mRNA_H-paniculata_contig40534.10484.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40534.10484.1
Unique NamemRNA_H-paniculata_contig40534.10484.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40534.10484.1 vs. uniprot
Match: D7FY28_ECTSI (Phosphotriesterase-related protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY28_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 3.220e-32
Identity = 66/137 (48.18%), Postives = 86/137 (62.77%), Query Frame = 1
Query:    4 LKGAMQAQEKTGAPVLIQFPGFFQNFPAVTAVLAADMDDDKAQKAV--------SREIVFTGMCGGIGQSIDGQMQLLEKGFVLCFDCFGRCEWSSGADFYPSDEESAVRIAALVKSGYTRQILISQGVARRIHLSR 390
            L+GA  AQ+ TGAP++I    F +    V A++ A      +Q           SR+++  GM GG+ QS+  Q  LL KG VLCFDCFGR EW  G D+YPSDEESAVRIA LV+ G+  +I++S GV+RR HLSR
Sbjct:  220 LEGAAMAQQATGAPLMIACSHFVRWPMVVAALVIATAHWGSSQDGTAXXXXXXXSRKVIVAGMHGGVSQSLHHQASLLSKGIVLCFDCFGRVEWLPGPDYYPSDEESAVRIAELVRQGFAERIILSSGVSRRFHLSR 356          
BLAST of mRNA_H-paniculata_contig40534.10484.1 vs. uniprot
Match: A0A3B9BP55_9RHOB (Phosphotriesterase-related protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A3B9BP55_9RHOB)

HSP 1 Score: 59.3 bits (142), Expect = 1.000e-7
Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = 1
Query:    1 ILKGAMQAQEKTGAPVLIQFPGFFQNFPAVTAVLAADMDDDKAQKAVSREIVFTGMCGGIGQSIDGQMQLLEKGFVLCFDCFGRCEW-SSGADFYPSDEESAVRIAALVKSGYTRQILISQGV 366
            +L+ + +A  +TG P++I  P +F+    V  V+A      +  + + R I+        G+ +  Q  L ++G  L +D  G   W +  A   PSDEESA+ I+ L KSGY  QIL+SQ V
Sbjct:  184 VLRASARASVETGLPLMIHLPAWFRLAHEVLNVVA------ECGQPLDRVILCH--MNPSGKDVSYQKSLADRGAYLEYDMLGMDFWYADQAAQCPSDEESAIAISGLFKSGYGHQILLSQDV 298          
BLAST of mRNA_H-paniculata_contig40534.10484.1 vs. uniprot
Match: A0A4R1S986_9HYPH (Phosphotriesterase-related protein n=1 Tax=Rhizobium sp. BK251 TaxID=2512125 RepID=A0A4R1S986_9HYPH)

HSP 1 Score: 55.5 bits (132), Expect = 2.270e-6
Identity = 40/132 (30.30%), Postives = 68/132 (51.52%), Query Frame = 1
Query:    4 LKGAMQAQEKTGAPVLIQFPGFFQNFPAVTAVLAADMDDDKAQKAVSREIVFTGMC--GGIGQSIDGQMQLLEKGFVLCFDCFGRCEWSSGADFY-PSDEESAVRIAALVKSGYTRQILISQGVARRIHLSR 390
            L+GA QAQ +TG P+++  PG+F+    V  V+A++            E+  T +C        ++ Q +L  +G  + +D  G   + +      PSDEE+A  IA L ++GY  +IL+S  V  ++ L+R
Sbjct:  191 LRGAAQAQARTGLPLMVHLPGWFRLGHKVLDVVASE----------GAELRHTVLCHMNPSHDDLNYQGELAARGAFIEYDMIGMDFFYADQQVQCPSDEEAARAIARLAETGYLDRILLSHDVFLKMMLTR 312          
BLAST of mRNA_H-paniculata_contig40534.10484.1 vs. uniprot
Match: A0A523ZWY0_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A523ZWY0_9CHLR)

HSP 1 Score: 51.6 bits (122), Expect = 4.390e-5
Identity = 39/131 (29.77%), Postives = 66/131 (50.38%), Query Frame = 1
Query:    1 ILKGAMQAQEKTGAPVLIQFPGFFQNFPAVTAVLAADMDDDKAQKAVSREIVFTGMCGGIGQSIDGQMQLLEKGFVLCFDCFGRCEWSSGADF-YPSDEESAVRIAALVKSGYTRQILISQGVARRIHLSR 390
            +L+  ++A  +TGAP+ I  P   + F AV  +L  +            +++  GM   + Q  D +    ++G+ L FD FG+  W  G +   P D E    +  L+++G  RQ+LISQG+ R++ L R
Sbjct:  114 VLRAGVRASVRTGAPLAIDCPPG-EVFDAVHRLLGEE-------HMPPTKVLLCGMDRDMAQ--DERKCAADRGYYLLFDGFGKEWWIRGGERRIPVDPERLRWLKELIEAGCLRQLLISQGIDRKMLLVR 234          
BLAST of mRNA_H-paniculata_contig40534.10484.1 vs. uniprot
Match: S5Y4Y7_PARAH (Aryldialkylphosphatase n=2 Tax=Paracoccus TaxID=265 RepID=S5Y4Y7_PARAH)

HSP 1 Score: 51.6 bits (122), Expect = 5.080e-5
Identity = 38/124 (30.65%), Postives = 61/124 (49.19%), Query Frame = 1
Query:    4 LKGAMQAQEKTGAPVLIQFPGFFQNFPAVTAVLAADMDDDKAQKAVSREIVFTGMCGGIGQSIDG--QMQLLEKGFVLCFDCFGRCEWSSGADF-YPSDEESAVRIAALVKSGYTRQILISQGV 366
            L+GA QAQ +TG P+++  P +F+    V  +  A+  D K           T +C       D   Q +L  +G  + +D  G   + +  D   P+D +SA  I  L+++GY+RQIL+S  V
Sbjct:  194 LRGAAQAQARTGLPLMVHLPAWFRVAHKVLDICEAEGADLK----------HTILCHMNPSWADRTYQHELAARGAFIEYDMLGNLFYYADQDVDCPADADSARAIQGLIEAGYSRQILLSHDV 307          
BLAST of mRNA_H-paniculata_contig40534.10484.1 vs. uniprot
Match: UPI001D02B89A (phosphotriesterase-related protein n=1 Tax=Pseudogemmobacter sp. CC-YST710 TaxID=2755041 RepID=UPI001D02B89A)

HSP 1 Score: 51.2 bits (121), Expect = 6.890e-5
Identity = 38/130 (29.23%), Postives = 63/130 (48.46%), Query Frame = 1
Query:    4 LKGAMQAQEKTGAPVLIQFPGFFQNFPAVTAVLAADMDDDKAQKAVSREIVFTGMCGGIGQSIDG--QMQLLEKGFVLCFDCFGRCEWSSGADF-YPSDEESAVRIAALVKSGYTRQILISQGVARRIHL 384
            L+GA QAQ +TG P+++  P +F+    V  +  A+  D K           T +C       D   Q +L  +G  + +D  G   + +  D   P+D + A  I  L+++GY+RQIL+S  V  ++ L
Sbjct:  190 LRGAAQAQARTGLPLMVHLPAWFRLAHKVLDICEAEGADLK----------HTVLCHMNPSWADRNYQHELAARGAFIEYDMIGNLFYYADQDVDCPADADCARAIQGLIEAGYSRQILLSHDVFLKVML 309          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40534.10484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FY28_ECTSI3.220e-3248.18Phosphotriesterase-related protein n=2 Tax=Ectocar... [more]
A0A3B9BP55_9RHOB1.000e-733.33Phosphotriesterase-related protein n=1 Tax=Rhodoba... [more]
A0A4R1S986_9HYPH2.270e-630.30Phosphotriesterase-related protein n=1 Tax=Rhizobi... [more]
A0A523ZWY0_9CHLR4.390e-529.77Uncharacterized protein (Fragment) n=1 Tax=Anaerol... [more]
S5Y4Y7_PARAH5.080e-530.65Aryldialkylphosphatase n=2 Tax=Paracoccus TaxID=26... [more]
UPI001D02B89A6.890e-529.23phosphotriesterase-related protein n=1 Tax=Pseudog... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40534contigH-paniculata_contig40534:312..704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAryldialkylphosphatase
Ec32 orthologEc-27_006880.1
Exons1
Model size393
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930241.0134327-CDS-H-paniculata_contig40534:311..6891622930241.0134327-CDS-H-paniculata_contig40534:311..689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40534 312..689 -
1691481206.1000464-CDS-H-paniculata_contig40534:311..6891691481206.1000464-CDS-H-paniculata_contig40534:311..689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40534 312..689 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930241.0302413-UTR-H-paniculata_contig40534:689..7041622930241.0302413-UTR-H-paniculata_contig40534:689..704Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40534 690..704 -
1691481206.1116796-UTR-H-paniculata_contig40534:689..7041691481206.1116796-UTR-H-paniculata_contig40534:689..704Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40534 690..704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40534.10484.1prot_H-paniculata_contig40534.10484.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40534 312..689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40534.10484.1

