mRNA_H-paniculata_contig40451.10466.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40451.10466.1
Unique NamemRNA_H-paniculata_contig40451.10466.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40451.10466.1 vs. uniprot
Match: A0A6G0WAU5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAU5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.760e-8
Identity = 28/80 (35.00%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:   58 WICDSGATGHATPSAANMSSYWQVKETLRIASGQVIPIVGRGNLSMTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVTD 297
            WI DSGA+ H    AA        + T+R A+G  +PI G G++ +   T    +P+++ ++     LHYN FSL +V+D
Sbjct:   22 WILDSGASDHFRNDAAWFEELQPFEGTVRAANGSDMPIAGTGSVLLEMNTPTSIIPVTLQDLLFISNLHYNRFSLSRVSD 101
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BLAST of mRNA_H-paniculata_contig40451.10466.1 vs. uniprot
Match: A0A485L7G2_9STRA (Aste57867_16617 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7G2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.340e-7
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:   49 EESWICDSGATGHATPSAANMSSYWQVKETLRIASGQVIPIVGRGNLSMTFRTSNGNVPLSVL--NVA-----HAPELHYNLFSL 282
            ++ WI DSGAT   TP+    S Y   K++LR+A G+++ ++G G L + F  S  + P  V   NV      H P+L +NL S+
Sbjct:  362 KDHWIIDSGATASTTPTRTFFSKYVPCKQSLRVADGKMLAVIGYGELCLRFNLSEPDPPAQVRKGNVLFTFGLHCPDLKFNLLSV 446
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BLAST of mRNA_H-paniculata_contig40451.10466.1 vs. uniprot
Match: A0A445M2Q0_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445M2Q0_GLYSO)

HSP 1 Score: 53.1 bits (126), Expect = 6.040e-6
Identity = 32/83 (38.55%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   52 ESWICDSGATGHATPSAANMSSYWQVK-ETLRIASGQVIPIVGRGNLSMTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVTD 297
            +SWI DSGA+ H TPS   +S+Y   +   + +A G+ + IVGRG++++  +TS+G++  ++ NV H P L  NL S+ ++ D
Sbjct:  265 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI--KTSSGSL-WTLHNVRHIPALKRNLISIGQLDD 344
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BLAST of mRNA_H-paniculata_contig40451.10466.1 vs. uniprot
Match: A0A445M280_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445M280_GLYSO)

HSP 1 Score: 53.1 bits (126), Expect = 6.120e-6
Identity = 32/83 (38.55%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   52 ESWICDSGATGHATPSAANMSSYWQVK-ETLRIASGQVIPIVGRGNLSMTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVTD 297
            +SWI DSGA+ H TPS   +S+Y   +   + +A G+ + IVGRG++++  +TS+G++  ++ NV H P L  NL S+ ++ D
Sbjct: 1161 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI--KTSSGSL-WTLHNVRHIPALKRNLISIGQLDD 1240
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BLAST of mRNA_H-paniculata_contig40451.10466.1 vs. uniprot
Match: A0A151QVU7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QVU7_CAJCA)

HSP 1 Score: 51.6 bits (122), Expect = 1.970e-5
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   52 ESWICDSGATGHATPSAANMSSYWQVK-ETLRIASGQVIPIVGRGNLSMTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVTD 297
            ESWI DSGA+ H TPS   +++Y   +   + +A G+ + IVG+G++++  RTS+G+   ++ NV H P L  NL S+ ++ D
Sbjct:  288 ESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAI--RTSSGS-HWTLKNVRHIPALKRNLISVGQLDD 367
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BLAST of mRNA_H-paniculata_contig40451.10466.1 vs. uniprot
Match: A0A151TNK0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TNK0_CAJCA)

HSP 1 Score: 51.6 bits (122), Expect = 2.100e-5
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   52 ESWICDSGATGHATPSAANMSSYWQVK-ETLRIASGQVIPIVGRGNLSMTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVTD 297
            ESWI DSGA+ H TPS   +++Y   +   + +A G+ + IVG+G++++  RTS+G+   ++ NV H P L  NL S+ ++ D
Sbjct:  266 ESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAI--RTSSGS-HWTLKNVRHIPALKRNLISVGQLDD 345
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40451.10466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6G0WAU5_9STRA5.760e-835.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L7G2_9STRA1.340e-736.47Aste57867_16617 protein n=1 Tax=Aphanomyces stella... [more]
A0A445M2Q0_GLYSO6.040e-638.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A445M280_GLYSO6.120e-638.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A151QVU7_CAJCA1.970e-538.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A151TNK0_CAJCA2.100e-538.55Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40451contigH-paniculata_contig40451:13..309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score71.2
Seed ortholog evalue3e-10
Seed eggNOG ortholog161934.XP_010672823.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37Z1Z@33090,3GN55@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930238.1362529-CDS-H-paniculata_contig40451:12..3091622930238.1362529-CDS-H-paniculata_contig40451:12..309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40451 13..309 -
1691481204.71906-CDS-H-paniculata_contig40451:12..3091691481204.71906-CDS-H-paniculata_contig40451:12..309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40451 13..309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40451.10466.1prot_H-paniculata_contig40451.10466.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40451 13..309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40451.10466.1

>prot_H-paniculata_contig40451.10466.1 ID=prot_H-paniculata_contig40451.10466.1|Name=mRNA_H-paniculata_contig40451.10466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MFIDVGKSGELGVRVEEESWICDSGATGHATPSAANMSSYWQVKETLRIA
SGQVIPIVGRGNLSMTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVTD
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mRNA from alignment at H-paniculata_contig40451:13..309-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40451.10466.1 ID=mRNA_H-paniculata_contig40451.10466.1|Name=mRNA_H-paniculata_contig40451.10466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at H-paniculata_contig40451:13..309- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTATAGATGTGGGGAAGTCGGGAGAGCTTGGCGTTAGAGTAGAGGA
AGAGTCGTGGATTTGTGATAGTGGGGCCACAGGTCATGCAACACCATCTG
CGGCTAACATGTCTAGCTATTGGCAAGTCAAAGAGACGCTGCGGATTGCG
TCAGGACAAGTGATCCCGATTGTTGGTCGGGGAAACCTGAGCATGACATT
TAGGACGAGTAATGGAAATGTGCCTCTCTCGGTTCTGAATGTCGCACATG
CCCCTGAACTGCACTACAATTTATTTTCGCTGAGGAAAGTGACCGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig40451:13..309-

>mRNA_H-paniculata_contig40451.10466.1 ID=mRNA_H-paniculata_contig40451.10466.1|Name=mRNA_H-paniculata_contig40451.10466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig40451:13..309- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTATAGATGTGGGGAAGTCGGGAGAGCTTGGCGTTAGAGTAGAGGA
AGAGTCGTGGATTTGTGATAGTGGGGCCACAGGTCATGCAACACCATCTG
CGGCTAACATGTCTAGCTATTGGCAAGTCAAAGAGACGCTGCGGATTGCG
TCAGGACAAGTGATCCCGATTGTTGGTCGGGGAAACCTGAGCATGACATT
TAGGACGAGTAATGGAAATGTGCCTCTCTCGGTTCTGAATGTCGCACATG
CCCCTGAACTGCACTACAATTTATTTTCGCTGAGGAAAGTGACCGATATG
TTTATAGATGTGGGGAAGTCGGGAGAGCTTGGCGTTAGAGTAGAGGAAGA
GTCGTGGATTTGTGATAGTGGGGCCACAGGTCATGCAACACCATCTGCGG
CTAACATGTCTAGCTATTGGCAAGTCAAAGAGACGCTGCGGATTGCGTCA
GGACAAGTGATCCCGATTGTTGGTCGGGGAAACCTGAGCATGACATTTAG
GACGAGTAATGGAAATGTGCCTCTCTCGGTTCTGAATGTCGCACATGCCC
CTGAACTGCACTACAATTTATTTTCGCTGAGGAAAGTGACCGAT
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