prot_H-paniculata_contig4006.10391.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4006.10391.1
Unique Nameprot_H-paniculata_contig4006.10391.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length102
Homology
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BLAST of mRNA_H-paniculata_contig4006.10391.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 4.360e-30
Identity = 53/78 (67.95%), Postives = 65/78 (83.33%), Query Frame = 0 
Query:   25 PAPLKLTLTDFEGADEICFNAGASSQALSVFLERCEARGIVAVATLWADLTTSFSPVTVKSCLPSQTCRRWNCACGRQ 102
            P P +  L DF GAD++CFNA ASS+ L++FLERCEA G+ +++ LWADLTTSFS +TVKSCLPSQ+C RWNCACGRQ
Sbjct:  418 PTPRRYKLDDFAGADDVCFNAAASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRQ 495
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BLAST of mRNA_H-paniculata_contig4006.10391.1 vs. uniprot
Match: A0A6H5J5W8_9PHAE (POLAc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5W8_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.010e-24
Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 0 
Query:   24 APAPLKLTLTDFEGADEICFNAG----------------------------ASSQALSVFLERCEARGIVAVATLWADLTTSFSPVTVKSCLPSQTCRRWNCACGRQ 102
            +P P +  L DF GAD++CFNA                             ASS+ L++FLERCE  G+ +++ LWADLTTSFS +TVKSCLPSQ+C RWNCACGRQ
Sbjct:  366 SPTPRRYKLDDFAGADDVCFNAASTVQTSTMGRLPPYPATSPAVILPRNSAASSEGLAIFLERCEVSGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRQ 472
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4006.10391.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK42_ECTSI4.360e-3067.95DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5J5W8_9PHAE2.010e-2448.60POLAc domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4006contigH-paniculata_contig4006:11691..13587 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4006.10391.1mRNA_H-paniculata_contig4006.10391.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4006 11691..13587 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4006.10391.1 ID=prot_H-paniculata_contig4006.10391.1|Name=mRNA_H-paniculata_contig4006.10391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
KASTPSPRGRGGSGPRAADCGPAAPAPLKLTLTDFEGADEICFNAGASSQ
ALSVFLERCEARGIVAVATLWADLTTSFSPVTVKSCLPSQTCRRWNCACG
RQ
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