mRNA_H-paniculata_contig40805.10534.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40805.10534.1
Unique NamemRNA_H-paniculata_contig40805.10534.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40805.10534.1 vs. uniprot
Match: A0A0J7K416_LASNI (Lectin receptor kinase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K416_LASNI)

HSP 1 Score: 90.5 bits (223), Expect = 1.590e-19
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 WNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWAFAWKIDEQGNLTKPKARLVARGFSHQHNVDFLEVFAPTVATSSVKMVIAVAVENDWGMWQLD 294
            W EA+  E + +E    WT V ++ KG   +SA+W F  K+DE+GN+ + KARLVARG+S +  +D+ E FAP V   +V+ ++A A  N + + Q D
Sbjct:  189 WKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAPVVRYETVRTLLAEAAMNKYEIGQFD 286          
BLAST of mRNA_H-paniculata_contig40805.10534.1 vs. uniprot
Match: A0A0L9TUK8_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9TUK8_PHAAN)

HSP 1 Score: 91.3 bits (225), Expect = 2.360e-19
Identity = 39/98 (39.80%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 WNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWAFAWKIDEQGNLTKPKARLVARGFSHQHNVDFLEVFAPTVATSSVKMVIAVAVENDWGMWQLD 294
            W EA+  E + +E  K W   D+   G   +  +W F  K++E GN+ K KARLVA+G+S Q+ VD+ EVFAP     +V++++A+A ++ W ++QLD
Sbjct:  848 WREAMNAEIQAIEKNKTWELTDAPT-GITPIGVKWVFKTKLNEHGNIEKHKARLVAKGYSQQYGVDYTEVFAPVARLDTVRVLLAIAAQHKWEVFQLD 944          
BLAST of mRNA_H-paniculata_contig40805.10534.1 vs. uniprot
Match: A0A0J7K788_LASNI (Retrotransposon ty1-copia subclass n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K788_LASNI)

HSP 1 Score: 89.0 bits (219), Expect = 4.220e-19
Identity = 41/98 (41.84%), Postives = 68/98 (69.39%), Query Frame = 1
Query:    1 WNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWAFAWKIDEQGNLTKPKARLVARGFSHQHNVDFLEVFAPTVATSSVKMVIAVAVENDWGMWQLD 294
            W EA++ E++ L+  +AW  VD +  G  VV+++W F  K DE+GN T+ KARLVA+G + +H +D+ E F+P V TS+++++++VA+E D  +  LD
Sbjct:    9 WLEAMKNEYKSLKQNEAWILVD-LPAGRRVVNSKWIFKIKKDEKGNTTRYKARLVAKGCTQRHGIDYFETFSPVVRTSTIRLLMSVAIEMDLKIRHLD 105          
BLAST of mRNA_H-paniculata_contig40805.10534.1 vs. uniprot
Match: A0A0J7KM48_LASNI (Integrase catalytic domain-containing protein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KM48_LASNI)

HSP 1 Score: 90.5 bits (223), Expect = 4.280e-19
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 WNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWAFAWKIDEQGNLTKPKARLVARGFSHQHNVDFLEVFAPTVATSSVKMVIAVAVENDWGMWQLD 294
            W EA+  E + +E    WT V ++ KG   +SA+W F  K+DE+GN+ + KARLVARG+S +  +D+ E FAP V   +V+ ++A A  N + + Q D
Sbjct:  564 WKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAPVVRYETVRTLLAEAAMNKYEIGQFD 661          
BLAST of mRNA_H-paniculata_contig40805.10534.1 vs. uniprot
Match: A0A5E4G2P8_PRUDU (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G2P8_PRUDU)

HSP 1 Score: 87.8 bits (216), Expect = 6.050e-19
Identity = 36/98 (36.73%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 WNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWAFAWKIDEQGNLTKPKARLVARGFSHQHNVDFLEVFAPTVATSSVKMVIAVAVENDWGMWQLD 294
            W EA+  E + +E  + W   D + KG   +  +W F  K++++G + K KARLVA+G+  +H +D+ EVFAP     ++++VI++A +N W ++QLD
Sbjct:    3 WREAMDNEIKSIEKNQTWELTD-LPKGKQTIGVKWVFRTKLNKKGEVDKHKARLVAKGYKQKHGIDYKEVFAPVARHDTIRLVISLAAQNSWQIFQLD 99          
BLAST of mRNA_H-paniculata_contig40805.10534.1 vs. uniprot
Match: A0A5A7SSH2_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SSH2_CUCME)

