mRNA_H-paniculata_contig408.10531.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig408.10531.1
Unique NamemRNA_H-paniculata_contig408.10531.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 2.480e-92
Identity = 153/273 (56.04%), Postives = 197/273 (72.16%), Query Frame = 1
Query:    4 SSMATLTAVASMLATATIT--QALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDD-NCGFLLESLCMEG-AEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYT---NEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVLPAMGD-----NLWV 786
            SS+A+L A+A +L   TIT  +AL+V TP+   TVV+G PY V W G+S D RF++DL YCGSYS+CF++  CGF L ++C EG   GC   A+    V  PEPLGG S+ GY++RIAEVG   D+ RCSDDFYL++S D P VG  G  +I VV+PTA+++A++GE YTVEFDYDNGFG  +GRFKIDLY     +G GDCG WV S+CDKPD+GC DS G+Y++V+P  +E  MYKIRVG+FGDD++YACS +FEV+ A  D      LWV
Sbjct:    3 SSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAADAAGAAGLWV 273          
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 9.350e-92
Identity = 151/274 (55.11%), Postives = 194/274 (70.80%), Query Frame = 1
Query:    4 SSMATLTAVASMLA-TATITQALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDD--NCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVLP------AMGDNLWV*NES 798
            SS+A LTA+A +L  T T T+ALRV TP+   +V +G PY V W G+  D RF+VDL YCGSYSFCF +  +CGF + ++C E  + C +  +    V  PEP+ G S+NGY+VRI+EVG   D+ RCS+DFYLVAS DV   G  G  ++ VV+P A ++AV+GE YTVEFDYDNGFG  +GRFKIDLY  EGNGDCG WV S+CDKPD+GC+DS G+YD+V+P  +E  MYKIRVG+FGDDS+YACS +FE+        A G  LW+ + S
Sbjct:    3 SSVAFLTALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVG--TDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGVLAAGGGLWMDSTS 274          
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 7.200e-83
Identity = 134/239 (56.07%), Postives = 174/239 (72.80%), Query Frame = 1
Query:   52 TITQALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFD--DNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVLP 762
            T T+ALRV TP+   TVV+  PY V W G+SPD RF++DL YCGSYSFCF+  D CGF + +LC EG + C    +    V +PEP+ G S++GY+VRI +VG   ++ RCSD+FYL++S D     G    ++ VV+P++ ++AV+G  YTVEFDYDNGFG   GRFKIDLY  EG GDCG WV S+CDKPD+GC D+ G+YDIV+P  +E  MYKIRVG+FGDDSV+ACS +FEV+P
Sbjct:   20 TDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVG--TETFRCSDEFYLMSSADASDQDG---PTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVP 253          
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 4.170e-77
Identity = 126/234 (53.85%), Postives = 163/234 (69.66%), Query Frame = 1
Query:   64 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVLPA 765
            AL V TP+EG  VVA   Y VEWTG+  + R+++DL YCGS   C +D CG  + +LC  G +GC  D  G YD++MPEP+ G S +GYKVR+A+V    DS  CSD+FYL+A  + P  G  G   + V SP++   A +GEEYTVEFDYDNG G++VGRF IDLY+  G+GDCG ++ ++CDKP IGCKDS G+YD+ +P  AE+ MY IRVG F DDSVY CS+ FE+L A
Sbjct:    7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDECGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGA 236          
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 3.230e-74
Identity = 122/237 (51.48%), Postives = 159/237 (67.09%), Query Frame = 1
Query:   55 ITQALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVLPA 765
            +  AL V TP+ G  VV+   Y VEW+G+  + RF++DL YC S   C +D CG  + +LC  G +GC  D  G YD++MPEP+ G S +GYKVR+A+V    DS  CSD+FYL+A  D P     G   + V SP+    A +GEEYTVEFDYDNG G++VGRF IDLY   G+GDCG ++ ++CDKP IGCKDS G+YD+ +P  AE+ MY IRVG F D+SVY CS+ FE+L A
