mRNA_H-paniculata_contig40288.10430.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40288.10430.1
Unique NamemRNA_H-paniculata_contig40288.10430.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40288.10430.1 vs. uniprot
Match: A0A6A5TBN7_9PLEO (Uncharacterized protein (Fragment) n=1 Tax=Byssothecium circinans TaxID=147558 RepID=A0A6A5TBN7_9PLEO)

HSP 1 Score: 47.8 bits (112), Expect = 5.320e-6
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 2 
Query:   11 SLSNRGSVLRRQGKYDEAKALFGRAMAIVVKVLGPEHPD 127
            S+S  GSVL RQGKY+EA+A+  RA+    KVLG EHPD
Sbjct:    7 SVSQLGSVLERQGKYEEAEAMHQRALEGREKVLGREHPD 45
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BLAST of mRNA_H-paniculata_contig40288.10430.1 vs. uniprot
Match: A0A433A2Z8_9FUNG (Uncharacterized protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433A2Z8_9FUNG)

HSP 1 Score: 47.4 bits (111), Expect = 3.410e-5
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2 
Query:   26 GSVLRRQGKYDEAKALFGRAMAIVVKVLGPEHPD 127
            G  L++ GKYD+AKAL  RA+AI+ KV GPEHP+
Sbjct:   38 GRNLQKPGKYDKAKALSQRALAIIEKVFGPEHPE 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40288.10430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6A5TBN7_9PLEO5.320e-661.54Uncharacterized protein (Fragment) n=1 Tax=Byssoth... [more]
A0A433A2Z8_9FUNG3.410e-561.76Uncharacterized protein n=2 Tax=Jimgerdemannia fla... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40288contigH-paniculata_contig40288:84..557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size173
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40288.10430.1prot_H-paniculata_contig40288.10430.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40288 84..556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930233.3570926-CDS-H-paniculata_contig40288:83..2091622930233.3570926-CDS-H-paniculata_contig40288:83..209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40288 84..209 -
1691481202.46961-CDS-H-paniculata_contig40288:83..2091691481202.46961-CDS-H-paniculata_contig40288:83..209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40288 84..209 -
1622930233.3758676-CDS-H-paniculata_contig40288:511..5561622930233.3758676-CDS-H-paniculata_contig40288:511..556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40288 512..556 -
1691481202.4778063-CDS-H-paniculata_contig40288:511..5561691481202.4778063-CDS-H-paniculata_contig40288:511..556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40288 512..556 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930233.3924818-UTR-H-paniculata_contig40288:556..5571622930233.3924818-UTR-H-paniculata_contig40288:556..557Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40288 557..557 -
1691481202.4855645-UTR-H-paniculata_contig40288:556..5571691481202.4855645-UTR-H-paniculata_contig40288:556..557Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40288 557..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40288.10430.1

>prot_H-paniculata_contig40288.10430.1 ID=prot_H-paniculata_contig40288.10430.1|Name=mRNA_H-paniculata_contig40288.10430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MAASLSNRGSVLRRQGKYDEAKALFGRAMAIVVKVLGPEHPDMAASLSNR
GSVLRRQ
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mRNA from alignment at H-paniculata_contig40288:84..557-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40288.10430.1 ID=mRNA_H-paniculata_contig40288.10430.1|Name=mRNA_H-paniculata_contig40288.10430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=474bp|location=Sequence derived from alignment at H-paniculata_contig40288:84..557- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGGCCGCGTCGCTCAGTAACCGGGGTAGCGTGTTGCGCCGTCAGGTGA
GCCATGTTACGGCGTGTATGTTCATTGGACGGGCACGTTAACACCTGGGG
AATATGTTAATGTCGCTTCGGTGGACGGCGGGAGTAAACAGTTCTCGAGA
TACTCTGGTGCGTAGAAGAGGGTGTCGGTGTGTGTATCGCGTCGCTAAGC
AGGTGGGCGGCGTTGTTCGTAAGCACCGGTAAGAGTCATGGAAGTGGTCC
GATAACTCCGACAGTCCGCTGTACGAGTGTCTACGACACCCAGGGTGGTC
TATTTCTCAGACTCCGCTAACACGTGGGGCGGAAATGTTGGTTGGCAGGG
CAAGTACGACGAGGCGAAAGCGTTATTCGGCAGAGCCATGGCTATCGTAG
TGAAGGTCCTGGGCCCGGAGCATCCAGATATGGCCGCGTCGCTCAGTAAC
CGGGGTAGCGTGTTGCGCCGTCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig40288:84..557-

>mRNA_H-paniculata_contig40288.10430.1 ID=mRNA_H-paniculata_contig40288.10430.1|Name=mRNA_H-paniculata_contig40288.10430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig40288:84..557- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGCGTCGCTCAGTAACCGGGGTAGCGTGTTGCGCCGTCAGATGGC
CGCGTCGCTCAGTAACCGGGGTAGCGTGTTGCGCCGTCAGGGCAAGTACG
ACGAGGCGAAAGCGTTATTCGGCAGAGCCATGGCTATCGTAGTGAAGGTC
CTGGGCCCGGAGCATCCAGATATGGCCGCGTCGCTCAGTAACCGGGGTAG
CGTGTTGCGCCGTCAGGGCAAGTACGACGAGGCGAAAGCGTTATTCGGCA
GAGCCATGGCTATCGTAGTGAAGGTCCTGGGCCCGGAGCATCCAGATATG
GCCGCGTCGCTCAGTAACCGGGGTAGCGTGTTGCGCCGTCAG
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