mRNA_H-paniculata_contig4017.10406.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4017.10406.1 vs. uniprot
Match: D8LTL2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL2_ECTSI) HSP 1 Score: 500 bits (1288), Expect = 2.440e-152 Identity = 380/914 (41.58%), Postives = 478/914 (52.30%), Query Frame = 1
Query: 1 SRFTRAARILFSQAARDELREREL---SATTTHKEEANVLLAKPCHDMTACAADDHLNLIATAATSDGGIERIVHTTAMISSNSQALGGRGISSGTGRPSSCVHVWDAEMMTLIGTLLFPCLHLTRDLANAATAFGMSYSRKSTVVSQSDPADDSSVSTKASPAVFTAVGPPSARTAQSPTLTVSFQYKRTRTDQPASGSAADVPDPAXXXXXXXXXXXXXXRPVLITALEFLSPFPLLAGACTGGAVALWRVLDCVCVQVNVPGRGPSDHTHSSETFSHYITQSAILQPKHLKDLRGRG----RGTGG-----MAAEEEKNLTCLARGKLTSENREENTVIYCGNERGDILMAYFSRAELSSFSGKAQGPVPCQRRANHNPYRAVHVALTPQDSLISFRAACRAQNKAAADLGGPNYASFRPNSN----RRRARAPSGDE-GTERFAVSSMVFQAAWVAHSAAVSSISWIDSPPSLLSASADGLAKIWGPGDGTLLGQLDINNKRPERSL---SSGSRHWTFLPQGSHHPRRQTSSATQAAESDLNDRHKTHSGKRPELDEPGAAQAKSKGGS-------TSSSRRRQRPTESRKRESRQEATDKGTPEFRSA----------DCCFEVCGTPNGCGRNNNVRRVSLVSPRMDQRTKQHGVNTDIQP-EAGLTFEGGREQLRQFEQTLETSSSDRRRRAEHATVTTCAMGGASFSRTARRAPLTGKRWRTTSGPWCAVDDTL-ERSASAHELGQVPSDGDNDFPLCKVKGKRGYVRPRPGTAEDAIIKRAQRKDATGIVVKDMNIGKPKPDLMRGRPLEEWLMPSAGNDEI-------EPTVRFGVGSASASMDQ-MTGLPPVAILAGSRGGRLVVSGVTIAGDRGGGGFNITAARAAAKEGVRLAAVKEGLS 2601
SR AAR L S A RDEL ERE+ + ++++AKP DMTACAADDHL++IATA TSDGG+E + + + N + S+ GR SS +H+WDAE M+L+GTLL PCL LTRDL +AA AF S V+Q P D S+ ++P V + G ++PT TV + T RP L+TAL FLSP+PLL GA TGGAV +WR LDCVCVQ +P + + FS AIL P L LR + G+GG A+EE+ LTCLARG T EE T IY GN GDI+ A+ S EL+ SG A+GPV CQRR NHNPYRAV + LTPQ + S +AAC AQ +AAA GG A ++ RRR + S D G +FAV S F +AW AHS AV+SISWI SPPSLLS+SADGLAKIW P +LGQLDINN+RPER + + SRHW F+P GS P + + E L+ TH + + K+ G S TSSS + T FR D E T G GRN R N QP E GL QL+ FE+ LE SSS R +AE + M A+ R+ PL GKRWRT S PW A D++L ERS S L P+ G + KG RGYVRP G+AEDA +KR + + ATG+V+KD + + ++GRPL EW+ G + + EP G+ + MD+ + GLPPVA+LAGS GGRL+ SG+TIAGDRGGGGFN+ AARAAA+ R AA+ E L+
Sbjct: 802 SRLASAARTLMSSAVRDELLEREILNGDKVNENGVRGDLIIAKPTFDMTACAADDHLSIIATAVTSDGGVEATMPAESGGAPNKDQMA----STRVGRASSSLHLWDAERMSLLGTLLAPCLALTRDLTDAAAAF--SVHPHCAAVAQ-PPVDPSATDPPSTP-VESLHGNNKDMDGENPTATVGNE---TXXXXXXXXXXXXXXXTDKQHAATTKTGTGLNRPALVTALMFLSPYPLLMGASTGGAVVVWRTLDCVCVQGQMPAVQVDNKKYGRSPFS--FNAQAILLPADLASLRKKNISAAGGSGGHLREESGAKEEETLTCLARGTFTGSTGEETTSIYVGNGNGDIVAAHLSPTELAELSGDAKGPVQCQRRPNHNPYRAVRMELTPQVARFSLQAACSAQKQAAA--GGNGEAGVAGGAHADMPRRRQKGSSSDGVGAYKFAVPSSGFHSAWAAHSGAVTSISWIRSPPSLLSSSADGLAKIWKPDGSAMLGQLDINNRRPERGMYLAAEASRHWAFVP-GSGGP-----ADCRHEEDGLDQEKLTHDTAKATTATTDSVVKKTIGNSGELTVNDTSSSTK--------------------TNSFRGGGGNVEGDLHDDVGDEADSTGAGPGRNERRGRSGXXXXXXXXXXXXXXRNEKTQPDEGGLRSPDPTRQLQDFEEALEASSSKRTPKAERFHLGR-PMSLATMQ-PIRKMPLCGKRWRTKSAPWPAEDESLLERSVSEQGL---PTAG--SVRVGTHKGMRGYVRPTAGSAEDAALKRTKSRGATGVVLKDTMGEESGRNSLQGRPLGEWVAQPEGENAVPCIDGTGEPANTVARGAGESPMDKTIKGLPPVAVLAGSHGGRLIASGITIAGDRGGGGFNVKAARAAARTATRRAALAEELA 1667
