mRNA_H-paniculata_contig40715.10520.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40715.10520.1
Unique NamemRNA_H-paniculata_contig40715.10520.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.200e-23
Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 1
Query:   25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPF-SRDIPFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGETNFWWSF 417
            +A G+SQ  G D+     PVA ++TIR V +LA   D EL+ MDVD A+L   +EE++++K PP    + S     V RLRKSLYG+KQ GRN +  +D +  G G   S+TDPC Y      GE     SF
Sbjct:  300 IAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSTDPCLYVKFGSSGEMEMVNSF 431          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: A0A6A4ZM73_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZM73_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.760e-22
Identity = 55/124 (44.35%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDI---PFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDE 387
            VA GFSQ  G D+ E   PVA+ ++IR + SLA +Y  +L+ MDV  AFLNG ++EE+++K+P  L   + D    P V RL+KSLYG+KQ  R  N   DDF++  G + S  D C Y  R +
Sbjct:  370 VAKGFSQQYGVDYEETFAPVAKFASIRILLSLAAQYSLDLQQMDVKTAFLNGTLDEEIYMKIPEGLDVNNGDSKSGPLVLRLKKSLYGLKQAPRLWNKTFDDFMLSNGFNKSEADHCIYSKRTD 493          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.450e-22
Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = 1
Query:   25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPP---DLSPFSRDIPFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGE 396
            +A G+SQ  G D+     PVA ++TIR + ++A   D EL+ MDVD A+L   +EE+++VK PP      P   ++  V RLRKSLYG+KQ GRN +  +D +  G G   S+ DPC Y      GE
Sbjct:   42 IAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGE 166          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7TH08_9STRA (RNA-dependent DNA polymerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH08_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.420e-22
Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDI-PFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGE 396
            +A G+SQ  G D+ +   PVA M+TIR V +LA   D EL+ MDVD A+L   +EE++ +K PP    +  +    V RLRKSLYG+KQ GRN +  +D +  G     S+ DPC Y      GE
Sbjct:  127 IAKGYSQKYGYDYLQTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVHIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYAFHPSSADPCLYVKFGSSGE 251          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.120e-21
Identity = 55/125 (44.00%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDI-PFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGE 396
            +A G+SQ  G D+     PVA M+TIR V +LA   D EL+ MDVD A+L   +EE++++K PP    +  +    V RLRKSLYG+KQ GRN +  +D +  G GL  S  DPC Y      GE
Sbjct:  262 IAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGE 386          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.600e-21
Identity = 54/125 (43.20%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPF-SRDIPFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGE 396
            +A G+SQ  G D+     PVA ++TIR V +LA   D EL+ MDV+ A+L   +EE+++VK PP    + S     V RLRKSLYG+KQ GRN +  +D +  G G   S+ DPC Y      GE
Sbjct:   42 IAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGE 166          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: A0A7D9L0S1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L0S1_PARCT)

HSP 1 Score: 97.1 bits (240), Expect = 2.050e-21
Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = 1
Query:   25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDIPF-VRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGETNFWWSFILTTWSSLDAVRK*TNSSTTLVGVVG 495
            VA G+SQ+ G D+ E  +P ARM++IR +  LA++Y+  +  MDV  A+LN  ++ EL+V+ P   +   +D  + V +LRKSLYG+KQ GRN N+ L   LV  G   S +D C Y        T      I+  W  +D +   +N + TL  V G
Sbjct:   49 VAKGYSQIPGVDYHETFSPTARMTSIRILMQLAMQYNLTIHQMDVKTAYLNAPIDCELYVEQPEGFTMTGKDGEYLVYKLRKSLYGLKQSGRNWNSVLHSHLVSEGFIQSQSDSCVYTKISGKSMT------IVIIW--VDDIIIASNCTVTLTNVKG 198          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 101 bits (251), Expect = 3.170e-21
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 1
Query:   25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDIPFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGETNF 405
            VA GF+Q  G D+ ++  PVA + ++R + +LA  YD EL+ MDV AA+LNG ++EEL++ +PPD    + +     RL++SLYG+KQ GR  N  LD  L G+G +   ++ C Y  RD+ G+  F
Sbjct: 1051 VARGFTQKPGIDYQDVFAPVANLESVRIILALAARYDLELDQMDVSAAYLNGELDEELYL-MPPD--GVAIEPGHCWRLKRSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCF 1174          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: UPI0013E91BFE (hypothetical protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI0013E91BFE)

HSP 1 Score: 94.0 bits (232), Expect = 6.790e-21
Identity = 47/116 (40.52%), Postives = 75/116 (64.66%), Query Frame = 1
Query:   25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDIPFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSY 372
            VA GF+Q EG D+ E  +PV R ST+R +F+L+++  F +  +DV  AFLNG ++E +++++PP+L   S     V +LR+++YG+KQ  R  N  +DD L+ +G   S  +PC Y
Sbjct:   10 VAKGFTQKEGVDYKETYSPVLRYSTLRLLFALSVKLKFTITHLDVTTAFLNGYLDENVYMQVPPNLECKSNS---VLKLRRAIYGLKQSARAWNKRVDDCLLELGYVKSKLEPCLY 122          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.580e-21
Identity = 53/125 (42.40%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDI-PFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGE 396
            +A G+SQ  G D+ +   PVA M+TIR V +LA   D EL+ MDVD A+L   +EE++++K P     +  +    V RLRKSLYG+KQ GRN +  +D +  G G   S+ DPC Y      GE
Sbjct:  560 IAKGYSQEYGYDYLQTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGE 684          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T0D1_9STRA5.200e-2343.18Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A6A4ZM73_9STRA1.760e-2244.35Integrase catalytic domain-containing protein (Fra... [more]
W7TII5_9STRA4.450e-2241.73Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TH08_9STRA5.420e-2242.40RNA-dependent DNA polymerase n=1 Tax=Nannochlorops... [more]
W7TJ26_9STRA1.120e-2144.00Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA1.600e-2143.20Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
A0A7D9L0S1_PARCT2.050e-2137.34Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A1M2VT18_TRAPU3.170e-2141.73Retrovirus-related Pol polyprotein from transposon... [more]
UPI0013E91BFE6.790e-2140.52hypothetical protein n=1 Tax=Klebsiella pneumoniae... [more]
W7T174_9STRA7.580e-2142.40Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40715contigH-paniculata_contig40715:1001..1617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.6
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog4432.XP_010248475.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37ZPB@33090,3GPHS@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size617
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40715.10520.1prot_H-paniculata_contig40715.10520.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40715 1091..1303 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930245.94368-UTR-H-paniculata_contig40715:1000..10901622930245.94368-UTR-H-paniculata_contig40715:1000..1090Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40715 1001..1090 +
1691481208.369624-UTR-H-paniculata_contig40715:1000..10901691481208.369624-UTR-H-paniculata_contig40715:1000..1090Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40715 1001..1090 +
1622930245.9958205-UTR-H-paniculata_contig40715:1303..16171622930245.9958205-UTR-H-paniculata_contig40715:1303..1617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40715 1304..1617 +
1691481208.393222-UTR-H-paniculata_contig40715:1303..16171691481208.393222-UTR-H-paniculata_contig40715:1303..1617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40715 1304..1617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930245.9726946-CDS-H-paniculata_contig40715:1090..13031622930245.9726946-CDS-H-paniculata_contig40715:1090..1303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40715 1091..1303 +
1691481208.3797522-CDS-H-paniculata_contig40715:1090..13031691481208.3797522-CDS-H-paniculata_contig40715:1090..1303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40715 1091..1303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40715.10520.1

>prot_H-paniculata_contig40715.10520.1 ID=prot_H-paniculata_contig40715.10520.1|Name=mRNA_H-paniculata_contig40715.10520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRD
IPFVRRLRKSLYGIKQRGRN*
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mRNA from alignment at H-paniculata_contig40715:1001..1617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40715.10520.1 ID=mRNA_H-paniculata_contig40715.10520.1|Name=mRNA_H-paniculata_contig40715.10520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=617bp|location=Sequence derived from alignment at H-paniculata_contig40715:1001..1617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCAAGCTACAAAGCGCGACCGAGTGGCTCCAGGCTTTTCACAGGTGGA GGGTGAAGATTTCTTTGAAATCAGTACCCCCGTAGCTCGCATGTCGACGA TACGTACTGTTTTTAGCCTTGCCCTCGAATATGATTTCGAATTAGAAGGC ATGGACGTAGATGCGGCCTTTTTGAACGGCCTCGTAGAAGAAGAGCTGTT TGTTAAGCTACCCCCCGACCTTTCCCCGTTCTCCCGAGACATACCGTTTG TGCGCCGCCTGCGTAAAAGCCTGTATGGCATCAAGCAACGCGGCCGAAAC TAGAATAACGCTCTTGACGATTTTCTTGTTGGGATAGGACTCGACTGTTC CACTACCGATCCATGCTCGTACTTTTCTCGCGACGAAGGGGGAGAGACAA ACTTCTGGTGGTCGTTTATTCTGACGACCTGGTCATCGCTGGATGCCGTG AGAAAGTAGACGAATTCAAGCACGACATTAGTTGGCGTTGTAGGATGAAA GACTTGGGTTGTCTCTCGCGCGTGTTGGGAATAGAAGTACGACGGGACCG CCCTAATGGTACCATAACCATCGCGCAGGGTAGCTACATCCGCGAGGTAC GAAAAAGATATGATTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig40715:1001..1617+

>mRNA_H-paniculata_contig40715.10520.1 ID=mRNA_H-paniculata_contig40715.10520.1|Name=mRNA_H-paniculata_contig40715.10520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig40715:1001..1617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGATACGTACTGTTTTTAGCCTTGCCCTCGAATATGATTTCGA
ATTAGAAGGCATGGACGTAGATGCGGCCTTTTTGAACGGCCTCGTAGAAG
AAGAGCTGTTTGTTAAGCTACCCCCCGACCTTTCCCCGTTCTCCCGAGAC
ATACCGTTTGTGCGCCGCCTGCGTAAAAGCCTGTATGGCATCAAGCAACG
CGGCCGAAACTAGATGTCGACGATACGTACTGTTTTTAGCCTTGCCCTCG
AATATGATTTCGAATTAGAAGGCATGGACGTAGATGCGGCCTTTTTGAAC
GGCCTCGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCCGACCTTTCCCC
GTTCTCCCGAGACATACCGTTTGTGCGCCGCCTGCGTAAAAGCCTGTATG
GCATCAAGCAACGCGGCCGAAACTAG
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