>prot_H-paniculata_contig40534.10484.1 ID=prot_H-paniculata_contig40534.10484.1|Name=mRNA_H-paniculata_contig40534.10484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MQAQEKTGAPVLIQFPGFFQNFPAVTAVLAADMDDDKAQKAVSREIVFTG
MCGGIGQSIDGQMQLLEKGFVLCFDCFGRCEWSSGADFYPSDEESAVRIA
ALVKSGYTRQILISQGVARRIHLSR*
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mRNA from alignment at H-paniculata_contig40534:312..704-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40534.10484.1 ID=mRNA_H-paniculata_contig40534.10484.1|Name=mRNA_H-paniculata_contig40534.10484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=393bp|location=Sequence derived from alignment at H-paniculata_contig40534:312..704- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCTCAAGGGAGCGATGCAAGCCCAGGAAAAAACAGGGGCACCCGTGCT CATACAGTTCCCTGGATTCTTCCAGAATTTTCCAGCGGTAACAGCAGTGT TGGCCGCGGACATGGATGACGACAAAGCACAAAAAGCGGTTTCTAGGGAA ATTGTGTTTACGGGGATGTGTGGAGGTATCGGACAGTCAATTGACGGCCA AATGCAACTCCTCGAGAAGGGCTTTGTTTTGTGTTTCGACTGCTTTGGTC GATGTGAGTGGTCGTCGGGGGCCGATTTCTACCCTTCCGATGAGGAGAGC GCAGTGAGGATAGCAGCGCTCGTGAAGTCTGGGTATACGAGACAAATTCT TATTTCCCAGGGAGTGGCGAGGCGCATCCATCTGTCCAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig40534:312..704-

>mRNA_H-paniculata_contig40534.10484.1 ID=mRNA_H-paniculata_contig40534.10484.1|Name=mRNA_H-paniculata_contig40534.10484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig40534:312..704- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGCCCAGGAAAAAACAGGGGCACCCGTGCTCATACAGTTCCCTGG
ATTCTTCCAGAATTTTCCAGCGGTAACAGCAGTGTTGGCCGCGGACATGG
ATGACGACAAAGCACAAAAAGCGGTTTCTAGGGAAATTGTGTTTACGGGG
ATGTGTGGAGGTATCGGACAGTCAATTGACGGCCAAATGCAACTCCTCGA
GAAGGGCTTTGTTTTGTGTTTCGACTGCTTTGGTCGATGTGAGTGGTCGT
CGGGGGCCGATTTCTACCCTTCCGATGAGGAGAGCGCAGTGAGGATAGCA
GCGCTCGTGAAGTCTGGGTATACGAGACAAATTCTTATTTCCCAGGGAGT
GGCGAGGCGCATCCATCTGTCCAGGTGAATGCAAGCCCAGGAAAAAACAG
GGGCACCCGTGCTCATACAGTTCCCTGGATTCTTCCAGAATTTTCCAGCG
GTAACAGCAGTGTTGGCCGCGGACATGGATGACGACAAAGCACAAAAAGC
GGTTTCTAGGGAAATTGTGTTTACGGGGATGTGTGGAGGTATCGGACAGT
CAATTGACGGCCAAATGCAACTCCTCGAGAAGGGCTTTGTTTTGTGTTTC
GACTGCTTTGGTCGATGTGAGTGGTCGTCGGGGGCCGATTTCTACCCTTC
CGATGAGGAGAGCGCAGTGAGGATAGCAGCGCTCGTGAAGTCTGGGTATA
CGAGACAAATTCTTATTTCCCAGGGAGTGGCGAGGCGCATCCATCTGTCC
AGGTGA
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