|
|
Homology
BLAST of mRNA_H-paniculata_contig4045.10465.1 vs. uniprot
Match: D7G7A4_ECTSI (Similar to chromodomain helicase DNA binding protein 4 isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A4_ECTSI) HSP 1 Score: 191 bits (484), Expect = 8.690e-52 Identity = 135/243 (55.56%), Postives = 150/243 (61.73%), Query Frame = 1
Query: 1 EQLNLVIKYGAEDLFREELEVEEEDDQDLQNDADKPGGEAEKQTQAEKWGDGSHRGRKVSQWTDDAVDQLLDRSALPEDVDGATT-MGGEGKGXXXXXXXXTNPNALGSLLQTFKVASFAQVEAPAEGA-------GGXXXXXXXXXXXXXXXXXEDSDQSRSKSAVEADGSTSPTEEENDGGAVGGDGSADDGLLPSGTPLFGDRPQDSGADWEKILGKSYTKHQKKQQARLGRGKREKTQV 705
EQLNLVIKYGAEDLFREE + E E + EKQT+AEKWGDGSHRGRKVSQWTD+AVDQLLDRSA+ E+ GAT GG+G ++ NALGSLLQTFKVASFAQVEAPAE GG DQ S SAV+ D S EE DG A GG+ D +LP G LFG+RP DSGA WE+IL KSY + Q Q ARLGRGKREKTQV
Sbjct: 1274 EQLNLVIKYGAEDLFREEPDDEAEGXXXXXXXX-XXXXDNEKQTRAEKWGDGSHRGRKVSQWTDEAVDQLLDRSAVAEEEAGATRGEGGDGAA--------SSSNALGSLLQTFKVASFAQVEAPAEDPEVEVAEEGGPATSSGRHPGSSRRESAGTGDQDAS-SAVDMDVSGDGKEE--DGAAAGGE----DAVLPGGPALFGERPADSGAGWEEILAKSYKEQQTSQAARLGRGKREKTQV 1500
BLAST of mRNA_H-paniculata_contig4045.10465.1 vs. uniprot
Match: A0A6H5JZW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW8_9PHAE) HSP 1 Score: 140 bits (352), Expect = 4.000e-34 Identity = 114/242 (47.11%), Postives = 128/242 (52.89%), Query Frame = 1
Query: 1 EQLNLVIKYGAEDLFREELEVEEEDDQDLQNDADKPGGEAEKQTQAEKWGDGSHRGRKVSQWTDDAVDQLLDRSALPEDVDGATTM-GGEGKGXXXXXXXXTNPNALGSLLQTFKVASFAQVEAPAE------GAGGXXXXXXXXXXXXXXXXXEDSDQSRSKSAVEADGSTSPTEEENDGGAVGGDGSADDGLLPSGTPLFGDRPQDSGADWEKILGKSYTKHQKKQQARLGRGKREKTQV 705
EQLNLVIKYGAEDLFREE P EAE KV Q +AVDQLLDRSA+ E+ GAT GG+G ++ NALGSLLQTFKVASFAQVEAPAE GG + SAV+ D S EE+ GAVGG+ D +LP G LFG+RP DSGA WE+IL KSY +HQ Q ARLGRGKREKTQ
Sbjct: 1191 EQLNLVIKYGAEDLFREE-----------------PDDEAEGXXXXXXXXXXXXDNDKV-QAAHEAVDQLLDRSAVAEEEAGATRGDGGDGAA--------SSSNALGSLLQTFKVASFAQVEAPAEDPEVEVAEGGGPATSSGRHRGSSRRESAGTGDQDPYSAVDMDVSGDGKEED---GAVGGE----DAVLPGGPALFGERPADSGAGWEEILAKSYKEHQTSQAARLGRGKREKTQA 1399
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 193.7 |
| Seed ortholog evalue | 9.9e-47 |
| Seed eggNOG ortholog | 2880.D7G7A4 |
| KEGG ko | ko:K11643,ko:K14439 |
