mRNA_H-paniculata_contig408.10531.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 293 bits (749), Expect = 2.480e-92 Identity = 153/273 (56.04%), Postives = 197/273 (72.16%), Query Frame = 1
Query: 4 SSMATLTAVASMLATATIT--QALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDD-NCGFLLESLCMEG-AEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYT---NEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVLPAMGD-----NLWV 786
SS+A+L A+A +L TIT +AL+V TP+ TVV+G PY V W G+S D RF++DL YCGSYS+CF++ CGF L ++C EG GC A+ V PEPLGG S+ GY++RIAEVG D+ RCSDDFYL++S D P VG G +I VV+PTA+++A++GE YTVEFDYDNGFG +GRFKIDLY +G GDCG WV S+CDKPD+GC DS G+Y++V+P +E MYKIRVG+FGDD++YACS +FEV+ A D LWV
Sbjct: 3 SSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAADAAGAAGLWV 273
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 291 bits (744), Expect = 9.350e-92 Identity = 151/274 (55.11%), Postives = 194/274 (70.80%), Query Frame = 1
Query: 4 SSMATLTAVASMLA-TATITQALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDD--NCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVLP------AMGDNLWV*NES 798
SS+A LTA+A +L T T T+ALRV TP+ +V +G PY V W G+ D RF+VDL YCGSYSFCF + +CGF + ++C E + C + + V PEP+ G S+NGY+VRI+EVG D+ RCS+DFYLVAS DV G G ++ VV+P A ++AV+GE YTVEFDYDNGFG +GRFKIDLY EGNGDCG WV S+CDKPD+GC+DS G+YD+V+P +E MYKIRVG+FGDDS+YACS +FE+ A G LW+ + S
Sbjct: 3 SSVAFLTALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVG--TDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGVLAAGGGLWMDSTS 274
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 267 bits (683), Expect = 7.200e-83 Identity = 134/239 (56.07%), Postives = 174/239 (72.80%), Query Frame = 1
Query: 52 TITQALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFD--DNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVLP 762
T T+ALRV TP+ TVV+ PY V W G+SPD RF++DL YCGSYSFCF+ D CGF + +LC EG + C + V +PEP+ G S++GY+VRI +VG ++ RCSD+FYL++S D G ++ VV+P++ ++AV+G YTVEFDYDNGFG GRFKIDLY EG GDCG WV S+CDKPD+GC D+ G+YDIV+P +E MYKIRVG+FGDDSV+ACS +FEV+P
Sbjct: 20 TDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVG--TETFRCSDEFYLMSSADASDQDG---PTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVP 253
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 253 bits (646), Expect = 4.170e-77 Identity = 126/234 (53.85%), Postives = 163/234 (69.66%), Query Frame = 1
Query: 64 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVLPA 765
AL V TP+EG VVA Y VEWTG+ + R+++DL YCGS C +D CG + +LC G +GC D G YD++MPEP+ G S +GYKVR+A+V DS CSD+FYL+A + P G G + V SP++ A +GEEYTVEFDYDNG G++VGRF IDLY+ G+GDCG ++ ++CDKP IGCKDS G+YD+ +P AE+ MY IRVG F DDSVY CS+ FE+L A
Sbjct: 7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDECGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGA 236
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 245 bits (625), Expect = 3.230e-74 Identity = 122/237 (51.48%), Postives = 159/237 (67.09%), Query Frame = 1
Query: 55 ITQALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVLPA 765
+ AL V TP+ G VV+ Y VEW+G+ + RF++DL YC S C +D CG + +LC G +GC D G YD++MPEP+ G S +GYKVR+A+V DS CSD+FYL+A D P G + V SP+ A +GEEYTVEFDYDNG G++VGRF IDLY G+GDCG ++ ++CDKP IGCKDS G+YD+ +P AE+ MY IRVG F D+SVY CS+ FE+L A
Sbjct: 17 VASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDECGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDE-DSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGA 249
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 239 bits (611), Expect = 5.200e-72 Identity = 120/231 (51.95%), Postives = 162/231 (70.13%), Query Frame = 1
Query: 64 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEV 756
