prot_H-paniculata_contig40715.10520.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig40715.10520.1
Unique Nameprot_H-paniculata_contig40715.10520.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length71
Homology
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY)

HSP 1 Score: 70.9 bits (172), Expect = 1.180e-12
Identity = 33/69 (47.83%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    1 MSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDIPFVRRLRKSLYGIKQRGR 69
            + +IRT+ SLA  +D+EL  MDV +A+LNG++EE ++++LPP  +P  +    V RL+K+LYG+KQ GR
Sbjct: 1120 LPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQS-HLVCRLKKTLYGLKQAGR 1187          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: A0A060S825_PYCCI (CCHC-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S825_PYCCI)

HSP 1 Score: 68.2 bits (165), Expect = 1.050e-11
Identity = 32/69 (46.38%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    1 MSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDIPFVRRLRKSLYGIKQRGR 69
            +S+IRT+ +LA  YD+ELE M+V +A+LNG ++EE++++ PP  +P   +   V  L+K+LYG+KQ GR
Sbjct: 1054 LSSIRTILALAARYDWELEQMEVKSAYLNGRLDEEIYMRQPPGSAPAGLE-HLVCCLKKTLYGLKQAGR 1121          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.410e-11
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    1 MSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPF-SRDIPFVRRLRKSLYGIKQRGRN 70
            ++TIR V +LA   D EL+ MDVD A+L   +EE++++K PP    + S     V RLRKSLYG+KQ GRN
Sbjct:  322 ITTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRN 392          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.910e-11
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    1 MSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDI-PFVRRLRKSLYGIKQRGRN 70
            M+TIR V +LA   D EL+ MDVD A+L   +EE++++K PP    +  +    V RLRKSLYG+KQ GRN
Sbjct:  536 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRN 606          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 67.4 bits (163), Expect = 1.950e-11
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 0
Query:    2 STIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDIPFVRRLRKSLYGIKQRGR 69
            ++IRTV +LA  YD +++ MDV +AFLNG ++EE+++  PP    F  D   V RLRKSLYG+KQ  R
Sbjct: 1080 ASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPG---FDHDAGSVWRLRKSLYGLKQASR 1144          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7TH08_9STRA (RNA-dependent DNA polymerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH08_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.620e-11
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 0
Query:    1 MSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDI-PFVRRLRKSLYGIKQRGRN 70
            M+TIR V +LA   D EL+ MDVD A+L   +EE++ +K PP    +  +    V RLRKSLYG+KQ GRN
Sbjct:  149 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVHIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRN 219          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.800e-11
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    1 MSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPF-SRDIPFVRRLRKSLYGIKQRGRN 70
            ++TIR V +LA   D EL+ MDV+ A+L   +EE+++VK PP    + S     V RLRKSLYG+KQ GRN
Sbjct:   64 ITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRN 134          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: A0A6A4ZM73_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZM73_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.700e-11
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 0
Query:    2 STIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDI---PFVRRLRKSLYGIKQ 66
            ++IR + SLA +Y  +L+ MDV  AFLNG ++EE+++K+P  L   + D    P V RL+KSLYG+KQ
Sbjct:  393 ASIRILLSLAAQYSLDLQQMDVKTAFLNGTLDEEIYMKIPEGLDVNNGDSKSGPLVLRLKKSLYGLKQ 460          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: A0A6A4NZU9_LUPAL (Putative RNA-directed DNA polymerase n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4NZU9_LUPAL)

HSP 1 Score: 65.1 bits (157), Expect = 8.100e-11
Identity = 30/69 (43.48%), Postives = 50/69 (72.46%), Query Frame = 0
Query:    1 MSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDIPFVRRLRKSLYGIKQRGR 69
            M+TIR + +LAL + + +  +DV+ AFL+G ++EE+++K+P  LS  + +   VR+L+KSLYG+KQ  R
Sbjct:   10 MTTIRVILALALAHRWHIHQLDVNTAFLHGDLKEEVYMKIPQGLSIANTNSNMVRKLQKSLYGLKQASR 78          
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: UPI00098E78A6 (uncharacterized protein LOC109834849 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E78A6)

HSP 1 Score: 63.5 bits (153), Expect = 8.870e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 0
Query:    1 MSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDIPFVRRLRKSLYGIKQ 66
            M+T+RT+ S+A  YD+ L  MDV  AFL G +EEE+++ LPP L P  R+   +  L+K++YG+KQ
Sbjct:    1 MNTVRTLMSVATNYDWPLFQMDVRNAFLQGDLEEEVYMDLPPGL-PMPRESGLICGLKKAIYGLKQ 65          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G8RWY5_9APHY1.180e-1247.83Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A060S825_PYCCI1.050e-1146.38CCHC-type domain-containing protein n=1 Tax=Pycnop... [more]
W7T0D1_9STRA1.410e-1149.30Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TIQ5_9STRA1.910e-1149.30Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A1M2VV58_TRAPU1.950e-1150.00Retrovirus-related Pol polyprotein from transposon... [more]
W7TH08_9STRA3.620e-1149.30RNA-dependent DNA polymerase n=1 Tax=Nannochlorops... [more]
W7TCB8_9STRA4.800e-1149.30Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
A0A6A4ZM73_9STRA6.700e-1147.06Integrase catalytic domain-containing protein (Fra... [more]
A0A6A4NZU9_LUPAL8.100e-1143.48Putative RNA-directed DNA polymerase n=1 Tax=Lupin... [more]
UPI00098E78A68.870e-1146.97uncharacterized protein LOC109834849 n=1 Tax=Aspar... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..68
e-value: 6.8E-12
score: 45.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40715contigH-paniculata_contig40715:1091..1303 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40715.10520.1mRNA_H-paniculata_contig40715.10520.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig40715 1001..1617 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig40715.10520.1 ID=prot_H-paniculata_contig40715.10520.1|Name=mRNA_H-paniculata_contig40715.10520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRD
IPFVRRLRKSLYGIKQRGRN*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2