BLAST of mRNA_H-paniculata_contig4017.10406.1 vs. uniprot
Match: A0A6H5KIK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIK5_9PHAE) HSP 1 Score: 337 bits (864), Expect = 4.270e-95 Identity = 323/958 (33.72%), Postives = 404/958 (42.17%), Query Frame = 1
Query: 280 GRPSSCVHVWDAEMMTLIGTLLFPCLHLTRDLANAATAFGMSYSRKSTVVSQSDPADDSSVSTKASPAVFTAVGPPSARTAQSPTLTVSFQYKRTRTDQPASGSAADVPDPAXXXXXXXXXXXXXXRPVLITALEFLSPFPLLAGACTGGAVALWRVLDCVCVQVNVPGRGPSDHTHSSETFSHYITQSAILQPKHLKDLRGRGRGTGGMAAEEEKNLTCLARGKLTSENREENTVIYCGNERGDILMAYFSRAELSSFSGKAQGPVPCQRRANHNPYRAVHVALTPQDSLISFRAACRAQNKAAADLGGPNYASFRPNSN--RRRARAPSGDE-GTERFAVSSMVFQAAWVAHSAAVSSISWIDSPPSLLSASADGLAKIWGPGDGTLLGQ----------------------------------------------------------------------------------------------------------------------LDINNKRPERSL---SSGSRHWTFLPQGSHHPR---------------RQTSSATQAAE----------------SDLNDRHKTHSGK------RPELDEPGAAQAKSKGGSTSSSRRRQRPTESRKRESR-------QEATDKGTPEFRSADCCFEVCGTPNGCGRNNNVRRV-------SLVSPRMDQRTKQHGVNTDIQPEAGLTFEGGREQLRQFEQTLETSSSDRRRRAEHATVTTCAMGGASFSRTARRAPLTGKRWRTTSGPWCAVDDTL-ERSASAHELGQVPSDGDNDFPLCKVKGKRGYVRPRPGTAEDAIIKRAQRKDATGIVVKDMNIGKPKPDLMRGRPLEEWLMPSAGNDEI-------EPTVRFGVGSASASMDQ-MTGLPPVAILAGSRGGRLVVSGVTIAGDRGGGGFNITAARAAAKEGVRLAAVKEGLS 2601
GR SS +H+WDAE M+L+GTLL PCL LTRDL NAA AF S R+ V+Q P D S+ + ++P V ++ G +PT TV +AA RP L+TAL FLSP+PLL GA T GAV +WR LDCVCVQ V S T+ L R L A + E T+IY GN GDI+ A+ S EL+ SG A+GPVPCQRR NHNPYRAV V LTPQ + S +AACR Q +AAA G + +++ RRR + S D G FAV S F +AWVAHS AV+SISWI SPPSLLS+SADGLAKIW P +LGQ LDIN++RPER++ + SRHW F+P GS P T+ AT A +D KT S + +L + +A S G + RR R E T RS D N N+N R P + Q + E F ++L+ FE+ LE SSS R +AE + M AS R+ PL GKRWRT S PW A D++L ERS S L P+ G + KG RGYVRP G+AEDA +KR + + ATG+V+K GRPL EWL G + EP G+ + MD+ + GLPPVA+LAGS GGRL+ SG+TIAGDRGGGGFN+ AARAAA+ R AA+ E L+
Sbjct: 405 GRASSSLHLWDAERMSLLGTLLVPCLALTRDLTNAAAAF--SVHRRCAAVAQ-PPVDPSATDSSSTP-VESSHGNNKDMGGDNPTATVGKXXXXXXXXXXVRHTAAAT----EKQHAASKTGTGLNRPALVTALMFLSPYPLLMGASTEGAVVVWRTLDCVCVQGKVRHSRNGVSILSINIHPFVRTRYTFLSRADENTPHARP-------------LVVFAMSFVHRWPPTETTLIYVGNGNGDIVAAHLSPTELAELSGPAKGPVPCQRRPNHNPYRAVRVELTPQVARFSLQAACRVQKQAAAGGNGEAGVAGGVHADMPRRRQKGSSSDGVGPNNFAVPSSGFHSAWVAHSGAVTSISWIKSPPSLLSSSADGLAKIWKPDGSAMLGQASLRFASLLNDVCARPVPWMLYRGSHRHGSNNQTWHVAPALVRSASTPSLSHLAALADGHRRMFHAIFTSSQKSGTLINWGATSSGFDQQRSKATPPLEGFNSMTLDRISSPPCHVMQLDINDRRPERAMYLAAEASRHWAFVP-GSGGPADCRHEKDDLDQEKVTHDTAKATTATTDCVVKETIGNSEELTVNDTTSNTKTDSFRGGDGNLEGDLHDDVGVEADSTGAGPGWNERRGRSGRQXXXXXXXXXXXXXDEKTHPDGGGLRSPDPTRGSSKHDNSDINNSNRARTWRSCDDHEWQRPYRCRCDNQEETDMQSNIEVNQLFGRQDQKLQDFEEALEASSSKRTPKAERFHLGR-PMSLASMQ-PIRKTPLCGKRWRTKSAPWTAEDESLLERSMSEQGL---PTAG--SVRVGTHKGMRGYVRPTVGSAEDAALKRTKSRGATGVVLK-------------GRPLREWLAQPEGECVVPCIAGTGEPANAVARGAGESPMDKTIKGLPPVAVLAGSHGGRLIASGITIAGDRGGGGFNVKAARAAARTATRRAALAEELA 1320
BLAST of mRNA_H-paniculata_contig4017.10406.1 vs. uniprot
Match: F0YF09_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YF09_AURAN) HSP 1 Score: 68.6 bits (166), Expect = 5.800e-8 Identity = 76/301 (25.25%), Postives = 127/301 (42.19%), Query Frame = 1
Query: 670 ITALEFLSPFPLLAGACTGGAVALWRVLDCVCVQV------NVPGRGP---SDHTHSSETFSHYITQSAILQPKHLKD----LRGRGRGTGGMAAEEEKNLTCLARGKLTSENREENTVIYCGNERGDILM-----AYFSRAELSSFSGKAQGPVPCQRRANHNPYRAVHVALTPQDSLISFRAACRAQNKAAADLGGPNYASFRPNSNRRRARAPSGDEGTERFAVSSMVFQAAWVAHSAAVSSISWIDSPPSLLSASADGLAKIWGPGDGTLLGQLDINNKRPERSLSSGSRHWTFLPQ 1518
+TA+ FL+PFP+L G + G LWRV +C + P P D+ + + ++T + + D G G G G ++ + G++ + V+ G + G ++ ++F+R L VP RR +NP R VH + +++ R++ + DLGG R+ + ++R + VFQA V+S+ I+ P ++L+AS DGLA+IW +G L+GQLD+N RP W F+ Q
Sbjct: 983 VTAIGFLTPFPVLCGLTSTGVAHLWRVPECGILHTLDYRDEPPPQAVPWYHKDYVAPDKKANAFVTAHVVALEDPVDDGPADADGAGAGDGRAFVTDDAASASSSHGRI-------DAVVGGGTDGGGVVTWALRSSFFARLNLRR--------VPPVRRRTYNPGRQVH-------TTVNWSELRRSRRLSQVDLGG-------------RSSLANVAGASDRDSWDLAVFQAH---DDVEVTSLQIIEKPRTILTASEDGLARIW-TWNGVLVGQLDVN--RPAGGDGPRKVPWDFVVQ 1242 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4017.10406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4017.10406.1 >prot_H-paniculata_contig4017.10406.1 ID=prot_H-paniculata_contig4017.10406.1|Name=mRNA_H-paniculata_contig4017.10406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=867bp SRFTRAARILFSQAARDELRERELSATTTHKEEANVLLAKPCHDMTACAAback to top mRNA from alignment at H-paniculata_contig4017:521..8443- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4017.10406.1 ID=mRNA_H-paniculata_contig4017.10406.1|Name=mRNA_H-paniculata_contig4017.10406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7923bp|location=Sequence derived from alignment at H-paniculata_contig4017:521..8443- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4017:521..8443- >mRNA_H-paniculata_contig4017.10406.1 ID=mRNA_H-paniculata_contig4017.10406.1|Name=mRNA_H-paniculata_contig4017.10406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5202bp|location=Sequence derived from alignment at H-paniculata_contig4017:521..8443- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |