mRNA_H-paniculata_contig4006.10391.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4006.10391.1
Unique NamemRNA_H-paniculata_contig4006.10391.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4006.10391.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 4.360e-30
Identity = 53/78 (67.95%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:   73 PAPLKLTLTDFEGADEICFNAGASSQALSVFLERCEARGIVAVATLWADLTTSFSPVTVKSCLPSQTCRRWNCACGRQ 306
            P P +  L DF GAD++CFNA ASS+ L++FLERCEA G+ +++ LWADLTTSFS +TVKSCLPSQ+C RWNCACGRQ
Sbjct:  418 PTPRRYKLDDFAGADDVCFNAAASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRQ 495
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BLAST of mRNA_H-paniculata_contig4006.10391.1 vs. uniprot
Match: A0A6H5J5W8_9PHAE (POLAc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5W8_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.010e-24
Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:   70 APAPLKLTLTDFEGADEICFNAG----------------------------ASSQALSVFLERCEARGIVAVATLWADLTTSFSPVTVKSCLPSQTCRRWNCACGRQ 306
            +P P +  L DF GAD++CFNA                             ASS+ L++FLERCE  G+ +++ LWADLTTSFS +TVKSCLPSQ+C RWNCACGRQ
Sbjct:  366 SPTPRRYKLDDFAGADDVCFNAASTVQTSTMGRLPPYPATSPAVILPRNSAASSEGLAIFLERCEVSGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRQ 472
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4006.10391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK42_ECTSI4.360e-3067.95DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5J5W8_9PHAE2.010e-2448.60POLAc domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4006contigH-paniculata_contig4006:11691..13587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue6.8e-26
Seed eggNOG ortholog2880.D7FK42
Preferred namePOL1A
KEGG rclassRC02795
KEGG koko:K02335,ko:K02349
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930227.9864724-CDS-H-paniculata_contig4006:11690..118261622930227.9864724-CDS-H-paniculata_contig4006:11690..11826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 11691..11826 +
1691481200.0868104-CDS-H-paniculata_contig4006:11690..118261691481200.0868104-CDS-H-paniculata_contig4006:11690..11826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 11691..11826 +
1622930228.0023813-CDS-H-paniculata_contig4006:13417..135871622930228.0023813-CDS-H-paniculata_contig4006:13417..13587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 13418..13587 +
1691481200.0993402-CDS-H-paniculata_contig4006:13417..135871691481200.0993402-CDS-H-paniculata_contig4006:13417..13587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 13418..13587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4006.10391.1prot_H-paniculata_contig4006.10391.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4006 11691..13587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4006.10391.1

>prot_H-paniculata_contig4006.10391.1 ID=prot_H-paniculata_contig4006.10391.1|Name=mRNA_H-paniculata_contig4006.10391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
KASTPSPRGRGGSGPRAADCGPAAPAPLKLTLTDFEGADEICFNAGASSQ
ALSVFLERCEARGIVAVATLWADLTTSFSPVTVKSCLPSQTCRRWNCACG
RQ
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mRNA from alignment at H-paniculata_contig4006:11691..13587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4006.10391.1 ID=mRNA_H-paniculata_contig4006.10391.1|Name=mRNA_H-paniculata_contig4006.10391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1897bp|location=Sequence derived from alignment at H-paniculata_contig4006:11691..13587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGCATCGACTCCGTCTCCTCGTGGACGGGGTGGGTCGGGTCCGCGTGC
GGCGGATTGCGGCCCGGCGGCCCCGGCGCCTCTGAAGTTAACCTTGACGG
ATTTCGAGGGTGCTGATGAGATTTGCTTCAACGCCGGTAGGTCAAGAGGA
CATTAGCAACGACTGTCTCCTATTAATTGGCGGCGATTGCCGGTTTGGGC
ACGAGAAATGTCATTTGTCCATTTGCGGCAGCGCAACCCTAATGTTGAGG
CCACTGTGCCTGCGTTGTCGCCATCCCTGTGCCATTCCCGAAATATTGTG
TTCTGATGATATACGTCTCCGGGTGAGAATATTGAGAAGGCGAGTCAGAC
AAAGACACATTTTTCGTTCGACCCTCTCCTTGATTTCTGAAATAATCCGG
TTGAGGCGTGCGCGCTGGTGGGAGCGGGGTACACCCACCTGGCGTTTGCA
GTCGTTTTTGATGGCATTCACGTTTGTGGCGTCAACATAGGGGAAACGCT
TGCTCGCTATACCGCCGCGGAACCTCTTGAGAGTCTAGGTAGTGACCCAT
TCAGCGATCGAGGATAGAGTACGGTGTTAGGCTCGGAAACGTTCTCCGGC
GAATCTCGATGGAAGGAAATCATTATATCTTCTCCCCCGCTCCCCCAGGG
GACATTTTTGTACTGTAAGTATCCTCTACATGCAACATTGTAGGACAATC
ACGTCGTTAAGAGGTTACGCCAAACAACGAGGCTGGTGAAACTCACACAA
GGGATGCTAAAGCAGAGTACCCTGGGATACGTTCTATAGCGCGGGTCTTA
CAGAACAGAAAACTCCGTGTTGATATGCTCCCCCTCTAGATCCTGGGAAG
GACTCTTACTAAACTTGTCAAGCATTTGAATGTTTGCATCAGTACGGAAC
CAACTCCCATGAGATCTATCTCGTTCGAAAACCCGCCAATGGTGGGTGTG
GGCACGCATCGATTTGTTGGTCATGTCCTTCAATATCAGCGTTTGCGTCA
TCACGAAGCAACCCGCAAATCCAGCTTGCTCCTACGCAGCCATATGGCTA
ACCCTAACAATCGTTGGACCTTTTTTATGGGTGAAATTGACCGTGGATTT
CTTTACGAGGTCACTTTCGAACTCTATCAGAATAAGAGGTTGTAACGTAT
ACTCAGGCGGCACTCGCATGTATGTTTAGGCTGTCAACTACTGTAGAGGC
GTTTGATATCTGTGCGAATCCAAATATTCGCCGTCTTACGAGCCTTGGAC
GTAAAATCGGCTAACTCGGTGTGATTGTAGGGTGTGCGTCGGTAAATGAC
GCAACGACCAAGTATGTGCCACTTAGAAGAACCGAACCAGTTCCCAAATA
CAATATGCACTACGTGCGCCGCAGATGTGATAATATCGAGTGCTTGAACG
GTGACAGATATTAGATGGATCGACGGGTTGGACATTCGCCACATGTTGCA
GGTGTCAATGTCCTATTGTGGAGGATTAGTCATATTCAAGTATTCCATGT
AGGGGGCGAAGAGTGGTGGAACATGCATGATCTGTTGCATAGAAAAACGA
GATGAGTTTAGAGTGAGGTGTGACTCCTCGCCAACCGATCAAGTTGTTCC
GAGTCACCACAAACACCCTACGTTTCGGCATTTTTTGTTGTGGGTTGTTG
CTAGTCGTCCCTCGTTTATTTTCTCTCTCTGTATTTCTTCTCCTTCTTCT
GGCCTTCCTCCTCGATTTCCTTTCAAGGCGCGTCGTCGCAAGCTCTTTCC
GTCTTCCTGGAGCGCTGCGAGGCGAGGGGTATTGTAGCGGTGGCGACGCT
GTGGGCAGACTTGACCACGAGCTTCTCGCCCGTGACGGTGAAAAGCTGCC
TTCCGAGTCAGACCTGTAGGCGATGGAACTGTGCCTGTGGCCGACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4006:11691..13587+

>mRNA_H-paniculata_contig4006.10391.1 ID=mRNA_H-paniculata_contig4006.10391.1|Name=mRNA_H-paniculata_contig4006.10391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig4006:11691..13587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGCATCGACTCCGTCTCCTCGTGGACGGGGTGGGTCGGGTCCGCGTGC
GGCGGATTGCGGCCCGGCGGCCCCGGCGCCTCTGAAGTTAACCTTGACGG
ATTTCGAGGGTGCTGATGAGATTTGCTTCAACGCCGAAAGCATCGACTCC
GTCTCCTCGTGGACGGGGTGGGTCGGGTCCGCGTGCGGCGGATTGCGGCC
CGGCGGCCCCGGCGCCTCTGAAGTTAACCTTGACGGATTTCGAGGGTGCT
GATGAGATTTGCTTCAACGCCGGCGCGTCGTCGCAAGCTCTTTCCGTCTT
CCTGGAGCGCTGCGAGGCGAGGGGTATTGTAGCGGTGGCGACGCTGTGGG
CAGACTTGACCACGAGCTTCTCGCCCGTGACGGTGAAAAGCTGCCTTCCG
AGTCAGACCTGTAGGCGATGGAACTGTGCCTGTGGCCGACAGGCGCGTCG
TCGCAAGCTCTTTCCGTCTTCCTGGAGCGCTGCGAGGCGAGGGGTATTGT
AGCGGTGGCGACGCTGTGGGCAGACTTGACCACGAGCTTCTCGCCCGTGA
CGGTGAAAAGCTGCCTTCCGAGTCAGACCTGTAGGCGATGGAACTGTGCC
TGTGGCCGACAG
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