Sbjct:   17 VASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDECGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDE-DSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGA 249          
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 5.200e-72
Identity = 120/231 (51.95%), Postives = 162/231 (70.13%), Query Frame = 1
Query:   64 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEV 756
            AL+V+TPS+G+TV+A   Y VEWTG+S D RF++DL YCGS   C +D+CG  + +LC  G +GC  D  G YD++MPEP+ G S +GYKVR+ ++    D+  CSD+FYL+AS++ P VG     ++ V SP +  +A +  EYTVEFDYDNG G++V RF IDLY  +G GDCG +V SICDKP IGCKDS G+YD+ +P   ++  YKIRV  F DDS+Y+CS  F +
Sbjct:   19 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245          
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 1.730e-69
Identity = 121/232 (52.16%), Postives = 153/232 (65.95%), Query Frame = 1
Query:   64 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVL 759
            AL V TPS  + VVA   Y VEWTG+    RF++DL +CGS   C +D+CG  + +LC  G EGC  D  G YD++MPEP+ G S++GYKVR+ +V    DS+ CSD FYL+AS D P  G      + V SP     A +GEEYTVEFDYDNG G+ V RF IDLY  +G+GDCG +V SICDKP IGCKDS G+YD+ +P   E+  YKIRVG F D+ +Y CS  F ++
Sbjct:   19 ALEVVTPSADLIVVADRTYTVEWTGAD-SGRFEIDLYHCGS--MCMEDSCGDWVTALCPYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVSDE-DSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245          
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 5.960e-69
Identity = 124/232 (53.45%), Postives = 158/232 (68.10%), Query Frame = 1
Query:   64 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVL 759
            AL V +P+ G  VVA S Y VEWTG++   R+D+DL YCGS   C +D CG  + +LC  G +GC  D  G YDV+MPEP+ G SS GYKV + +     D   CS DF L+AST+ P     GA  + V SP+    A++G EYTVEFDYDNG G++V RF IDLY++ G+GDCG +V +ICDKP IGCKDS G+YD+V+P   ES MY IRVGVF DD VY CS++FE++
Sbjct:   19 ALEVVSPAAGDMVVADSAYTVEWTGAT-SGRYDIDLYYCGSV--CMEDECGDWVTALCPYGDDGCP-DTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGAY-VSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243          
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 3.780e-63
Identity = 116/231 (50.22%), Postives = 153/231 (66.23%), Query Frame = 1
Query:   64 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEV 756
            AL V +P  G++V+A   Y VEWTG++   RF++DL YC S  FC DD CG  + +LC  GA+GC  D+ G YD+IMPEP+ G SS GYKV +       D + CSDDF L+AS D P  G  G S + V SP+    A++GE YTVE+DY+NGFG++  RF +DLY   G GDCG +V ++CD+P IGC DS G+YD+ +P    + MY IRVGVF D+ +Y CS+ FEV
Sbjct:   19 ALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNS--FCMDDVCGDWVTALCPYGADGCP-DSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESD-MGCSDDFTLIASEDAPEAGEMGYS-LTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242          
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 3.630e-59
Identity = 103/193 (53.37%), Postives = 137/193 (70.98%), Query Frame = 1
Query:   64 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDS 642
            AL+V+TPS+G+TV+A   Y VEWTG+S D RF++DL YCGS   C +D+CG  + +LC  G +GC  D  G YD++MPEP+ G S +GYKVR+ ++    D+  CSD+FYL+AS++ P VG     ++ V SP +  +A +  EYTVEFDYDNG G+ V RF IDLY  +G+GDCG +V SICDKP IGCKDS
Sbjct:   20 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDA-DCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LEQ9_ECTSI2.480e-9256.04EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
A0A6H5KPZ5_9PHAE9.350e-9255.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FN59_ECTSI7.200e-8356.07EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LI46_ECTSI4.170e-7753.85EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFT9_9PHAE3.230e-7451.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRG9_9PHAE5.200e-7251.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI1.730e-6952.16EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3E8_ECTSI5.960e-6953.45Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JY62_9PHAE3.780e-6350.22GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7FH21_ECTSI3.630e-5953.37Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig408contigH-paniculata_contig408:6280..9513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size1605
Cds size780
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930247.3854597-UTR-H-paniculata_contig408:6279..62881622930247.3854597-UTR-H-paniculata_contig408:6279..6288Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig408 6280..6288 +
1691481208.9761727-UTR-H-paniculata_contig408:6279..62881691481208.9761727-UTR-H-paniculata_contig408:6279..6288Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig408 6280..6288 +
1622930247.509746-UTR-H-paniculata_contig408:8697..95131622930247.509746-UTR-H-paniculata_contig408:8697..9513Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig408 8698..9513 +
1691481209.0546017-UTR-H-paniculata_contig408:8697..95131691481209.0546017-UTR-H-paniculata_contig408:8697..9513Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig408 8698..9513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930247.414508-CDS-H-paniculata_contig408:6288..63921622930247.414508-CDS-H-paniculata_contig408:6288..6392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig408 6289..6392 +
1691481208.986818-CDS-H-paniculata_contig408:6288..63921691481208.986818-CDS-H-paniculata_contig408:6288..6392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig408 6289..6392 +
1622930247.4359794-CDS-H-paniculata_contig408:7052..71431622930247.4359794-CDS-H-paniculata_contig408:7052..7143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig408 7053..7143 +
1691481208.9988678-CDS-H-paniculata_contig408:7052..71431691481208.9988678-CDS-H-paniculata_contig408:7052..7143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig408 7053..7143 +
1622930247.4598932-CDS-H-paniculata_contig408:7516..78191622930247.4598932-CDS-H-paniculata_contig408:7516..7819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig408 7517..7819 +
1691481209.0078697-CDS-H-paniculata_contig408:7516..78191691481209.0078697-CDS-H-paniculata_contig408:7516..7819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig408 7517..7819 +
1622930247.4752839-CDS-H-paniculata_contig408:8169..83051622930247.4752839-CDS-H-paniculata_contig408:8169..8305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig408 8170..8305 +
1691481209.0267699-CDS-H-paniculata_contig408:8169..83051691481209.0267699-CDS-H-paniculata_contig408:8169..8305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig408 8170..8305 +
1622930247.4888635-CDS-H-paniculata_contig408:8551..86971622930247.4888635-CDS-H-paniculata_contig408:8551..8697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig408 8552..8697 +
