mRNA_H-paniculata_contig401.10399.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig401.10399.1 vs. uniprot
Match: D8LQH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH9_ECTSI) HSP 1 Score: 162 bits (411), Expect = 7.000e-40 Identity = 189/509 (37.13%), Postives = 228/509 (44.79%), Query Frame = 1
Query: 247 MEEFMAAAHEKRLQAMEAVKAEVQRGYEQQITELQAQLATLP--ASASPVMAAATAGGSSQAIRSGTG-----------SPHPAYVARAERPGWETRWGLEEVGRVSGTVADTVFNXXXXXXXXXXXXXXXXXXXXXXXXXXLSGTTAPTSDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGIVCLVFPNTLRSAYRYTVARQDRPGWEARWGAEEPAR----VSGLSETTAPT-------------SDVNPAYAEXXXXXXXXXXXXAARQDRPGWEARWGAEEPARVSGLSEATASTVPIT-----STPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAAVTTSTV----GESSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEEIAVAGAAAGFATAGGLEEAPVSAKSDSDIGVTDPTTRHGASGDPLAYDLLPQDVAELQGLVVSTRRQFQEYMVHSLEANNQVKVAKASLDLELSR 1656
M EFMA AHE RLQAMEAVK EVQRGYE+QI +LQ++LA LP A A AAATA + + + G G + HP+Y AR+ RPGWE RWG EE R S V + ++ +AP A P + AY AR RPGWE RWGAEEPAR V+G T+AP +DV+PAYA AR RPGWE RWG+EEPAR++ + ST IAA +T+ G+++ XXXXXXXXXXXXXXXXXXXXXXXXXXXX A IAVAGAAAGFATAG L GA DPLA + L DVAEL+ +VVS RR FQ+Y++ SL A+N++K + A L+ ELSR
Sbjct: 1 MAEFMAKAHENRLQAMEAVKKEVQRGYEEQIADLQSKLAALPPPADADKGAAAATAFRAEEPVLVGVGQGASMGFAGGAAQHPSYAARSARPGWEARWGAEEPARASPAVTAADVSSMESR---------------------VAAASAPGGGAVHPAYAARAQRPGWEERWGMEEPARKTMAAASTSASAEVVPQAQGKAAA-PADVHPAY---AARTQRPGWEERWGAEEPARKTMTVAGAGSTSAPAEVATQALGTPAAPADVHPAYA--------------ARTQRPGWEERWGSEEPARMTAATAXXXXXXXXXXXXXXSTAASPPADVHPAYAARAQRPGWEARWGSEEPARMIAATSTAGAPTASGKTALPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGADAGAIAVAGAAAGFATAGXLXXXXXXXXXXXXX-----XXXXGAGDDPLADEFLTDDVAELRSMVVSNRRSFQDYLLKSLWASNELKQSNAVLEAELSR 465
BLAST of mRNA_H-paniculata_contig401.10399.1 vs. uniprot
Match: A0A6H5KQ96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ96_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 2.810e-9 Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 1
Query: 1486 GASGDPLAYDLLPQDVAELQGLVVSTRRQFQEYMVHSLEANNQVKVAKASLDLELSR 1656
GA DPLA + LP DVAEL+ +VVS RR FQ+Y++ SLEA+N++K + A L++ELSR
Sbjct: 90 GAGDDPLADEFLPDDVAELRSMVVSNRRSFQDYLLKSLEASNELKQSNAKLEVELSR 146 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig401.10399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig401.10399.1 >prot_H-paniculata_contig401.10399.1 ID=prot_H-paniculata_contig401.10399.1|Name=mRNA_H-paniculata_contig401.10399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=552bp FLFDVQYVSGFTLSALGIRTSTGRVFGTSSIALQSRQQRRQQPSSREKVIback to top mRNA from alignment at H-paniculata_contig401:205..8883- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig401.10399.1 ID=mRNA_H-paniculata_contig401.10399.1|Name=mRNA_H-paniculata_contig401.10399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8679bp|location=Sequence derived from alignment at H-paniculata_contig401:205..8883- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig401:205..8883- >mRNA_H-paniculata_contig401.10399.1 ID=mRNA_H-paniculata_contig401.10399.1|Name=mRNA_H-paniculata_contig401.10399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3312bp|location=Sequence derived from alignment at H-paniculata_contig401:205..8883- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |