mRNA_H-paniculata_contig4078.10528.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: D7FRA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA8_ECTSI) HSP 1 Score: 130 bits (327), Expect = 6.810e-37 Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 1
Query: 1 MGEDTGVQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKV 231
M ED GVQISFD++CRIRVLDPE FKHSE LEEECRGFV+KI+ FN S H+I EVLHENAARIDK+KLRAIGQRNKV
Sbjct: 1 MNEDNGVQISFDEECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKV 77
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A836CJD0_9STRA (Intraflagellar transport protein 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD0_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 9.960e-23 Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 1
Query: 19 VQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKV 231
VQ+SFD++CR+RVLDP+ FKHSE LEE C+ F K++ FN + H I VL +A+RI+KQKLRAIG RNKV
Sbjct: 10 VQVSFDEECRVRVLDPDVFKHSEELEENCKAFATKMQAFNAAVHGIVAVLDAHASRIEKQKLRAIGMRNKV 80
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A6V2PVC6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2PVC6_HETAK) HSP 1 Score: 86.7 bits (213), Expect = 1.000e-19 Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 10 DTGVQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKVHTRRRFR 252
D V+ISFDD+ +IRVLD E FKH+E LE EC FV KI+ F+ + HS+ EVL + A RI+ KL+AIGQRN+V R R
Sbjct: 2 DEKVEISFDDEYKIRVLDAEKFKHTEELERECTDFVKKIQDFHSNVHSLVEVLDKQAKRIEHAKLKAIGQRNQVEGERENR 82
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A7S2W6I1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6I1_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.140e-18 Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 7 EDTGVQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKV 231
E+ V I FD++ R+RVLDPE FKH+E L E+C GFV+KI+ F+ + H + +VL A +I+++KLRAIGQRN V
Sbjct: 2 EENRVPICFDEESRVRVLDPEKFKHTEELAEQCTGFVSKIQDFSGTVHVLVDVLGAQADKIEREKLRAIGQRNMV 76
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A7S2GG26_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG26_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.050e-17 Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 1 MGEDTGVQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKV 231
M D V I FDD+C+IRVL PE F H++ L E+C FVNKI F+ + H + E+L A I+ +KLR IGQRN+V
Sbjct: 5 MKNDDKVNICFDDECKIRVLSPEKFDHTKELAEQCTAFVNKIADFSDTVHVLVEILDSQAKMIETEKLRTIGQRNRV 81
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A812IV98_SYMPI (Ift20 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812IV98_SYMPI) HSP 1 Score: 72.0 bits (175), Expect = 1.560e-14 Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 19 VQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNK 228
+ I+FD+D RIRV+ E FK +E+LE EC GF KI+ F+ + + EVL A +I+++KLRAIGQRN+
Sbjct: 6 IDITFDEDNRIRVMPKEKFKQTESLEAECHGFAEKIQAFSGTVDMLVEVLDGEAQKIEEEKLRAIGQRNR 75
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A8J1ZXM1_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1ZXM1_9DINO) HSP 1 Score: 73.2 bits (178), Expect = 1.910e-14 Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 10 DTGVQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRN 225
D+ +QI+FD D IRVLDPE FK E L +EC+ F KI F + ++ +VL A RI+ +KLRAIGQ+N
Sbjct: 3 DSDIQITFDADNHIRVLDPEKFKQMENLSQECQNFTEKIHQFGTTVQTLVDVLDGQAKRIEFEKLRAIGQKN 74
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A7S2BN10_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2BN10_9DINO) HSP 1 Score: 70.9 bits (172), Expect = 3.450e-13 Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 19 VQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKV 231
+ I+FDD+ RIRV+ E FK +E LE++C+ F KIK F + + EVL A +I+ +KLRAIGQRN+
Sbjct: 43 IDITFDDENRIRVMPKEKFKQTENLEQQCQNFTEKIKSFGDTVQMLVEVLDGEANKIEYEKLRAIGQRNRA 113
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A812V2P0_9DINO (MP3 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812V2P0_9DINO) HSP 1 Score: 72.8 bits (177), Expect = 4.480e-13 Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 19 VQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKV 231
+ I+FD+D RIRV+ E FK +E+LE EC GF +KI+ F+ + + EVL A +I+++KLRAIGQRN+
Sbjct: 6 IDITFDEDNRIRVMPKEKFKQTESLEAECHGFADKIQAFSGTVDMLVEVLDGEAQKIEEEKLRAIGQRNRA 76
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: H3GSG3_PHYRM (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GSG3_PHYRM) HSP 1 Score: 69.7 bits (169), Expect = 4.610e-13 Identity = 31/76 (40.79%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 4 GEDTGVQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKV 231
G++ I FDDDC++RVLD ++ H++ L++E F K++ F++ + EV+ A RI+++KL+AIGQRN+V
Sbjct: 4 GDNQLPSICFDDDCQVRVLDKDNITHTQELDQESNQFATKLEEFHEIVKGVLEVMEGQAKRIEREKLKAIGQRNRV 79 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4078.10528.1 >prot_H-paniculata_contig4078.10528.1 ID=prot_H-paniculata_contig4078.10528.1|Name=mRNA_H-paniculata_contig4078.10528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp MGEDTGVQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHback to top mRNA from alignment at H-paniculata_contig4078:12809..13115+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4078.10528.1 ID=mRNA_H-paniculata_contig4078.10528.1|Name=mRNA_H-paniculata_contig4078.10528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=307bp|location=Sequence derived from alignment at H-paniculata_contig4078:12809..13115+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4078:12809..13115+ >mRNA_H-paniculata_contig4078.10528.1 ID=mRNA_H-paniculata_contig4078.10528.1|Name=mRNA_H-paniculata_contig4078.10528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig4078:12809..13115+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |