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Homology
BLAST of mRNA_H-paniculata_contig4049.10474.1 vs. uniprot
Match: A0A6H5KX58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX58_9PHAE) HSP 1 Score: 208 bits (530), Expect = 2.070e-62 Identity = 108/175 (61.71%), Postives = 136/175 (77.71%), Query Frame = 1
Query: 313 MRMMSSHSRRMDQ---GLPESRLQFLGGLAGGVAALALPLAALADPPLERFKEGEVCVERNLNGSCKKFGTSETSAQEMSTVAKNTAISEEPESELMTTLKRRTAENKARNDEEVATKTFANGQAGEFGIFSRYVPVKHMDTGRFELILVSELDQMKKAGLVVNRGGTEYFTDVK 828
+RM S R + G+PESR +FL GL GGV ALALPLAALADPPLE+FK+ EVC++R LNG+C KFG +T +E+++++ EEPESELM TLKRRT ENKA+NDEE+ATKTFANGQ+GEFG FSRYVPVKH DTG+FEL+L+SEL++MK+ GL+V+ + F D K
Sbjct: 32 LRMSSGSPRTPTEQQGGVPESRQKFLSGLFGGVTALALPLAALADPPLEKFKKDEVCLQRGLNGACVKFGVDDT-MEEVASISTKAPAQEEPESELMATLKRRTIENKAKNDEEIATKTFANGQSGEFGPFSRYVPVKHKDTGKFELVLISELEEMKRNGLIVSERLGDVFVDPK 205
BLAST of mRNA_H-paniculata_contig4049.10474.1 vs. uniprot
Match: A0A836CIW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW7_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 3.190e-20 Identity = 53/121 (43.80%), Postives = 80/121 (66.12%), Query Frame = 1
Query: 463 GEVCVERN-LNGSCKKFG-------TSETSAQEMSTVAKNTAISEEPESELMTTLKRRTAENKARNDEEVATKTFANGQAGEFGIFSRYVPVKHMDTGRFELILVSELDQMKKAGLVVNRG 801
G +CV+R+ +NG C+K+ S +S + K T + EEPES+L+ L+++T ENKA+N+ VA KTF N QAGEFG FSRYV VK + G++EL+L+ +LD +K+ G++ + G
Sbjct: 82 GAICVKRSAINGRCEKYSDEVVPLDASASSNRTKVDRVKRTVVQEEPESDLIKRLRQKTVENKAKNEAMVAEKTFMNNQAGEFGPFSRYVLVKRPNDGKYELVLIRDLDDLKRQGIIESSG 202
BLAST of mRNA_H-paniculata_contig4049.10474.1 vs. uniprot
Match: A0A7S2Y4S0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4S0_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 2.740e-10 Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = 1
Query: 466 EVCVERNLNGSCKKFGTSETSAQEMSTV------------AKNTAISE-EPESELMTTLKRRTAENKARNDEEVATKTFANGQAGEFGIFSRYVPVKHMDTGRFELILVSELDQMKKAGLVVNR 798
++C++RN+ G C ++ + ++ ++V AK+ ++E E + +L+ L +++AENK ND VA KTF + G+FG FSRYVPV+H D G +EL+ E ++KK G V R
Sbjct: 84 QICLKRNVIGRCDRWVGDDLPEEKQNSVKDSMKKRTQENEAKSKQLAEKEAKGDLIEELLKKSAENKVENDRLVAEKTFLASEPGQFGPFSRYVPVRHFD-GTYELLTYPEYRKLKKQGKVEGR 206
BLAST of mRNA_H-paniculata_contig4049.10474.1 vs. uniprot
Match: A0A7S4A8G9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8G9_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 7.100e-7 Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 1
Query: 427 ALADPPLERFKEGEVCVERNLNGSCKKFGTS---ETSAQEMSTVAK---------NTAISEEPESELMTTLKRRTAENKARNDEEVATKTFANGQAGEFGIFSRYVPVKHMDTGRFELILVSELDQMKKAGLVVNR 798
AL+D E F E C R G+C T+ +T+A + + A+ + +E ES L+ L+RRTA N +N +V + F N Q+GEFG FSR+VPV D G++ L+L E + +KK V +
Sbjct: 1 ALSDYKTELFVESG-CGRRGPLGACLDARTAAPRDTTAADEAQAARAGXXXXXXXXARMEQELESPLVAELRRRTAANAEKNARQVELQMFQNSQSGEFGPFSRFVPVAKND-GKYVLVLAGEYEDLKKQKKVAKQ 134
BLAST of mRNA_H-paniculata_contig4049.10474.1 vs. uniprot
Match: W7TJZ7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJZ7_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 1.310e-5 Identity = 46/139 (33.09%), Postives = 68/139 (48.92%), Query Frame = 1
Query: 400 VAALALPLAAL---ADPPLERFKEGE---VCVERNLNGSCKKFGTSETSAQEMSTVAKNTAISEEPESELMTTLKRRTAENKARNDEEVATKTFANGQAGEFGIFSRYVPVKHMDTGRFELILVSELDQMKKAGLVVNR 798
+ A+ LP AAL A PP GE V+++LN K T E +L+ TLKRRT +NKA+ND + KTF N +AG +G F +++PV D G++ L+ + + +K G +V R
Sbjct: 52 LVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYT-------------------EDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKD-GQYVLLTEDQYNTLKGEGKIVGR 170
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-01_007380.1 |
| Exons | 6 |
| Model size | 1189 |
| Cds size | 684 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4049.10474.1 >prot_H-paniculata_contig4049.10474.1 ID=prot_H-paniculata_contig4049.10474.1|Name=mRNA_H-paniculata_contig4049.10474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp
MSSRLSLSSLVLSIFHPLTVVVATLSLVHVSMFSPVVVVKGFAMVASTDV
RAGGRMRMMSSHSRRMDQGLPESRLQFLGGLAGGVAALALPLAALADPPL
ERFKEGEVCVERNLNGSCKKFGTSETSAQEMSTVAKNTAISEEPESELMT
TLKRRTAENKARNDEEVATKTFANGQAGEFGIFSRYVPVKHMDTGRFELI
LVSELDQMKKAGLVVNRGGTEYFTDVK* back to topmRNA from alignment at H-paniculata_contig4049:7330..12709- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4049.10474.1 ID=mRNA_H-paniculata_contig4049.10474.1|Name=mRNA_H-paniculata_contig4049.10474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5380bp|location=Sequence derived from alignment at H-paniculata_contig4049:7330..12709- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGTCCAAACCGCATGAACTATGACTGACGGGAACTGTCGGGGGAGAAA
CTGATCGTATGTGACTGTTATTTAAGATGCAGTGTACAGCCTTTGTAGTA
CGATAGCTTTTTGAAATACTTGCACGCGCAACAGACAGGCAGGAACCATG
AGTTCTCGGCTGTCTTTGTCGTCGTTGGTCCTAAGCATTTTTCATCCTCT
TACAGTAGTGGTGGCAACTCTATCTTTGGTACATGTGTCGATGTTTTCAC
CGGTTGTTGTTGTCAAAGGTTTTGCTATGGTAGCAAGCACAGATGTCCGC
GCTGGTGGCAGGATGCGCATGATGAGCTCTCACTCGCGAAGGTATGCGTA
TGTTCCGTGTTTGAGCTGTGAAGAATGGCTGGTGTAGGAATGCATTGCTG
GGAGCTTCGTCCTCGCCATGTATGCTGCTGTTCGGTTTCTAGTTTTGTAT
GCAAATTTACAAGGTTCAACTGGCTGGACCAATTCGTGTGAACCTTCAGC
CTTGTCTACGGTTGGCCCATGTTTTCATATATGCGCCTGAGCCATCTCAA
GATAATTAAACCCTTGCACATGATGCACATGTATTTCCAAATGTCACCAC
CAACAACGTTTCTGGGCTACCTTTGGTTGTGCTTCCATTTACCGGCAAAA
GCACTCCTGTGCACATGACCACTATTTATTCAAAGTCCATCTATGATTTG
TTATGTTTTCGATGGTCGATCTTTTCCAAGTTCAGTTTTCTTATATCTCA
CCTGACAAGGTTCGGGGTAAACTCTAACGATCTTTCGTTTTCTTTGCAGA
ATGGACCAGGGGTTGCCGGAGTCTAGACTGCAATTTCTCGGTGGCTTGGC
TGGAGGTGTAGCTGCCCTAGCGCTACCGCTTGCGGCGTTGGCTGACCCAC
CGTTGGAACGGTTCAAGGAGGGAGAGGTGGGCAGTGAACATGGATATTCC
CAGGGGTGCCCTCGGTAACGGTATTTGAATCTGGCAAAAACGGTACGGTT
TCTCTTTTTCTCGATAATTGTTGTTCGGTATACGGTTTTCGGTTTTCGAG
TTACGCGGTACGCGGTACGGTACTTACGTTCTAGGTACTTGTCCGGTGAA
CGGTATTCGGTTTTTCGACAGCCTGGTTTGTACGGTTTTTCGTTTTCACA
GGAGGTATCGTGCGGTACGGCATTCGGGATTTGGATGCCGAAGGGAAGGA
TGAAGCCACGGTAGGTCGTTCGAAGGCAACACGCCACATTGCTGAAAAAT
ATCGAGTGACAATGAAATCATTATCTACGAGTTACCCGCATGAATGATTG
ATTGGTATGAGGCATTTGATAATCCCCGATGATTTGCATAGTAGTGTGAA
GCGAAGAAAAAACAAAAAAAATGAGTGGAAAAGGCTAACATGTTGATTTA
TTCTGCCCGTGACGGACAAACACGAAAAAAAAAAAGAAACAAAGCGATAA
ATAACAAACAACTAATGACCAACTGCATCCGCCACAACGACATCCAACCA
CCCCATACTTAAAAATATATTCATATTATTAGTACACGTGTCCTGGAACA
ATTCACCAGATCAATTTGGCCATGATCATATTATCAAATTCATATCTGCG
GCATATTTCAAGCACAAGGAGTGTTCGCTGCCGCACGTAGTACAATTAAG
TATTCAACTAATTAAAAAATATGCGACAGCGGCGACTACCTCTACTGCTG
TTTGATCTAGCCCCGCAATGACAAAAAAAACACAAGGCAGAACGCAGAAA
GCAAAGCTCTCCTGACCATAGCAGGATACTAAAGAGTATTGAACGAATCA
ACTCGCAGCATGATATCCGCCATGGAGCTCCCTGCACCCCACTAAACCAT
AATCTCATCCACGCCTCCAGCTGTCGTTGTGGTGGATGCAGGTTTTGTTG
TAACAAGCTTCACGAAATCTCAAATCAAACCCGCGGTTACATGTACGATT
GTTCATACTCGTGGTCAGATTTGCTGTTCTCTACGGTCCTGAGGTTGAAC
GGTAGGCTGCCAGTACGGTACCAGGGAACCACGATACAGAAACGGTGCGG
TACCAGCGTTTCACGGTAACGATATCTAGCTCTGGTAGCGCGGTAAATTC
TGTTTGACGTTACCGTACAAGGTAATGATAACGTGAAAATGTCGATTTTC
ACGGCATCTTACCGAATACCGCATGCCTGGTTTTACCGCGATATTTTTAC
TGCGTAGTTTTACCCAGAGGCCCCCTGGATATTCCAAAGGATTCGTAGGC
TACCTGGTGAAATGCACGGCACGGTGGCGTATACCGAGAGGCGCGGGACT
CCAACATTCTCTGCCCTGTAGCGTGCGTAGAGCGCGGTACCAGAAAACAC
CCAGAGGTAGCGTTGACAGCTTCATGGGCAATTGAAAAAGACAACCCTTC
ATTGGTGTGAACAAGGCGGCATTATGTTGGTTTGTCGTGTTGCTCGCTAT
GTCATAAACAGAGACCACGTACACTGAGATGCTTGTTGTTACTGTATAAA
GACAACGATGACAAGGTACACGTTGCGCTACGCAACACGGAGGTCACATG
GTCCCTTGTTTATCTTACACAGATCCAGACTGTGGGGTACGTTAGACGTG
CGTTGAGCTTTTTGTTTTACGCACGTTACAGAAACCCGAGTACGTTGGAT
GAGCACCGAGCCCCGTCCAGAGGGAAAATATCCCGTGGCCAGGCTGCTGA
TACCATTTTCTTCGTTGCATGTTCATCACATTTATGCTTCTATGTCGTTT
ATCTCCACCAAAACGTAGTTTGTGGTTTGCATCTTGTCTAGTTCTAATAA
AACGATGACCCCTCGCTTTGTCGCTTTCGGCGTCTCTCGGGCAGGTTTGT
GTTGAGAGAAATCTGAATGGATCTTGTAAAAAGTTCGGCACCAGCGAGAC
CTCGGCACAGGAGGTAAAGTGGACATTTGACACTACTATAAGCTCATGGT
CATCGTTTTGTAGACCACAGTATACATCCGCTTTTGAATAGTAGGATGCT
ATCAATCGGTGCAGACGAGAATCGACAGCGGGGATGTCGAGCTTGCGACT
TTTCACGCGCTCGCACTGCTTGCTCTGTAGCTTGGTGTCATGGAGTGTTG
ATTCGGTATATGCAACGGTTGATTTTCAACAATCGAAGACATCTTGTAAG
TAGTATATATTTTTTAGGGTAATGCACAGGAAAGGGCATGCCCTGTGTCG
TTTTGGACAAACGACAAAGGGCCACATTTGACATGTATAGACGCGCTCAA
ATGACTAGAATACTGTTGATTTCGCACTGAAGACCAGCTGGTGCTTCCCT
CCTACACGTCTTTGAAGAAATACTGGAAGAAGATAGGGGAGATTAGGCAT
AGCAATGCAACAAAGTATGGGGTACTCCCAAGGAGGGCCTCCTGTACCCT
AAAATGTCCATAGCTCGCGAGGTATACTCCTTCGATTCTACTCGTGTTGA
GCATCACCTTTCCTGTACGCTTTTTGCAGAAACTTTCCACTTGTGTACCC
TTTCCCGCCCACTGTTGTACCCTGTAATGGCAACTGTCAAAGTTGCCCGA
TAGACATATATATTGTGGTCGTTAGCAGCGACTTCGTTGTTAACGCTAGC
GACCTATCGCATGTACGCTAGACATGGCGAATATGTTTGGGGGGGGTACA
TAGGATCATCATCCAACACCAAGTCCTCGCCCACCACCCTCACCGGCACC
ATTACTTACATCCACTCCCACTACCCGGCACATTGCAGTGCATAACATTG
TAGTCGTGAAGCTACAAGATAGCACAGTCACATAGTCGATATGTTGCGCC
AACTGCAAGCCAGTCGCAGTTTGCTGCTGACGATGGCAGTAGGTAACGCA
CAGCCTCGTCTAGCCTGTAGTGACGTGTTTCCCAGGCGAGGGAACTTGGG
GTAGCCATCGCACAAACGTTCAAGCAGGACAGCCTATCTTTTTCTTGTGT
AGTGACAATTTCCGCCGTCTGCAGATGTTGGATGTGGCCATGTGCAACTG
TATCCAGAACTATCTAATATAGACAGAGTGTACATTTTCCTGTCCGCTGC
TCTCTTCTTAACTCTTCCCCATGTTGTGTATGTCCATTTTGTCGACCTCG
AAATACCTTCCCCAACGTTTTGCAATGCTCGAAGATGTCAACAGTCGCGA
AGAATACCGCGATATCGGAGGAACCTGAAAGCGAGTTGATGACCACGCTC
AAGAGGAGGTAAACCACTCTAGCATTACACTACAAGCAGGGTAATATACT
GCTGTTGTTCGACGTCGTCGTTGCAGTTCATAGCAGTCAAAATAATATCA
GGTGCTGGTTATTCTGCACGTCTCCTCCACTTATCTTGTACCGGGCCTCG
TCGCCCCAAAGGCATCAATGCTGCGGTCATCGCTACAGTTGTTGTTGCTG
CTGCCACGGAACTGGAGGGCGATGTGACTTTTGGAATTCAATAGATTAGC
TTGGCGTTTTGTTTACGAAAATGTCGCTTGTGCCCTCGTCGCTCAGAACT
GCGGAAAATAAGGCTAGAAACGACGAGGAAGTAGCCACCAAGACCTTCGC
TAACGGACAAGCGGGGGAGTTCGGAATCTTCAGCCGGTAAGTGCTGTTTT
TGTCGAAGGACTCGAGGAGCACTTGCGCCTAATCGATCGGCCTTGGTGAT
CTAGCAGAGAGGCTGCGTGGTTTTATCTTACTGTGTAGTGTGATGCGAAG
CCGAAGTCATCAGATATAATGCAGCATCTGGCTGGAGCTGAACGTGGTAT
ATCCCCCCCCCCCCGCCCCTCCCTGCCCCGTTATCGCTGCCTGCTCCTCT
GCCGGTCGTTTGCGCGCTGCGGTGTCGATTGTGGTGTCCGTTTTCCTCTG