| KEGG Pathway | ko04550,ko05165,ko05203,map04550,map05165,map05203 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | peripheral T cell tolerance induction |
| EggNOG OGs | COG0553@1,KOG0383@2759 |
| EC | 3.6.4.12 |
| COG Functional cat. | KL |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03036 |
| Exons | 4 |
| Model size | 741 |
| Cds size | 741 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4045.10465.1 >prot_H-paniculata_contig4045.10465.1 ID=prot_H-paniculata_contig4045.10465.1|Name=mRNA_H-paniculata_contig4045.10465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=247bp
EQLNLVIKYGAEDLFREELEVEEEDDQDLQNDADKPGGEAEKQTQAEKWG DGSHRGRKVSQWTDDAVDQLLDRSALPEDVDGATTMGGEGKGDGGGSGGG TNPNALGSLLQTFKVASFAQVEAPAEGAGGGKKVGDDSNNDEDDDDAEDS DQSRSKSAVEADGSTSPTEEENDGGAVGGDGSADDGLLPSGTPLFGDRPQ DSGADWEKILGKSYTKHQKKQQARLGRGKREKTQVHENTKQEMIER* back to topmRNA from alignment at H-paniculata_contig4045:8409..13965+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4045.10465.1 ID=mRNA_H-paniculata_contig4045.10465.1|Name=mRNA_H-paniculata_contig4045.10465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5557bp|location=Sequence derived from alignment at H-paniculata_contig4045:8409..13965+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GAACAACTCAACCTAGTGATTAAGTACGGAGCGGAGGATCTGTTCAGGGA
GGAGCTGGAGGTAGAAGAGGAGGACGATCAAGACCTGCAAAATGACGCAG
ATAAACCCGGCGGAGAAGCAGAAAAGGTACGAAAACACAAAGGCACGAAG
ACAGCGAAGAGGTACAGATCGACAAAGAAAAGTTACAGGAGCAACATAGA
TGTGCCAATTCAACAAAAAGGTACAGATACAACACAAGGATCCACAGGCG
GCAGCGAAAATGTCAAAGTAGCAGAAACATCTTCCACTCTTGAGGGGTGT
TTTGATTTTGTTTCTCCTGTGGCCTCACGCTTCTAACGTCGATATATATG
TTGACTGAAAGCTCTCGTTACTATTTTTCCAACGTACCCAATATTTTTGG
TAACGAGTAGTTTCTTCGGACACGAAACGCCGATTTACATTATTGGAACA
CAAAATGTGTGTTTTCTGCTCATCTCTTGCCACCAACAACGACCTCATCA
AATGTAAGGGCAGATTCGAGAGGCCTGTAATGCTAGCTTTCGAATTATAC
CTGTGACGGGATACCTGTGACGGGGCATAGCTTGTAAGTAAGTCTACGGC
GTCTACAAACCCCCAAAAGATGGACTGATGGTTCAGCTCATTTTTTCATG
TCACGTACACACGTCTTAATCCAGGGATACCGTTGCCTCAATCCAACGGT
TTTTCCGCACCATGGTCTCCAGCATGACACAACTTTGCGTACCGCGGCGC
TCAGGAGATATGCCCCGATTTGGGGTAGAAAGCTCGAAAAGATAATGTGT
GGGAAACAATCGAGTCGTTTTCATCTAACAGCGTTGAGTTTGATATAACT
GAGAGGGGAACCAACGCCAGCAAACACGACTGGTACATTGTGCGGATTTA
TGCCACACGCGATGGAATACATGCACGAGGGATGGAAGAGCATGTGCATC
GAAGCTTTTGGCAGAGGTCTCAACGACAGAGCAACTGTGGATGTTTGTCA
CACGCCTGAGCGCGGACGGTCGCTCACAGAGCTCAAGATAGTGAAATATC
TTGCGAGGCACATTACAGTTAGTAGGTTATTGGCGTTTCGTTGGTGGCAG
GCACATGGGTAATGAAATGATATGATACAATTTTCGGCGCCGTGGCCTTG
AAAAAAAGTTGAAAAATAACCCCCAGATCACTACTATCAAGCGGAATACT
CGCGTATGGTGTTTAACTTCTTGGTTTTCTCTCTCGCTCGTGCTCCTTAG
ACGACCACAATGTCTCCTTCCCAGCTGGAGTGATTGGACAGGAGGTGCGA
GCCACGCACGAAACGTGACCACTTTCGCCCATAATTACCCTTATCGTACC
TAGTTCTTGGCAGTACCTGTTCTACGACCTATTTTACCCCTTGAAAGCCG
TAATGACTTCCGACGAAAAGACATTGAATTTCCTGAAACATTGGGTAAGT
AAGCACTTGTTGATGTACACCTTTCTCAGTATAGTGTACTCTTATTTCTC
ACTGTGGCACTGGCTAGATGCCAGGCTCTGGGCTAGCACTCGAAAACCCG
AGTACTCCATACGTACCGCGGGCTGTACATCAAACATTTTTTTCCCCCCT
AGTCGCTTCCTTATGTGTTACGGTTTTACGCTTCGATGAGTATCCCGCGA
ATTGAAGATTTTTGGCTATATTTCTTGGTCATGAAATTTAATATACATGA
AGGGTATTATTAACATTCGACATGTGAGAATATGACAAGACCCCCCCTTC
CCCCCCCCCCCCAAGCAAACCCAAGCCGAAAAATGGGGAGACGGGTCACA
CCGGGGGAGAAAGGTGTCCCAGTGGACGGATGATGCCGTGGACCAGTTGC
TAGATCGCTCGGCCTTGCCCGAAGACGTTGATGGGGCGACAACTATGGGA
GGAGAAGGCAAGGGAGATGGTGGCGGCAGCGGCGGCGGCACAAATCCCAA
TGCGTTGGGTTCTTTACTGCAGACTTTTAAGGTGCGAGGTACCGTAGCGA
GCGGGCGGTATGATTAGAGATGGACACCGGCTAGAAAGATAAACGGTTCG
TCGACGTTTTTCCAAATCTGCTTGGTGTGAGAAACGGTTCATCACGATTC
TAGGTTGAATTTTTAGCCGGTGCCTGCTCTATAGAGATGGGCGCAAGCTA
GAAAAAGAAACGGTTCACCGGCTGTTTTTCTTCAGCAGACTTGTTGACGA
ATATCTTTTCCGTTTCTGGATTCTATCCTTAGCCGGTGTCCATCTCTACA
TACGATACCCCCTTCTCCCCCGCCGCCCCCCCCCCCCAATTAGACTGGAC
ATGCGAGAATTAAGGTAGGTAAGGTGGGAAAATCATCTTTGAGCCACATT
TGGCAACGTAGGAAAGAGCGATTGGCTATCGGAAATCGCTTTGATAGGAA
CAAAGATCCGTCCCCCAGAGGACGCATGCATGGTTAACGGTCTAACAACG
ACGGCATACAAATATCAGTACCCCCGCCCCCCTCCCCCAATAATTCGGTC
GCTTCATGGATTCCATCATTCTCTGAAATTTTGAAATTATTGGGCATACT
CGTTCATCCATTTTTTTTTATGGTAGTGGTCACACGTTTTATTCCATTTT
TATACTGTCACTAAGAGCCTTTTCTCGAACCGTGTTCCCACGTTGAAGAT
ACGGCCTTGCTTGTGGAATTGTCCTCAGCAATTGCCTATCCTTGAATCAT
GGGGCGAGAGCATGGAGGGCGCGGAGAGATACACAGTAGGTTACAACATA
AATGTGTTGTATGCTCAGGGTTATTTAGCCCGTAGGTATTGATGGCTATA
CGCTCTCGTCAGAGATTTTCCAATCTCAAAGGGGTATATTTCAAGTTATA
CTCAGACATCTTAAAAAAATTGCCTGAATGCTTCGAATGTCACATATTAA
GAAATTACCGGGGTTCTCCGGTCCCGGTATGTGTTACGTCAGGTGCATGT
GTGTAGTACTTAAGCTCATGGTGTTTTTTTTTCGCGTTACTATTTGTTAT
TATCGGTTGCTAAACACCCTGGTGATTTCGTGTTCCTAAATCGGGTTTCC
AGACAAGAAGAAAGAAATTGAAGTCACTTCTCGGTCGGCTGGAGGAGTAA
GTGCAGTCCGAGCTATGTAAACCAGTCGAGATACTTGGTCGTGAACTAGG
GGAATCAATTATGTGACGCTATGGTTTAGGTTAGGCCCTATCCATAGTTT
CTTTCTGCTGGATTTCCGAATTTTTCTGATTTTCGAATTTCGTTTTTTAT
CATCGACTGTAAGGGGGTTAAGCTAGAAACTCCTGGTGTTTTTTGCAACT
TTCCGCTACACTTGGTCGCGGTTGGATCATTTTGGTGGTTTTCGTGAAGG
AGGGAAGTTACCTTTTTAACCACGTGCAGTCGGTGGTAAAATACGCAAAA
TTCGGAAATCCGGGAAAAGGAAGCCATAAACAGGACTTCAGGTGTTAATC
GTACTTTTTCTATGTAGCACGCCGATAAATAATCAGACCCATTTGTTGCT
CGCCTGTTCGTGTCGCGCGTTTGTTATGGGTGGAGCGTGGTTGTTGTTAC
GGGGACAGCACAGTGTACTTCACTCTCTCCCAATGTGAAGCACGTATGTA
TGTCAAACACGCCCCCCACCCCCCCTCCCTCCTCCTTCCCACACTTGTTC
ATTGCGTTACCTTGCGCCGATAGGTGGCATCCTTCGCGCAAGTAGAGGCT
CCCGCAGAAGGTGCAGGAGGTGGGAAAAAGGTAGGCGACGACAGCAACAA
CGACGAAGATGACGACGACGCGGAAGATTCAGACCAAAGTAGAAGCAAGT
CCGCCGTGGAAGCCGACGGCAGCACATCGCCCACGGAGGAGGAGAATGAC
GGCGGGGCTGTCGGTGGCGACGGGTCGGCCGACGATGGGCTGCTGCCTTC
TGGGACTCCGCTTTTCGGAGATAGACCCCAGGACAGGTAAGGCGGTGTAT
AATGTCTGCCGGTGCTTGGTGGCTTTGGGAATCAACCTCGCAGTAGGTAG
ACCCCAAGCTCATTTCAATATTTTTTTACGTGACCCCAGCATGCGTTATG
ATACCCTTTTTCACACCCACAAGAAGGTGATCCACCCCCCCTCCCCCGGA
AATATCCATTATTGAAATATAGTCCGATAAACCGCATAGCACATTCGTCA
CATCGCACACTCACTCGGTCGCCTTCTCTGACCTGCGACACCGGACCTGT
ACCACAAGGGCTTGATTGACTCTACAATGGGGACCATTCTCTTGTTGCCT
GCCGACGCAGAAAGCGGCACCTTGATTAGCATAGCTGCAGTGGTGGGGAA
AACGCTCATGCTCACGAGTCGGTCTACAGTGGGAAGGGGGGAGGGCGATT
TCGGGGCCGCTCCAGGTCCCTGAGGGTAGCTGCAGTACTCGAGGATCTTG
ACCGCGTCAAGCTCTCGTGTATATTGTGTTTTTTGTGATACGACGCGTAC
GTGGAGTCAGTCGTTGCCTTGCTTTCATGGCGGGAATTTGTTCCCAACTC
CAAGAAAGTGTCGCGTTGTGACAAAAGGAGGGTATCTACTTACCTATCTA
CCTATCCGAAACTCATCACGTCTTCCATCTTGTCTAGAGCTCTCTGGTGG
TCATCCAGACACCCGTTTCCTTGTACCCGCAAAATCCATGTTTCAGTACG
ACGGCACGGTTATTTGGAGCAAGCATACAAGCATATAACCATGCATTCGT
GCAACCATCTGTCGTGAGACCCCTTCCTATATCATTCGAGATTTTAATTC
GCCATGTTGATCACATTTTCCATGTGCCCAGAGTACGCTGCACTGAGTGG
TTGCTGTTTGTATACAGATAAAGATGTAACGTTACGTCAGTAACACGCAC
TCTGTTACTTCATACTGCTGGGACAACCTCCCACCCCCGCCCTGGCTTTT
TCAGCACACCCAACGTTTTCCGTCGCGTCCCTTTGCCACGGCAACGGTCC
AGGTTGACATATCTTCTTCTGGCACCGCCATCGAACACAACAGCATTTTG
TTTTGGTACCAGGTAGAGCACAGTGCTATACGCGGGCGGACATCGATTTT
TTTAGGTTGCTAGGGGCTTGCGCATTGTTTTTCTTAGTGCAGGGAATTAG
TGCATCATGCCATGCCGTCGTTTTGAGTCTCGATTTCTGGTTCAAACTGG
TGGGAGCAGGTATGAGAAAGGTAAGCGCGTCCCTGTACGTGGGGCGCCAA
CACCCGCTTCCTAGTTAAAAGGTGATTTGATATCAGAAATATACGCGATT
CGCTGTTAATGTGTGGAGTTGATTCGTATATATTTTGCTGAACCGGCGCG
GTCGGAACCACTTCACACTTTCATATATAAAGCGGTTTGATTTCGATTTC
AACAAAATGCTTTTCGTTGTCTGTTTCGGACACGTTGATGTGTATGATAC
GTGCGTATTTTGCGGAAACAGCGGGGCGGATTGGGAGAAGATTCTTGGAA
AGAGCTACACCAAGCATCAAAAGAAGCAGCAGGCTCGCTTGGGCAGGGGC
AAGCGGGAAAAGACACAGGTGCATGAAAACACAAAACAAGAAATGATCGA
ACGGTGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig4045:8409..13965+ >mRNA_H-paniculata_contig4045.10465.1 ID=mRNA_H-paniculata_contig4045.10465.1|Name=mRNA_H-paniculata_contig4045.10465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1482bp|location=Sequence derived from alignment at H-paniculata_contig4045:8409..13965+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GAACAACTCAACCTAGTGATTAAGTACGGAGCGGAGGATCTGTTCAGGGA GGAGCTGGAGGTAGAAGAGGAGGACGATCAAGACCTGCAAAATGACGCAG ATAAACCCGGCGGAGAAGCAGAAAAGGAACAACTCAACCTAGTGATTAAG TACGGAGCGGAGGATCTGTTCAGGGAGGAGCTGGAGGTAGAAGAGGAGGA CGATCAAGACCTGCAAAATGACGCAGATAAACCCGGCGGAGAAGCAGAAA AGCAAACCCAAGCCGAAAAATGGGGAGACGGGTCACACCGGGGGAGAAAG GTGTCCCAGTGGACGGATGATGCCGTGGACCAGTTGCTAGATCGCTCGGC CTTGCCCGAAGACGTTGATGGGGCGACAACTATGGGAGGAGAAGGCAAGG GAGATGGTGGCGGCAGCGGCGGCGGCACAAATCCCAATGCGTTGGGTTCT TTACTGCAGACTTTTAAGCAAACCCAAGCCGAAAAATGGGGAGACGGGTC ACACCGGGGGAGAAAGGTGTCCCAGTGGACGGATGATGCCGTGGACCAGT TGCTAGATCGCTCGGCCTTGCCCGAAGACGTTGATGGGGCGACAACTATG GGAGGAGAAGGCAAGGGAGATGGTGGCGGCAGCGGCGGCGGCACAAATCC CAATGCGTTGGGTTCTTTACTGCAGACTTTTAAGGTGGCATCCTTCGCGC AAGTAGAGGCTCCCGCAGAAGGTGCAGGAGGTGGGAAAAAGGTAGGCGAC GACAGCAACAACGACGAAGATGACGACGACGCGGAAGATTCAGACCAAAG TAGAAGCAAGTCCGCCGTGGAAGCCGACGGCAGCACATCGCCCACGGAGG AGGAGAATGACGGCGGGGCTGTCGGTGGCGACGGGTCGGCCGACGATGGG CTGCTGCCTTCTGGGACTCCGCTTTTCGGAGATAGACCCCAGGACAGGTG GCATCCTTCGCGCAAGTAGAGGCTCCCGCAGAAGGTGCAGGAGGTGGGAA AAAGGTAGGCGACGACAGCAACAACGACGAAGATGACGACGACGCGGAAG ATTCAGACCAAAGTAGAAGCAAGTCCGCCGTGGAAGCCGACGGCAGCACA TCGCCCACGGAGGAGGAGAATGACGGCGGGGCTGTCGGTGGCGACGGGTC GGCCGACGATGGGCTGCTGCCTTCTGGGACTCCGCTTTTCGGAGATAGAC CCCAGGACAGCGGGGCGGATTGGGAGAAGATTCTTGGAAAGAGCTACACC AAGCATCAAAAGAAGCAGCAGGCTCGCTTGGGCAGGGGCAAGCGGGAAAA GACACAGGTGCATGAAAACACAAAACAAGAAATGATCGAACGGTGACGGG GCGGATTGGGAGAAGATTCTTGGAAAGAGCTACACCAAGCATCAAAAGAA GCAGCAGGCTCGCTTGGGCAGGGGCAAGCGGGAAAAGACACAGGTGCATG AAAACACAAAACAAGAAATGATCGAACGGTGA back to top
|