mRNA_H-paniculata_contig4046.10467.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4046.10467.1
Unique NamemRNA_H-paniculata_contig4046.10467.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4046.10467.1 vs. uniprot
Match: A0A2S4WDX2_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Puccinia striiformis TaxID=27350 RepID=A0A2S4WDX2_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 4.130e-8
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    4 KAVRVEFEGLESLKPWNRVDNVRKGSNVVSARWLFAWKIGEQWIVIKPKARLVARGFNQ 180
            KA  +E   LE L+ W  V+  RKG  V+ ARW+FA K     ++++ KAR VARGFNQ
Sbjct:  540 KAAELELNQLEKLEVWEVVE-ARKGIKVIGARWVFALKRDSTGVIVRFKARYVARGFNQ 597
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BLAST of mRNA_H-paniculata_contig4046.10467.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.330e-6
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    7 AVRVEFEGLESLKPWNRVDNVRKGSNVVSARWLFAWKIGEQWIVIKPKARLVARGFNQ 180
            A R EF GL ++  +      ++G+NV+SA+W+++WK  E    ++ KARLVARGF Q
Sbjct: 1501 AERKEFFGLNAVGTFEE----QRGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQ 1554
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BLAST of mRNA_H-paniculata_contig4046.10467.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.330e-6
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    7 AVRVEFEGLESLKPWNRVDNVRKGSNVVSARWLFAWKIGEQWIVIKPKARLVARGFNQ 180
            A R EF GL ++  +      ++G+NV+SA+W+++WK  E    ++ KARLVARGF Q
Sbjct: 1387 AERKEFFGLNAVGTFEE----QRGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQ 1440
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BLAST of mRNA_H-paniculata_contig4046.10467.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 6.230e-6
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    7 AVRVEFEGLESLKPWNRVDNVRKGSNVVSARWLFAWKIGEQWIVIKPKARLVARGFNQ 180
            A R EF GL ++  +       +G+NV+SA+W+++WK  E    ++ KARLVARGF Q
Sbjct: 1269 AERKEFFGLNAVGTFEE-----RGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQ 1321
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BLAST of mRNA_H-paniculata_contig4046.10467.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 5.480e-5
Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   73 KGSNVVSARWLFAWKIGEQWIVIKPKARLVARGFNQ 180
            +G+NV+SA+W+F+WK  E    ++ KARLVARGF Q
Sbjct:  144 RGTNVISAKWVFSWKRDEFGYAVRAKARLVARGFAQ 179
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BLAST of mRNA_H-paniculata_contig4046.10467.1 vs. uniprot
Match: UPI001A3EB21B (uncharacterized protein n=1 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A3EB21B)

HSP 1 Score: 47.8 bits (112), Expect = 6.290e-5
Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    4 KAVRVEFEGLESLKPWNRVDNVRKGSNVVSARWLFAWKIGEQWIVIKPKARLVARGFNQ 180
            +A+  E +GL+++  W  VD + KG + ++  W+   K     I++K KARLVARGF Q
Sbjct:  110 EAMHKELDGLKAMDTWEIVD-LPKGMHAINTHWVLKIKTDANLILMKFKARLVARGFTQ 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4046.10467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2S4WDX2_9BASI4.130e-847.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JVD9_9PHAE3.330e-643.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAC2_9PHAE3.330e-643.10Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KBJ6_9PHAE6.230e-643.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK9_9PHAE5.480e-555.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001A3EB21B6.290e-538.98uncharacterized protein n=1 Tax=Ustilago hordei Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4046contigH-paniculata_contig4046:497..677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size182
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930238.1942105-CDS-H-paniculata_contig4046:496..6761622930238.1942105-CDS-H-paniculata_contig4046:496..676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4046 497..676 +
1691481204.7339184-CDS-H-paniculata_contig4046:496..6761691481204.7339184-CDS-H-paniculata_contig4046:496..676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4046 497..676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4046.10467.1prot_H-paniculata_contig4046.10467.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4046 497..676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4046.10467.1

>prot_H-paniculata_contig4046.10467.1 ID=prot_H-paniculata_contig4046.10467.1|Name=mRNA_H-paniculata_contig4046.10467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
NKAVRVEFEGLESLKPWNRVDNVRKGSNVVSARWLFAWKIGEQWIVIKPK
ARLVARGFNQ
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mRNA from alignment at H-paniculata_contig4046:497..677+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4046.10467.1 ID=mRNA_H-paniculata_contig4046.10467.1|Name=mRNA_H-paniculata_contig4046.10467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=181bp|location=Sequence derived from alignment at H-paniculata_contig4046:497..677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATAAGGCAGTCAGAGTAGAGTTTGAGGGCTTGGAGAGCCTCAAACCTTG
GAATCGTGTTGACAATGTGCGAAAGGGTTCCAATGTGGTCAGTGCTAGGT
GGTTATTTGCATGGAAAATTGGTGAGCAGTGGATTGTGATAAAGCCAAAG
GCAAGGCTCGTAGCTCGAGGATTTAACCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig4046:497..677+

>mRNA_H-paniculata_contig4046.10467.1 ID=mRNA_H-paniculata_contig4046.10467.1|Name=mRNA_H-paniculata_contig4046.10467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig4046:497..677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATAAGGCAGTCAGAGTAGAGTTTGAGGGCTTGGAGAGCCTCAAACCTTG
GAATCGTGTTGACAATGTGCGAAAGGGTTCCAATGTGGTCAGTGCTAGGT
GGTTATTTGCATGGAAAATTGGTGAGCAGTGGATTGTGATAAAGCCAAAG
GCAAGGCTCGTAGCTCGAGGATTTAACCAGAATAAGGCAGTCAGAGTAGA
GTTTGAGGGCTTGGAGAGCCTCAAACCTTGGAATCGTGTTGACAATGTGC
GAAAGGGTTCCAATGTGGTCAGTGCTAGGTGGTTATTTGCATGGAAAATT
GGTGAGCAGTGGATTGTGATAAAGCCAAAGGCAAGGCTCGTAGCTCGAGG
ATTTAACCAG
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