|
|
Homology
BLAST of mRNA_H-paniculata_contig4026.10428.1 vs. uniprot
Match: A0A6H5KHP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP2_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 1.830e-13 Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 2
Query: 971 GQRGVRRAPVAADTAYDYDFDDEFEGEKGRGGWDYDPELTTGVAARRRGVDIGRVRSRASVAAQRLPLED 1180
G+ R P ADTAYDYD D+E++ E GRGGWDYDP L+ G+ ARRR V + +VR++A A+ R PLED
Sbjct: 197 GEMRRERRPSPADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKAKSASMRRPLED 266
BLAST of mRNA_H-paniculata_contig4026.10428.1 vs. uniprot
Match: D7G0C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C6_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 2.930e-12 Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 2
Query: 989 RAPVAADTAYDYDFDDEFEGEKGRGGWDYDPELTTGVAARRRGVDIGRVRSRASVAAQRLPLED 1180
R +ADTAYDYD D+E++ E GRGGWDYDP L+ G+ ARRR V + +VR++ A+ R PLED
Sbjct: 5 RRTSSADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKTKSASMRRPLED 68
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 79.3 |
| Seed ortholog evalue | 3.8e-12 |
| Seed eggNOG ortholog | 2880.D7G0C6 |
| Hectar predicted targeting category | signal peptide |
| EggNOG OGs | 2EAU4@1,2SH0U@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 1204 |
| Cds size | 1044 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4026.10428.1 >prot_H-paniculata_contig4026.10428.1 ID=prot_H-paniculata_contig4026.10428.1|Name=mRNA_H-paniculata_contig4026.10428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=348bp
MTGVGNPLRITVCVLLVGLCCRTLGLLSCPAIHCRHSSSRPGFATKISQS
LLWHGHGIRTPKPQGRERRRGVAAGVVLAALGESKSQRDEDPLGGGGRRG
GGGSPSGEPRLDTVDPESLARAREAAKNDDYEWFMEFIESDSELTEKSTD
VWVAETEEHSKSRGAETDENARWGRNSRGRGRAAEPAGRPGEGLGVMPGR
SSRQQSASTSQVDEYYGAGGNNRDSQQRRPRGRRASPADDDFNNSGADGG
RFYRSAPSAARGTGRDGTGRGQRGVRRAPVAADTAYDYDFDDEFEGEKGR
GGWDYDPELTTGVAARRRGVDIGRVRSRASVAAQRLPLEDFEPEEVEE back to topmRNA from alignment at H-paniculata_contig4026:9964..11662- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4026.10428.1 ID=mRNA_H-paniculata_contig4026.10428.1|Name=mRNA_H-paniculata_contig4026.10428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1699bp|location=Sequence derived from alignment at H-paniculata_contig4026:9964..11662- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTGGGAGCCTCGAGCGGGCCTATTTGCAGTACGACACTGAGCATTACA