GCGCTCGGTTTTTCTAAATCCAATAACATGCCGCGAAATAAGATATGTCC
CTGTAAAGCACATGGACACGGGTAGATTCGAGTTAATTCTTGTCTCAGAA
CTGGACCAGATGAAGAAAGCGGGTTTGGTCGTCAACAGAGGCGGCACAGA
ATACTTCACGGACGTGAAATAACCAGGCGGAAACAAAAGGAGGGGTGATC
TGGAGCAGTTTGTTTTTCTGTTACAGAGAACGAACTGAGGAGTGCGTGGT
GTATGGTCCACGACACCAGCAGATATTAAGGGGTGTTCAGCTGTCACCGA
TTCCGGGGGTAGGACGTAAGTGGCGAGGGACGCGCGAAAACGGTGCTGGG
ATGTATCTACAGACTAAGAGCTGGCATTAACATGCGCGATAGACGTGTGA
ATCATACCCGCTTGAGAAGGTTTACCGAATTGGGGCGTCGTGGTGTTGGA
ACTTGCAATCGTCATCGCACGCTTTTTTTACGATAATATACGCGAACATA
GTTTAAAAGAAAACGCGAACACCTCCAGTC back to topCoding sequence (CDS) from alignment at H-paniculata_contig4049:7330..12709- >mRNA_H-paniculata_contig4049.10474.1 ID=mRNA_H-paniculata_contig4049.10474.1|Name=mRNA_H-paniculata_contig4049.10474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig4049:7330..12709- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTTCTCGGCTGTCTTTGTCGTCGTTGGTCCTAAGCATTTTTCATCC
TCTTACAGTAGTGGTGGCAACTCTATCTTTGGTACATGTGTCGATGTTTT
CACCGGTTGTTGTTGTCAAAGGTTTTGCTATGGTAGCAAGCACAGATGTC
CGCGCTGGTGGCAGGATGCGCATGATGAGCTCTCACTCGCGAAGATGAGT
TCTCGGCTGTCTTTGTCGTCGTTGGTCCTAAGCATTTTTCATCCTCTTAC
AGTAGTGGTGGCAACTCTATCTTTGGTACATGTGTCGATGTTTTCACCGG
TTGTTGTTGTCAAAGGTTTTGCTATGGTAGCAAGCACAGATGTCCGCGCT
GGTGGCAGGATGCGCATGATGAGCTCTCACTCGCGAAGAATGGACCAGGG
GTTGCCGGAGTCTAGACTGCAATTTCTCGGTGGCTTGGCTGGAGGTGTAG
CTGCCCTAGCGCTACCGCTTGCGGCGTTGGCTGACCCACCGTTGGAACGG
TTCAAGGAGGGAGAGAATGGACCAGGGGTTGCCGGAGTCTAGACTGCAAT
TTCTCGGTGGCTTGGCTGGAGGTGTAGCTGCCCTAGCGCTACCGCTTGCG
GCGTTGGCTGACCCACCGTTGGAACGGTTCAAGGAGGGAGAGGTTTGTGT
TGAGAGAAATCTGAATGGATCTTGTAAAAAGTTCGGCACCAGCGAGACCT
CGGCACAGGAGGTTTGTGTTGAGAGAAATCTGAATGGATCTTGTAAAAAG
TTCGGCACCAGCGAGACCTCGGCACAGGAGATGTCAACAGTCGCGAAGAA
TACCGCGATATCGGAGGAACCTGAAAGCGAGTTGATGACCACGCTCAAGA
GGAGATGTCAACAGTCGCGAAGAATACCGCGATATCGGAGGAACCTGAAA
GCGAGTTGATGACCACGCTCAAGAGGAGAACTGCGGAAAATAAGGCTAGA
AACGACGAGGAAGTAGCCACCAAGACCTTCGCTAACGGACAAGCGGGGGA
GTTCGGAATCTTCAGCCGAACTGCGGAAAATAAGGCTAGAAACGACGAGG
AAGTAGCCACCAAGACCTTCGCTAACGGACAAGCGGGGGAGTTCGGAATC
TTCAGCCGATATGTCCCTGTAAAGCACATGGACACGGGTAGATTCGAGTT
AATTCTTGTCTCAGAACTGGACCAGATGAAGAAAGCGGGTTTGGTCGTCA
ACAGAGGCGGCACAGAATACTTCACGGACGTGAAATAAATATGTCCCTGT
AAAGCACATGGACACGGGTAGATTCGAGTTAATTCTTGTCTCAGAACTGG
ACCAGATGAAGAAAGCGGGTTTGGTCGTCAACAGAGGCGGCACAGAATAC
TTCACGGACGTGAAATAA back to top
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