1691481209.0429943-CDS-H-paniculata_contig408:8551..86971691481209.0429943-CDS-H-paniculata_contig408:8551..8697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig408 8552..8697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig408.10531.1prot_H-paniculata_contig408.10531.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig408 6289..8697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig408.10531.1

>prot_H-paniculata_contig408.10531.1 ID=prot_H-paniculata_contig408.10531.1|Name=mRNA_H-paniculata_contig408.10531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp
MATLTAVASMLATATITQALRVTTPSEGMTVVAGSPYPVEWTGSSPDARF
DVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLG
GISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVS
PTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSI
CDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVL
PAMGDNLWV*
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mRNA from alignment at H-paniculata_contig408:6280..9513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig408.10531.1 ID=mRNA_H-paniculata_contig408.10531.1|Name=mRNA_H-paniculata_contig408.10531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3234bp|location=Sequence derived from alignment at H-paniculata_contig408:6280..9513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTCCAGCATGGCGACCCTGACTGCAGTGGCGAGCATGCTGGCAACAGC GACAATTACCCAGGCGCTGCGTGTCACCACGCCGTCGGAGGGTATGACTG TGGTAGCTGGGAGGTTAGTGCAGATCATCTTTTTGCACAGGGGCTCATGT TTGGTACCTATTGCCACGCCTGATGTCAATACATGATGTGGCGGTCATCT TCGTGGGTCAGCTAGTGTTTGCATTAAAATATGGATGTCAGTTGGCATAC TGACTTGTAGGGCTGGAGGGTGGTTTTCGTGCCATATCTATCTGTTCCCC ACCTCAAGAACAGAGGAGAACAACACCTAACAGCGCGATAACGGGCATAG TGAGTCGCCGCTGTTCAAACAGGTCCACCGCATACGGTACCTACACCAGA GATAGATGATGTGCATGATCCTGCCCACAACAACTGAGTGCTTAACTTGT ATCTTGATTTGCGTGTTTTGTCAGATGAGTTTTGCCGTGCCGTTTTTTGC TTGGGAAGGGACATGTGATCTTATGATGCCACTGGTTGCTGCCGTCAAAT GCACCACGACTTTTGCCTGATTTTAAGGGCGCTCTCTGGTCATCGAGGTT TGTGGTCTCTCTCTCACCAAGATGAACCCATGTTGCTGTCCCATGTGTTT CTCATAGAGTGATGCATAACGCTGAGATGTCTCTTGCCCGCAAGCGCTGT CATGATAACCTATTGAGCTGTTCGTCGTATCAATCGTGTGTCTCCTGTTT CGTTTTGTTCTCTGTCGTCGTAGCCCCTACCCTGTGGAGTGGACGGGCTC CTCGCCAGACGCACGATTCGACGTCGACCTCACCTACTGTGGTTCCTACT CGTTTTGCTTCGATGTGGGTACCTGCCAACACATTCTACTACAGTACAAG AGATAGGACACCGTACTGTACAATATACTTACCGTACACTACCCTTGCAG CAGTGGGTACGTATTGGCAGGACAGCATCGCGTTTGAGATTTCGCTTGGT AGACTTTCAGATATCCGCGTATGTAGGACGTGTAGATATGGCATTGGCTA CGACTACAAGCACAAGTTGTAATCTAGCACTCAACATATCCTGTATAAAA AGGAGAAATCGGAATTGTATCAGTGTGCAAGTTTCTTTTTCTGTGACCTT CCGCTGATTGCCTCCCGCTAGTGACCGGGTTTCACTCCGATCACCCCCCT GCTGTCGTAACCATCGTGCCTCGCGTGCAATCCACAGGATAACTGCGGTT TCCTCCTGGAAAGCTTGTGCATGGAGGGAGCCGAGGGTTGCGCTTTGGAC GCCAACGGCGGCTACGATGTGATCATGCCAGAGCCGTTGGGAGGGATCTC CAGCAATGGCTACAAGGTGCGGATCGCAGAAGTCGGAGGCGGCTTCGACA GTGTGCGATGCTCGGACGACTTTTACTTGGTCGCATCCACGGACGTTCCC ATGGTTGGGGGAGGTGGGGCTTCGTCAATAGTTGTGGTTTCTCCGACGGC CGAGTCTGTCGCAGTTTCCGGGGAGGAGTATACTGTGGAGGTAAGGCTAC CGCGGTGGACGTACGTTTCGTTGATTGTGCGTTACTGTACAGTTTTCTCG AGCACAATAGTTGTCTAGGTATCGACGTTATGGCTTAAATAGGACATCGA GGACTCGAACCAGCGAACTTTTTCGTACACCTGCAAGACGTTCCTTTAAA TTTGAAGTCATGTGTATCAACAGCCATCGTTGTGTGTGTGTTTTGCAGGT ATCACACGTCATACTCTTGGCGAAGATCACGTTTGATAGAGCCCTTGAGC GAAGAAGAACCAATACCGTCACTGGCAACCCCAAGGGTCAGTTGTGTTCC CATTTCCAATGCTACTGTCCGTTTCATGCCTTGTGTTCAGTTTGACTACG ACAACGGGTTCGGCAACACGGTGGGACGGTTCAAGATTGATCTGTACACC AATGAGGGAAACGGTGACTGCGGCGGCTGGGTCGGTTCTATCTGCGACAA GCCTGACATCGGCTGCAAAGACTCGAGTGAGTTGTGTCGTTTGTACAAGA TATCGGCATTGTTCATGTTGGAGCGGTCTAGAAGGGAGTCATTCGAAGGA AAGTTGTCATGGGGACGTGTACGGCTAAAGCCACTATGATGTGTAATGAT ATACGCGTTCGACATGTCGAGTGGGTTCTCAAGTTGGCGTGCTGATAGCT ATCTCACATATATTTTTCTAATCTCGTTTGTGTTCCTCGTTTGTGACGAC CACATGCTACTTTTTGGATCAGCTGGAAACTACGACATCGTGATGCCGCC AGTAGCCGAATCCGCCATGTACAAGATTCGCGTAGGCGTGTTCGGGGACG ACTCTGTTTACGCTTGCTCTGAGGCGTTCGAGGTCTTGCCTGCTATGGGC GATAACCTCTGGGTATAGAACGAGTCAGTCATCATGACAGTGTGCACACG AAGTTTCTGATGTTGACCGGCGATGGCGGCAGTGAGGTGCTAGATGCGCA CATGTAGATGCGTACATGTATTCAGGCATTCGCAGTGACACGAAATCAGT TTCAGGCAGACTGTTTACTGGCGCTATGTCTTCTGTTAGGCATATAGAGC TATCCCAGAGATGTTGAGCACTGATGTATGCGTGTTTTTCGTTGTGATTG GTTTGTGTATGTTGGGTATGATGTGTTGTGTGTTGTGTACGAGATCGTGT TGGTTGTAGCCACTCTTCATGTCGTGCTGAGAGGGCCAACAGTCAATCGA GCACAATTTTGTTTGTTGAGATCAACCCTTGGGTTGCTGGGTATTGGTGT TCCCCTGGATCATGAGCTCCGGAATCGGTTGTCGAGGTACGTGAGCGGAT TTTGTGTCACGTCCATCGTGGGAAAGTAAATAGAAAGCGGGTACCCTTGG GTAGCCGAAGGAGTGTGTGGTAGCGAATTTGAAGTTAGGGTGGCTGATTG TGGCGGAGATGAAAACAACCGAGAAATAAAGAATGTGGGCGGGCCGGTTG CTTGCATGTATTCCGGCCGCTTGTTGGTTTTCATAGAGCAATGACCCGGT GGAGAGAATGACTGAAAGGGGTACCTTTTGGAGACAGTGTTTCAGTGCTA GGTGGGCTAATAAAGGGTCGAGAACCGTGCGATTCCGAACCATAACACAG CAGTCGCATGTGGGAAACATAGACTTCGCCTCAAGCTGGAAACCGATTGT CCTTGATGGTGAAATAGCTAATTTAATCGAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig408:6280..9513+

>mRNA_H-paniculata_contig408.10531.1 ID=mRNA_H-paniculata_contig408.10531.1|Name=mRNA_H-paniculata_contig408.10531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at H-paniculata_contig408:6280..9513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACCCTGACTGCAGTGGCGAGCATGCTGGCAACAGCGACAATTAC
CCAGGCGCTGCGTGTCACCACGCCGTCGGAGGGTATGACTGTGGTAGCTG
GGAGATGGCGACCCTGACTGCAGTGGCGAGCATGCTGGCAACAGCGACAA
TTACCCAGGCGCTGCGTGTCACCACGCCGTCGGAGGGTATGACTGTGGTA
GCTGGGAGCCCCTACCCTGTGGAGTGGACGGGCTCCTCGCCAGACGCACG
ATTCGACGTCGACCTCACCTACTGTGGTTCCTACTCGTTTTGCTTCGATC
CCCTACCCTGTGGAGTGGACGGGCTCCTCGCCAGACGCACGATTCGACGT
CGACCTCACCTACTGTGGTTCCTACTCGTTTTGCTTCGATGATAACTGCG
GTTTCCTCCTGGAAAGCTTGTGCATGGAGGGAGCCGAGGGTTGCGCTTTG
GACGCCAACGGCGGCTACGATGTGATCATGCCAGAGCCGTTGGGAGGGAT
CTCCAGCAATGGCTACAAGGTGCGGATCGCAGAAGTCGGAGGCGGCTTCG
ACAGTGTGCGATGCTCGGACGACTTTTACTTGGTCGCATCCACGGACGTT
CCCATGGTTGGGGGAGGTGGGGCTTCGTCAATAGTTGTGGTTTCTCCGAC
GGCCGAGTCTGTCGCAGTTTCCGGGGAGGAGTATACTGTGGAGGATAACT
GCGGTTTCCTCCTGGAAAGCTTGTGCATGGAGGGAGCCGAGGGTTGCGCT
TTGGACGCCAACGGCGGCTACGATGTGATCATGCCAGAGCCGTTGGGAGG
GATCTCCAGCAATGGCTACAAGGTGCGGATCGCAGAAGTCGGAGGCGGCT
TCGACAGTGTGCGATGCTCGGACGACTTTTACTTGGTCGCATCCACGGAC
GTTCCCATGGTTGGGGGAGGTGGGGCTTCGTCAATAGTTGTGGTTTCTCC
GACGGCCGAGTCTGTCGCAGTTTCCGGGGAGGAGTATACTGTGGAGTTTG
ACTACGACAACGGGTTCGGCAACACGGTGGGACGGTTCAAGATTGATCTG
TACACCAATGAGGGAAACGGTGACTGCGGCGGCTGGGTCGGTTCTATCTG
CGACAAGCCTGACATCGGCTGCAAAGACTCGATTTGACTACGACAACGGG
TTCGGCAACACGGTGGGACGGTTCAAGATTGATCTGTACACCAATGAGGG
AAACGGTGACTGCGGCGGCTGGGTCGGTTCTATCTGCGACAAGCCTGACA
TCGGCTGCAAAGACTCGACTGGAAACTACGACATCGTGATGCCGCCAGTA
GCCGAATCCGCCATGTACAAGATTCGCGTAGGCGTGTTCGGGGACGACTC
TGTTTACGCTTGCTCTGAGGCGTTCGAGGTCTTGCCTGCTATGGGCGATA
ACCTCTGGGTATAGCTGGAAACTACGACATCGTGATGCCGCCAGTAGCCG
AATCCGCCATGTACAAGATTCGCGTAGGCGTGTTCGGGGACGACTCTGTT
TACGCTTGCTCTGAGGCGTTCGAGGTCTTGCCTGCTATGGGCGATAACCT
CTGGGTATAG
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