CAGAGTACTGATAGAAGGCAACCCCAGCCAACAATCCGGAGGGGTGGGGG
GGCTTCGTGTTGGTGGTGGTCGTGGCTCTTAGAACCAAGTTTTTTTCCCC
GTAAGACGCAATGACGGGTGTCGGCAATCCACTACGAATTACAGTATGTG
TTCTGCTTGTGGGGCTGTGCTGCCGTACTTTGGGACTACTGTCATGTCCA
GCGATACATTGCCGCCACTCTAGTTCTCGACCTGGGTTTGCCACCAAGAT
TTCTCAGAGCCTTTTATGGCATGGACACGGCATTCGGACACCGAAGCCTC
AGGGGCGAGAGAGGCGGAGGGGCGTTGCAGCAGGTAGAGACTCTAATTTC
ATCCTGTCACATCTCTCACCACTCTTGGGTTTAAAGTACTGTCCAAAGTG
TTCTTAATTGTACTGACAGTATTAATATTTGTTCAAGCTATCGAGCGAGG
GCACCTTTGCGCAGCTGAAGTACAGTCAGCTGAGAAGTAAGTATGCTGTC
GACATGGACTGTTACAGCCATATTATTAAGGAAATATATTGTTTGGGCAG
CTGTTGGGACAAAAAACAAAAAAAAATACTGTCTGCAATATTGACAGTAC
TTGCTTGTATCCGACCCTTATTTTTCAGTATCCCATCGTACATTCGTTCT
CATTACATGTACAGGATTCAAATCATCATGAGGTAGTGTTGACCTATTTT
TGAGCTCCTCTTGTAAATGTACACGCCATAATACTTCACCCATGGTCACG
TACAGAAAATTAGAGTTTCCCATGAATTGTAGAACCTACCCGCTACTACT
ACCCGTCGGTGCATTTTTGTCCTCTCAGGTGTTGTGCTCGCAGCGCTCGG
CGAGAGCAAATCACAGCGAGACGAAGATCCGCTGGGAGGTGGCGGCCGCC
GCGGCGGTGGCGGCAGTCCAAGCGGTGAACCCAGATTAGACACTGTCGAT
CCTGAGAGCCTGGCGCGAGCCCGAGAAGCTGCGAAGAATGACGACTACGA
GTGGTTCATGGAGTTTATCGAGAGTGATAGCGAACTCACAGAAAAATCCA
CCGACGTGTGGGTTGCCGAAACCGAGGAGCACTCCAAATCCCGAGGGGCG
GAAACCGACGAAAACGCGCGGTGGGGACGGAACAGCCGTGGCCGCGGCCG
GGCGGCCGAACCTGCTGGGCGGCCGGGCGAGGGCCTGGGCGTCATGCCCG
GTCGTAGCAGTAGGCAGCAAAGTGCCAGTACAAGTCAGGTAGACGAATAT
TATGGCGCCGGGGGTAACAACCGCGACTCGCAGCAGCGACGCCCGAGGGG
TCGTCGCGCTTCTCCTGCGGACGATGACTTCAACAATAGCGGCGCCGACG
GCGGTCGCTTTTACCGTAGTGCACCCTCTGCCGCCCGCGGGACTGGACGC
GACGGCACGGGGCGGGGGCAACGTGGGGTGCGAAGAGCCCCCGTCGCCGC
TGACACGGCATATGACTATGACTTCGACGATGAATTCGAGGGGGAGAAGG
GGCGCGGAGGTTGGGATTATGATCCAGAGCTTACGACCGGAGTAGCCGCG
CGCCGGCGAGGCGTAGATATTGGGCGGGTCAGGTCGAGGGCGAGCGTTGC
TGCTCAGCGTTTGCCTTTGGAAGATTTTGAGCCGGAGGAAGTCGAGGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig4026:9964..11662- >mRNA_H-paniculata_contig4026.10428.1 ID=mRNA_H-paniculata_contig4026.10428.1|Name=mRNA_H-paniculata_contig4026.10428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2088bp|location=Sequence derived from alignment at H-paniculata_contig4026:9964..11662- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGGTGTCGGCAATCCACTACGAATTACAGTATGTGTTCTGCTTGT
GGGGCTGTGCTGCCGTACTTTGGGACTACTGTCATGTCCAGCGATACATT
GCCGCCACTCTAGTTCTCGACCTGGGTTTGCCACCAAGATTTCTCAGAGC
CTTTTATGGCATGGACACGGCATTCGGACACCGAAGCCTCAGGGGCGAGA
GAGGCGGAGGGGCGTTGCAGCAGATGACGGGTGTCGGCAATCCACTACGA
ATTACAGTATGTGTTCTGCTTGTGGGGCTGTGCTGCCGTACTTTGGGACT
ACTGTCATGTCCAGCGATACATTGCCGCCACTCTAGTTCTCGACCTGGGT
TTGCCACCAAGATTTCTCAGAGCCTTTTATGGCATGGACACGGCATTCGG
ACACCGAAGCCTCAGGGGCGAGAGAGGCGGAGGGGCGTTGCAGCAGGTGT
TGTGCTCGCAGCGCTCGGCGAGAGCAAATCACAGCGAGACGAAGATCCGC
TGGGAGGTGGCGGCCGCCGCGGCGGTGGCGGCAGTCCAAGCGGTGAACCC
AGATTAGACACTGTCGATCCTGAGAGCCTGGCGCGAGCCCGAGAAGCTGC
GAAGAATGACGACTACGAGTGGTTCATGGAGTTTATCGAGAGTGATAGCG
AACTCACAGAAAAATCCACCGACGTGTGGGTTGCCGAAACCGAGGAGCAC
TCCAAATCCCGAGGGGCGGAAACCGACGAAAACGCGCGGTGGGGACGGAA
CAGCCGTGGCCGCGGCCGGGCGGCCGAACCTGCTGGGCGGCCGGGCGAGG
GCCTGGGCGTCATGCCCGGTCGTAGCAGTAGGCAGCAAAGTGCCAGTACA
AGTCAGGTAGACGAATATTATGGCGCCGGGGGTAACAACCGCGACTCGCA
GCAGCGACGCCCGAGGGGTCGTCGCGCTTCTCCTGCGGACGATGACTTCA
ACAATAGCGGCGCCGACGGCGGTCGCTTTTACCGTAGTGCACCCTCTGCC
GCCCGCGGGACTGGACGCGACGGCACGGGGCGGGGGCAACGTGGGGTGCG
AAGAGCCCCCGTCGCCGCTGACACGGCATATGACTATGACTTCGACGATG
AATTCGAGGGGGAGAAGGGGCGCGGAGGTTGGGATTATGATCCAGAGCTT
ACGACCGGAGTAGCCGCGCGCCGGCGAGGCGTAGATATTGGGCGGGTCAG
GTCGAGGGCGAGCGTTGCTGCTCAGCGTTTGCCTTTGGAAGATTTTGAGC
CGGAGGAAGTCGAGGAGGTGTTGTGCTCGCAGCGCTCGGCGAGAGCAAAT
CACAGCGAGACGAAGATCCGCTGGGAGGTGGCGGCCGCCGCGGCGGTGGC
GGCAGTCCAAGCGGTGAACCCAGATTAGACACTGTCGATCCTGAGAGCCT
GGCGCGAGCCCGAGAAGCTGCGAAGAATGACGACTACGAGTGGTTCATGG
AGTTTATCGAGAGTGATAGCGAACTCACAGAAAAATCCACCGACGTGTGG
GTTGCCGAAACCGAGGAGCACTCCAAATCCCGAGGGGCGGAAACCGACGA
AAACGCGCGGTGGGGACGGAACAGCCGTGGCCGCGGCCGGGCGGCCGAAC
CTGCTGGGCGGCCGGGCGAGGGCCTGGGCGTCATGCCCGGTCGTAGCAGT
AGGCAGCAAAGTGCCAGTACAAGTCAGGTAGACGAATATTATGGCGCCGG
GGGTAACAACCGCGACTCGCAGCAGCGACGCCCGAGGGGTCGTCGCGCTT
CTCCTGCGGACGATGACTTCAACAATAGCGGCGCCGACGGCGGTCGCTTT
TACCGTAGTGCACCCTCTGCCGCCCGCGGGACTGGACGCGACGGCACGGG
GCGGGGGCAACGTGGGGTGCGAAGAGCCCCCGTCGCCGCTGACACGGCAT
ATGACTATGACTTCGACGATGAATTCGAGGGGGAGAAGGGGCGCGGAGGT
TGGGATTATGATCCAGAGCTTACGACCGGAGTAGCCGCGCGCCGGCGAGG
CGTAGATATTGGGCGGGTCAGGTCGAGGGCGAGCGTTGCTGCTCAGCGTT
TGCCTTTGGAAGATTTTGAGCCGGAGGAAGTCGAGGAG back to top
|