prot_H-paniculata_contig4046.10468.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4046.10468.1
Unique Nameprot_H-paniculata_contig4046.10468.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length116
Homology
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5L663_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L663_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 6.480e-19
Identity = 46/115 (40.00%), Postives = 70/115 (60.87%), Query Frame = 0
Query:    2 WSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPAS 113
            W     + LV+       K+DPC+FR    GVV MI+ ++VDD++V+G   +CE L A+L  +F T   GE +W+ GCA   D   G +RI+   +ID+++KRF V++ S +PAS
Sbjct:   31 WGYHAADTLVEN-GFEPCKADPCVFRKMVDGVVVMIVVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDFEAGTLRISHAAYIDSMVKRFDVQSASRIPAS 144          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.990e-18
Identity = 46/115 (40.00%), Postives = 72/115 (62.61%), Query Frame = 0
Query:    2 WSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPAS 113
            W     + LV+     Q K+DPC+FR     VV MI+ ++VDD++V+G   +CE L A+L  +F T   GE +W+ GCA   D+  G ++I+Q  +ID+++KRF V++ S +PAS
Sbjct:  625 WGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPAS 738          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 7.520e-18
Identity = 46/115 (40.00%), Postives = 71/115 (61.74%), Query Frame = 0
Query:    2 WSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPAS 113
            W     + LV+     Q K+DPC+FR     VV MI+ ++VDD++V+G   +CE L A+L  +F T    E +W+ GCA   D+  G +RI+Q  +ID+++KRF V++ S +PAS
Sbjct:  449 WGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPAS 562          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JSU5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.390e-17
Identity = 46/115 (40.00%), Postives = 71/115 (61.74%), Query Frame = 0
Query:    2 WSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPAS 113
            W     E LV+     Q ++DPC+FR     VV MIL ++VDD++V+G   +CE L  +L+ E    + GE +W+ GCA   D+  G +RI+Q  +ID+++KRF V++ S +PAS
Sbjct:  380 WGYHAAETLVEN-GFEQCEADPCIFRKMVDEVVVMILVIYVDDILVAGSDEDCEELLPSLQQEISHQKLGECEWFDGCATERDVEAGTLRISQTAYIDSMVKRFDVQSTSRIPAS 493          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.200e-16
Identity = 44/118 (37.29%), Postives = 71/118 (60.17%), Query Frame = 0
Query:    2 WSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPASQQA 116
            W     + LV+     + K+D C+FR     VV MI+ ++ DD++V+G   +CE L A+L  +F T   GE +W+ GCA   D+  G +RI+Q  +ID+++KRF V++ S +PA+  A
Sbjct:  781 WGYLAADTLVEN-GFEECKADRCVFRKMVDEVVVMIIVIYADDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMLKRFDVQSTSRIPATPGA 897          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.320e-14
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 0
Query:    2 WSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQF--IDTVIKRFGVETESDLPAS 113
            W   + + LV+     Q K+DPC+F      VV +I+ ++VDD++V+G   +CE L A+L  +F T   GE +W  GCA   D+  G   I+Q   ID+++KRF V++   +PAS
Sbjct:  491 WGYHVADTLVEN-GFEQCKADPCVFCKMVNEVVVLIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGEREWSDGCAIERDVQAGTFHISQTANIDSMMKRFDVQSTFRIPAS 604          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5KYH9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.010e-10
Identity = 41/115 (35.65%), Postives = 61/115 (53.04%), Query Frame = 0
Query:    2 WSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPAS 113
            W     + LV+     Q K+DPC+FR              VD+V      V+CE L A+L  EF T   GE +W+ GCA   D+  G + I+Q  ++D+++KRF V++ S +PAS
Sbjct:  626 WGYHAADTLVEN-GFEQCKADPCVFRK------------MVDEV------VDCEELLASLNKEFPTKNLGECEWFDGCAIERDVAAGTLTISQTAYVDSMVKRFDVQSASRIPAS 721          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5K123_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K123_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.120e-9
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = 0
Query:   33 VVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRI--TQFIDTVIKRFGVETESDLPAS 113
            VV MI+ ++VD ++V G   +C+ L A+L  +F T   GE +W+  CA   D+  G + I  T +ID+++KRF V++ S +PAS
Sbjct:    5 VVVMIIVIYVDIILVDGSDEDCKELLASLNKKFPTKNLGECEWFDRCAIDRDVEAGTLNISETAYIDSMVKRFDVQSTSRIPAS 88          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5KV13_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV13_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 4.600e-9
Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 0
Query:   42 VDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRI--TQFIDTVIKRFGVETESDLPASQQA 116
            VDD++V+G   +CE L A+L  +F     GE +W+ GCA   D+  G ++I  T +ID+++KRF V++ S +PA+  A
Sbjct: 1089 VDDILVAGSDEDCEELLASLNEKFLNNNLGECQWFDGCAIERDVEAGTLKISRTAYIDSMVKRFDVQSTSRIPATPGA 1166          
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JQU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU4_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 8.800e-7
Identity = 38/115 (33.04%), Postives = 58/115 (50.43%), Query Frame = 0
Query:    2 WSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPAS 113
            W     + LV+     Q K+DP +FR              VD+V+          L A+L  +F T   GE +W+ GCA   D+  G +RI+Q  +ID+++KRF V++ S +PAS
Sbjct:  590 WGSHAADTLVEN-GFEQCKADPWVFRK------------MVDEVV---------ELLASLHKKFPTKNLGEFEWFDGCAIERDVEAGTLRISQTAYIDSMVKRFDVQSTSRIPAS 682          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5L663_9PHAE6.480e-1940.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBN2_9PHAE2.990e-1840.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE7.520e-1840.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSU5_9PHAE1.390e-1740.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJY0_9PHAE3.200e-1637.29CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JSK5_9PHAE1.320e-1437.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KYH9_9PHAE2.010e-1035.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K123_9PHAE1.120e-939.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV13_9PHAE4.600e-939.74CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQU4_9PHAE8.800e-733.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4046contigH-paniculata_contig4046:919..1266 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4046.10468.1mRNA_H-paniculata_contig4046.10468.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4046 843..1266 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4046.10468.1 ID=prot_H-paniculata_contig4046.10468.1|Name=mRNA_H-paniculata_contig4046.10468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGK
SVECESLFAALRAEFQTTRGELKWYLGCAFWHDMVRGVVRITQFIDTVIK
RFGVETESDLPASQQA
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