGATAACGGCAACCTTAATCTTCTGGCG
CAGGGCGGTGGGGGTAGTGACCCCACTCTTGCACGCTTGAGTGCTCCACT
GCCGCACCTCACGCGGCATCCAGGACGCCCTCCCTCTCTCGAGGCTCACC
AGGCAAGGTTTGTGGACTCTTGTTTTACCAAGCACGCAGTGATGAGGGCT
TTCGCATTAACCGGGTAAGCGATGGAACCGATGAAACTATCTGCCGATAA
CGGCAACCTTAATCTTCTGGCGCAGGGCGGTGGGGGTAGTGACCCCACTC
TTGCACGCTTGAGTGCTCCACTGCCGCACCTCACGCGGCATCCAGGACGC
CCTCCCTCTCTCGAGGCTCACCAGGCAAGGTTTGTGGACTCTTGTTTTAC
CAAGCACGCAGTGATGAGGGCTTTCGCATTAACCGGGTAA
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