HSP 1 Score: 88.2 bits (217), Expect = 7.620e-19
Identity = 36/98 (36.73%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 WNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWAFAWKIDEQGNLTKPKARLVARGFSHQHNVDFLEVFAPTVATSSVKMVIAVAVENDWGMWQLD 294
            W  A+  E + +E  K WT ++ +  G+  +  +W +  K +E G + K KARLVA+G+S QH +D+ +VFAP     +++M++A+A + DW ++QLD
Sbjct:  124 WRLAMDNEIKSIEKNKTWTLIE-LPSGAKRIGVKWVYKTKYNEHGKVDKNKARLVAKGYSQQHEIDYTKVFAPVARMDTIRMIVALAAQKDWKIFQLD 220          
BLAST of mRNA_H-paniculata_contig40805.10534.1 vs. uniprot
Match: A0A151SRC1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SRC1_CAJCA)

HSP 1 Score: 87.8 bits (216), Expect = 9.100e-19
Identity = 37/98 (37.76%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    1 WNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWAFAWKIDEQGNLTKPKARLVARGFSHQHNVDFLEVFAPTVATSSVKMVIAVAVENDWGMWQLD 294
            W EA+ +E + +E  K W   D+  KG   +  +W F  K++E+G++ K KARLV +G+S Q+ VD+ EVFAP     +V++++A+A ++ W +++LD
Sbjct:  185 WREAMNMEIQAIERNKTWELTDAP-KGVTPIGVKWVFKTKLNERGHVEKHKARLVEKGYSQQYGVDYTEVFAPVARLDTVRVLLALAAQHRWEVFELD 281          
BLAST of mRNA_H-paniculata_contig40805.10534.1 vs. uniprot
Match: A0A4Y1RBF6_PRUDU (ADP glucose pyrophosphorylase large subunit 1 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RBF6_PRUDU)

HSP 1 Score: 89.4 bits (220), Expect = 1.100e-18
Identity = 37/98 (37.76%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 WNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWAFAWKIDEQGNLTKPKARLVARGFSHQHNVDFLEVFAPTVATSSVKMVIAVAVENDWGMWQLD 294
            W EA+  E + +E  + W   D + KG   +  +W F  K++E+G + K KARLVA+G+  +H +D+ EVFAP     ++++VI++A +N W ++QLD
Sbjct:  416 WREAMDNEIKSIEKNQTWELTD-LPKGKQTIGVKWVFRTKLNEKGEVDKHKARLVAKGYKQKHGIDYKEVFAPVARHDTIRLVISLAAQNSWQIFQLD 512          
BLAST of mRNA_H-paniculata_contig40805.10534.1 vs. uniprot
Match: A0A4Y1R4M3_PRUDU (ADP glucose pyrophosphorylase large subunit 1 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R4M3_PRUDU)

HSP 1 Score: 89.4 bits (220), Expect = 1.120e-18
Identity = 37/98 (37.76%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 WNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWAFAWKIDEQGNLTKPKARLVARGFSHQHNVDFLEVFAPTVATSSVKMVIAVAVENDWGMWQLD 294
            W EA+  E + +E  + W   D + KG   +  +W F  K++E+G + K KARLVA+G+  +H +D+ EVFAP     ++++VI++A +N W ++QLD
Sbjct:  858 WREAMDNEIKSIEKNQTWELTD-LPKGKQTIGVKWVFRTKLNEKGEVDKHKARLVAKGYKQKHGIDYKEVFAPVARHDTIRLVISLAAQNSWQIFQLD 954          
BLAST of mRNA_H-paniculata_contig40805.10534.1 vs. uniprot
Match: A0A2K3MGT9_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MGT9_TRIPR)

HSP 1 Score: 88.2 bits (217), Expect = 1.900e-18
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 1
Query:    1 WNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWAFAWKIDEQGNLTKPKARLVARGFSHQHNVDFLEVFAPTVATSSVKMVIAVAVENDWGMWQLD 294
            W  A+  E E +E    W   D +  G+  +  +W F  K++E G + K KARLVA+G+S Q+ VD+ EVFAP     +++MVIA+A +  W ++QLD
Sbjct:  272 WRNAMNNEMEAIEKNNTWELTD-LPTGAKTIGLKWIFKTKLNENGEVEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQKGWNVYQLD 368          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40805.10534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7K416_LASNI1.590e-1940.82Lectin receptor kinase n=1 Tax=Lasius niger TaxID=... [more]
A0A0L9TUK8_PHAAN2.360e-1939.80Uncharacterized protein n=1 Tax=Phaseolus angulari... [more]
A0A0J7K788_LASNI4.220e-1941.84Retrotransposon ty1-copia subclass n=1 Tax=Lasius ... [more]
A0A0J7KM48_LASNI4.280e-1940.82Integrase catalytic domain-containing protein n=2 ... [more]
A0A5E4G2P8_PRUDU6.050e-1936.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5A7SSH2_CUCME7.620e-1936.73Retrovirus-related Pol polyprotein from transposon... [more]
A0A151SRC1_CAJCA9.100e-1937.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1RBF6_PRUDU1.100e-1837.76ADP glucose pyrophosphorylase large subunit 1 n=1 ... [more]
A0A4Y1R4M3_PRUDU1.120e-1837.76ADP glucose pyrophosphorylase large subunit 1 n=1 ... [more]
A0A2K3MGT9_TRIPR1.900e-1839.80Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40805contigH-paniculata_contig40805:1565..1858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score83.6
Seed ortholog evalue5.7e-14
Seed eggNOG ortholog225117.XP_009372975.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37W11@33090,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930247.7580686-CDS-H-paniculata_contig40805:1564..18581622930247.7580686-CDS-H-paniculata_contig40805:1564..1858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40805 1565..1858 +
1691481209.11046-CDS-H-paniculata_contig40805:1564..18581691481209.11046-CDS-H-paniculata_contig40805:1564..1858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40805 1565..1858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40805.10534.1prot_H-paniculata_contig40805.10534.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40805 1565..1858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40805.10534.1

>prot_H-paniculata_contig40805.10534.1 ID=prot_H-paniculata_contig40805.10534.1|Name=mRNA_H-paniculata_contig40805.10534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
WNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWAFAWKIDEQGNLTKP
KARLVARGFSHQHNVDFLEVFAPTVATSSVKMVIAVAVENDWGMWQLD
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mRNA from alignment at H-paniculata_contig40805:1565..1858+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40805.10534.1 ID=mRNA_H-paniculata_contig40805.10534.1|Name=mRNA_H-paniculata_contig40805.10534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig40805:1565..1858+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAATGAGGCAGTCAGAGTAGAGTTTGAGGGCTTGGAAAATCTCAAAGC TTGGACTTATGTAGATAGTGTGCGGAAAGGTTCCAATGTTGTCAGTGCGA GATGGGCATTTGCATGGAAAATTGATGAGCAGGGGAACCTTACAAAGCCA AAGGCAAGGCTTGTAGCTCGAGGGTTTAGCCACCAACACAACGTTGATTT TCTCGAAGTGTTTGCTCCTACGGTAGCCACTTCCAGTGTGAAGATGGTAA TTGCTGTTGCTGTCGAAAACGATTGGGGAATGTGGCAACTTGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig40805:1565..1858+

>mRNA_H-paniculata_contig40805.10534.1 ID=mRNA_H-paniculata_contig40805.10534.1|Name=mRNA_H-paniculata_contig40805.10534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig40805:1565..1858+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAATGAGGCAGTCAGAGTAGAGTTTGAGGGCTTGGAAAATCTCAAAGC
TTGGACTTATGTAGATAGTGTGCGGAAAGGTTCCAATGTTGTCAGTGCGA
GATGGGCATTTGCATGGAAAATTGATGAGCAGGGGAACCTTACAAAGCCA
AAGGCAAGGCTTGTAGCTCGAGGGTTTAGCCACCAACACAACGTTGATTT
TCTCGAAGTGTTTGCTCCTACGGTAGCCACTTCCAGTGTGAAGATGGTAA
TTGCTGTTGCTGTCGAAAACGATTGGGGAATGTGGCAACTTGATTGGAAT
GAGGCAGTCAGAGTAGAGTTTGAGGGCTTGGAAAATCTCAAAGCTTGGAC
TTATGTAGATAGTGTGCGGAAAGGTTCCAATGTTGTCAGTGCGAGATGGG
CATTTGCATGGAAAATTGATGAGCAGGGGAACCTTACAAAGCCAAAGGCA
AGGCTTGTAGCTCGAGGGTTTAGCCACCAACACAACGTTGATTTTCTCGA
AGTGTTTGCTCCTACGGTAGCCACTTCCAGTGTGAAGATGGTAATTGCTG
TTGCTGTCGAAAACGATTGGGGAATGTGGCAACTTGAT
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