AL+V+TPS+G+TV+A Y VEWTG+S D RF++DL YCGS C +D+CG + +LC G +GC D G YD++MPEP+ G S +GYKVR+ ++ D+ CSD+FYL+AS++ P VG ++ V SP + +A + EYTVEFDYDNG G++V RF IDLY +G GDCG +V SICDKP IGCKDS G+YD+ +P ++ YKIRV F DDS+Y+CS F +
Sbjct: 19 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 233 bits (593), Expect = 1.730e-69 Identity = 121/232 (52.16%), Postives = 153/232 (65.95%), Query Frame = 1
Query: 64 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVL 759
AL V TPS + VVA Y VEWTG+ RF++DL +CGS C +D+CG + +LC G EGC D G YD++MPEP+ G S++GYKVR+ +V DS+ CSD FYL+AS D P G + V SP A +GEEYTVEFDYDNG G+ V RF IDLY +G+GDCG +V SICDKP IGCKDS G+YD+ +P E+ YKIRVG F D+ +Y CS F ++
Sbjct: 19 ALEVVTPSADLIVVADRTYTVEWTGAD-SGRFEIDLYHCGS--MCMEDSCGDWVTALCPYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVSDE-DSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 231 bits (589), Expect = 5.960e-69 Identity = 124/232 (53.45%), Postives = 158/232 (68.10%), Query Frame = 1
Query: 64 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEVL 759
AL V +P+ G VVA S Y VEWTG++ R+D+DL YCGS C +D CG + +LC G +GC D G YDV+MPEP+ G SS GYKV + + D CS DF L+AST+ P GA + V SP+ A++G EYTVEFDYDNG G++V RF IDLY++ G+GDCG +V +ICDKP IGCKDS G+YD+V+P ES MY IRVGVF DD VY CS++FE++
Sbjct: 19 ALEVVSPAAGDMVVADSAYTVEWTGAT-SGRYDIDLYYCGSV--CMEDECGDWVTALCPYGDDGCP-DTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGAY-VSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 216 bits (550), Expect = 3.780e-63 Identity = 116/231 (50.22%), Postives = 153/231 (66.23%), Query Frame = 1
Query: 64 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESAMYKIRVGVFGDDSVYACSEAFEV 756
AL V +P G++V+A Y VEWTG++ RF++DL YC S FC DD CG + +LC GA+GC D+ G YD+IMPEP+ G SS GYKV + D + CSDDF L+AS D P G G S + V SP+ A++GE YTVE+DY+NGFG++ RF +DLY G GDCG +V ++CD+P IGC DS G+YD+ +P + MY IRVGVF D+ +Y CS+ FEV
Sbjct: 19 ALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNS--FCMDDVCGDWVTALCPYGADGCP-DSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESD-MGCSDDFTLIASEDAPEAGEMGYS-LTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 205 bits (522), Expect = 3.630e-59 Identity = 103/193 (53.37%), Postives = 137/193 (70.98%), Query Frame = 1
Query: 64 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDVDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCALDANGGYDVIMPEPLGGISSNGYKVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGASSIVVVSPTAESVAVSGEEYTVEFDYDNGFGNTVGRFKIDLYTNEGNGDCGGWVGSICDKPDIGCKDS 642
AL+V+TPS+G+TV+A Y VEWTG+S D RF++DL YCGS C +D+CG + +LC G +GC D G YD++MPEP+ G S +GYKVR+ ++ D+ CSD+FYL+AS++ P VG ++ V SP + +A + EYTVEFDYDNG G+ V RF IDLY +G+GDCG +V SICDKP IGCKDS
Sbjct: 20 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDA-DCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig408.10531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig408.10531.1 >prot_H-paniculata_contig408.10531.1 ID=prot_H-paniculata_contig408.10531.1|Name=mRNA_H-paniculata_contig408.10531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp MATLTAVASMLATATITQALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFback to top mRNA from alignment at H-paniculata_contig408:6280..9513+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig408.10531.1 ID=mRNA_H-paniculata_contig408.10531.1|Name=mRNA_H-paniculata_contig408.10531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3234bp|location=Sequence derived from alignment at H-paniculata_contig408:6280..9513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig408:6280..9513+ >mRNA_H-paniculata_contig408.10531.1 ID=mRNA_H-paniculata_contig408.10531.1|Name=mRNA_H-paniculata_contig408.10531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at H-paniculata_contig408:6280..9513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |