mRNA_H-paniculata_contig4046.10468.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4046.10468.1
Unique NamemRNA_H-paniculata_contig4046.10468.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.780e-19
Identity = 50/131 (38.17%), Postives = 79/131 (60.31%), Query Frame = 2
Query:   32 SEAE*GHVWAQAGGRMWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPAS 415
            ++AE      +  GR W     + LV+     Q K+DPC+FR     VV MI+ ++VDD++V+G   +CE L A+L  +F T   GE +W+ GCA   D+  G ++I+Q  +ID+++KRF V++ S +PAS
Sbjct:  609 AKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPAS 738          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.450e-19
Identity = 50/131 (38.17%), Postives = 78/131 (59.54%), Query Frame = 2
Query:   32 SEAE*GHVWAQAGGRMWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPAS 415
            ++AE      +  GR W     + LV+     Q K+DPC+FR     VV MI+ ++VDD++V+G   +CE L A+L  +F T    E +W+ GCA   D+  G +RI+Q  +ID+++KRF V++ S +PAS
Sbjct:  433 AKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPAS 562          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JSU5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.070e-18
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 2
Query:   59 AQAGGRMWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPAS 415
            A  G R W     E LV+     Q ++DPC+FR     VV MIL ++VDD++V+G   +CE L  +L+ E    + GE +W+ GCA   D+  G +RI+Q  +ID+++KRF V++ S +PAS
Sbjct:  373 APEGHRPWGYHAAETLVEN-GFEQCEADPCIFRKMVDEVVVMILVIYVDDILVAGSDEDCEELLPSLQQEISHQKLGECEWFDGCATERDVEAGTLRISQTAYIDSMVKRFDVQSTSRIPAS 493          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.650e-16
Identity = 45/120 (37.50%), Postives = 72/120 (60.00%), Query Frame = 2
Query:   74 RMWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPASQQA 424
            R W     + LV+     + K+D C+FR     VV MI+ ++ DD++V+G   +CE L A+L  +F T   GE +W+ GCA   D+  G +RI+Q  +ID+++KRF V++ S +PA+  A
Sbjct:  779 RQWGYLAADTLVEN-GFEECKADRCVFRKMVDEVVVMIIVIYADDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMLKRFDVQSTSRIPATPGA 897          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5K123_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K123_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.410e-9
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  173 VVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRI--TQFIDTVIKRFGVETESDLPAS 415
            VV MI+ ++VD ++V G   +C+ L A+L  +F T   GE +W+  CA   D+  G + I  T +ID+++KRF V++ S +PAS
Sbjct:    5 VVVMIIVIYVDIILVDGSDEDCKELLASLNKKFPTKNLGECEWFDRCAIDRDVEAGTLNISETAYIDSMVKRFDVQSTSRIPAS 88          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5KV13_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV13_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.050e-8
Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  200 VDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRI--TQFIDTVIKRFGVETESDLPASQQA 424
            VDD++V+G   +CE L A+L  +F     GE +W+ GCA   D+  G ++I  T +ID+++KRF V++ S +PA+  A
Sbjct: 1089 VDDILVAGSDEDCEELLASLNEKFLNNNLGECQWFDGCAIERDVEAGTLKISRTAYIDSMVKRFDVQSTSRIPATPGA 1166          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JQU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 8.770e-8
Identity = 40/118 (33.90%), Postives = 60/118 (50.85%), Query Frame = 2
Query:   71 GRMWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPAS 415
            GR W     + LV+     Q K+DP +FR              VD+V+          L A+L  +F T   GE +W+ GCA   D+  G +RI+Q  +ID+++KRF V++ S +PAS
Sbjct:  587 GRRWGSHAADTLVEN-GFEQCKADPWVFRK------------MVDEVV---------ELLASLHKKFPTKNLGEFEWFDGCAIERDVEAGTLRISQTAYIDSMVKRFDVQSTSRIPAS 682          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A251TG75_HELAN (Putative reverse transcriptase, RNA-dependent DNA polymerase, Gag-polypeptide of LTR copia-type n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TG75_HELAN)

HSP 1 Score: 52.8 bits (125), Expect = 3.130e-5
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 2
Query:   74 RMWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSV-ECESLFAALRAEFQTTR-GELKWYLG 307
            R W++RL  VLVD     QSK D  M+ L K+ V  +IL V+VDD++V+G SV E   +   L + FQ    G+LK++LG
Sbjct:  674 RKWNERLNSVLVD-YGFVQSKCDHSMYVLAKQKVF-VILLVYVDDIVVTGNSVDEVSKIKGILNSNFQIKDLGKLKYFLG 751          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JBN2_9PHAE1.780e-1938.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE4.450e-1938.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSU5_9PHAE2.070e-1840.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJY0_9PHAE1.650e-1637.50CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5K123_9PHAE2.410e-939.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV13_9PHAE1.050e-839.74CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQU4_9PHAE8.770e-833.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A251TG75_HELAN3.130e-543.75Putative reverse transcriptase, RNA-dependent DNA ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4046contigH-paniculata_contig4046:843..1266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size425
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930238.2328095-UTR-H-paniculata_contig4046:842..9181622930238.2328095-UTR-H-paniculata_contig4046:842..918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4046 843..918 +
1691481204.7496152-UTR-H-paniculata_contig4046:842..9181691481204.7496152-UTR-H-paniculata_contig4046:842..918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4046 843..918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930238.2463872-CDS-H-paniculata_contig4046:918..12661622930238.2463872-CDS-H-paniculata_contig4046:918..1266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4046 919..1266 +
1691481204.7646587-CDS-H-paniculata_contig4046:918..12661691481204.7646587-CDS-H-paniculata_contig4046:918..1266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4046 919..1266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4046.10468.1prot_H-paniculata_contig4046.10468.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4046 919..1266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4046.10468.1

>prot_H-paniculata_contig4046.10468.1 ID=prot_H-paniculata_contig4046.10468.1|Name=mRNA_H-paniculata_contig4046.10468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGK
SVECESLFAALRAEFQTTRGELKWYLGCAFWHDMVRGVVRITQFIDTVIK
RFGVETESDLPASQQA
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mRNA from alignment at H-paniculata_contig4046:843..1266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4046.10468.1 ID=mRNA_H-paniculata_contig4046.10468.1|Name=mRNA_H-paniculata_contig4046.10468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=424bp|location=Sequence derived from alignment at H-paniculata_contig4046:843..1266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAGGGTTGCGGGGACAAAAGCGGTACAATAGTGAGGCTGAATAAGGCC ATGTATGGGCTCAAGCAGGCGGACGGATGTGGTCAAAGCGCCTCGTAGAA GTACTCGTGGATAAAGTCGACATGGCGCAATCCAAGTCTGACCCTTGCAT GTTCAGGCTGGGGAAACGTGGCGTGGTAGATATGATTCTGTGTGTTCATG TAGATGATGTGATTGTTTCTGGTAAGAGTGTGGAGTGTGAATCCCTGTTT GCAGCGTTAAGGGCGGAGTTCCAAACCACGAGAGGCGAGCTCAAGTGGTA CCTAGGTTGCGCATTTTGGCATGACATGGTGAGGGGAGTTGTCCGCATCA CGCAATTCATTGATACTGTCATTAAACGTTTTGGCGTGGAAACCGAGTCT GACCTTCCTGCGTCTCAGCAGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig4046:843..1266+

>mRNA_H-paniculata_contig4046.10468.1 ID=mRNA_H-paniculata_contig4046.10468.1|Name=mRNA_H-paniculata_contig4046.10468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig4046:843..1266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTCAAAGCGCCTCGTAGAAGTACTCGTGGATAAAGTCGACATGGC
GCAATCCAAGTCTGACCCTTGCATGTTCAGGCTGGGGAAACGTGGCGTGG
TAGATATGATTCTGTGTGTTCATGTAGATGATGTGATTGTTTCTGGTAAG
AGTGTGGAGTGTGAATCCCTGTTTGCAGCGTTAAGGGCGGAGTTCCAAAC
CACGAGAGGCGAGCTCAAGTGGTACCTAGGTTGCGCATTTTGGCATGACA
TGGTGAGGGGAGTTGTCCGCATCACGCAATTCATTGATACTGTCATTAAA
CGTTTTGGCGTGGAAACCGAGTCTGACCTTCCTGCGTCTCAGCAGGCAAT
GTGGTCAAAGCGCCTCGTAGAAGTACTCGTGGATAAAGTCGACATGGCGC
AATCCAAGTCTGACCCTTGCATGTTCAGGCTGGGGAAACGTGGCGTGGTA
GATATGATTCTGTGTGTTCATGTAGATGATGTGATTGTTTCTGGTAAGAG
TGTGGAGTGTGAATCCCTGTTTGCAGCGTTAAGGGCGGAGTTCCAAACCA
CGAGAGGCGAGCTCAAGTGGTACCTAGGTTGCGCATTTTGGCATGACATG
GTGAGGGGAGTTGTCCGCATCACGCAATTCATTGATACTGTCATTAAACG
TTTTGGCGTGGAAACCGAGTCTGACCTTCCTGCGTCTCAGCAGGCA
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