prot_H-paniculata_contig4045.10465.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4045.10465.1
Unique Nameprot_H-paniculata_contig4045.10465.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length247
Homology
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BLAST of mRNA_H-paniculata_contig4045.10465.1 vs. uniprot
Match: D7G7A4_ECTSI (Similar to chromodomain helicase DNA binding protein 4 isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A4_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 8.690e-52
Identity = 135/243 (55.56%), Postives = 150/243 (61.73%), Query Frame = 0 
Query:    1 EQLNLVIKYGAEDLFREELEVEEEDDQDLQNDADKPGGEAEKQTQAEKWGDGSHRGRKVSQWTDDAVDQLLDRSALPEDVDGATT-MGGEGKGXXXXXXXXTNPNALGSLLQTFKVASFAQVEAPAEGA-------GGXXXXXXXXXXXXXXXXXEDSDQSRSKSAVEADGSTSPTEEENDGGAVGGDGSADDGLLPSGTPLFGDRPQDSGADWEKILGKSYTKHQKKQQARLGRGKREKTQV 235
            EQLNLVIKYGAEDLFREE + E E              + EKQT+AEKWGDGSHRGRKVSQWTD+AVDQLLDRSA+ E+  GAT   GG+G          ++ NALGSLLQTFKVASFAQVEAPAE         GG                    DQ  S SAV+ D S    EE  DG A GG+    D +LP G  LFG+RP DSGA WE+IL KSY + Q  Q ARLGRGKREKTQV
Sbjct: 1274 EQLNLVIKYGAEDLFREEPDDEAEGXXXXXXXX-XXXXDNEKQTRAEKWGDGSHRGRKVSQWTDEAVDQLLDRSAVAEEEAGATRGEGGDGAA--------SSSNALGSLLQTFKVASFAQVEAPAEDPEVEVAEEGGPATSSGRHPGSSRRESAGTGDQDAS-SAVDMDVSGDGKEE--DGAAAGGE----DAVLPGGPALFGERPADSGAGWEEILAKSYKEQQTSQAARLGRGKREKTQV 1500
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BLAST of mRNA_H-paniculata_contig4045.10465.1 vs. uniprot
Match: A0A6H5JZW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW8_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 4.000e-34
Identity = 114/242 (47.11%), Postives = 128/242 (52.89%), Query Frame = 0 
Query:    1 EQLNLVIKYGAEDLFREELEVEEEDDQDLQNDADKPGGEAEKQTQAEKWGDGSHRGRKVSQWTDDAVDQLLDRSALPEDVDGATTM-GGEGKGXXXXXXXXTNPNALGSLLQTFKVASFAQVEAPAE------GAGGXXXXXXXXXXXXXXXXXEDSDQSRSKSAVEADGSTSPTEEENDGGAVGGDGSADDGLLPSGTPLFGDRPQDSGADWEKILGKSYTKHQKKQQARLGRGKREKTQV 235
            EQLNLVIKYGAEDLFREE                 P  EAE                KV Q   +AVDQLLDRSA+ E+  GAT   GG+G          ++ NALGSLLQTFKVASFAQVEAPAE        GG                   +      SAV+ D S    EE+   GAVGG+    D +LP G  LFG+RP DSGA WE+IL KSY +HQ  Q ARLGRGKREKTQ 
Sbjct: 1191 EQLNLVIKYGAEDLFREE-----------------PDDEAEGXXXXXXXXXXXXDNDKV-QAAHEAVDQLLDRSAVAEEEAGATRGDGGDGAA--------SSSNALGSLLQTFKVASFAQVEAPAEDPEVEVAEGGGPATSSGRHRGSSRRESAGTGDQDPYSAVDMDVSGDGKEED---GAVGGE----DAVLPGGPALFGERPADSGAGWEEILAKSYKEHQTSQAARLGRGKREKTQA 1399
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4045.10465.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7A4_ECTSI8.690e-5255.56Similar to chromodomain helicase DNA binding prote... [more]
A0A6H5JZW8_9PHAE4.000e-3447.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4045contigH-paniculata_contig4045:8409..13965 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4045.10465.1mRNA_H-paniculata_contig4045.10465.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4045 8409..13965 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4045.10465.1 ID=prot_H-paniculata_contig4045.10465.1|Name=mRNA_H-paniculata_contig4045.10465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=247bp
EQLNLVIKYGAEDLFREELEVEEEDDQDLQNDADKPGGEAEKQTQAEKWG
DGSHRGRKVSQWTDDAVDQLLDRSALPEDVDGATTMGGEGKGDGGGSGGG
TNPNALGSLLQTFKVASFAQVEAPAEGAGGGKKVGDDSNNDEDDDDAEDS
DQSRSKSAVEADGSTSPTEEENDGGAVGGDGSADDGLLPSGTPLFGDRPQ
DSGADWEKILGKSYTKHQKKQQARLGRGKREKTQVHENTKQEMIER*
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