mRNA_H-paniculata_contig40041.10386.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40041.10386.1
Unique NamemRNA_H-paniculata_contig40041.10386.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40041.10386.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 109 bits (272), Expect = 8.100e-23
Identity = 82/279 (29.39%), Postives = 137/279 (49.10%), Query Frame = 1
Query:   67 WNSDTGATDHMTSDETSFEDYTPALPGTICEIANGKFVPVEGWGRLMLRVSQPGGKSR-VAVLNRVAHVPELGRNLISARRATDTSGKSFIYSANKASLGLGEEESLIFNVSACLGLYEVEAVRSAAGTAKALTARRSSNRDVMDIHRLLAHASEQ----ITRDTAETGGVVLTGKWKACKGCSTAKAHRFAVPKTTDKRATRAAERLYVDLGGPMQVTSLGGSSYVMIIVDDYSRFQAVKFIKEKSDATAALQSYIAEYITPKRLKIGAIRTDNGGEF 888
            W+ D+GA+ HMT      +++      TI  +A+GK +P +G G ++  V    G  + V     V +VP +  NL+S  + T+  G    +     ++    +   +FN +   G+Y + A  S   T +A  AR S+       HR + H + +    ++R  A+ G   L  +   C  C T K  R     + +++++   + ++VDL GP+ V SLGGS Y++ +VDD+SR   V+F+K K +A   L  YI +       K+  +RTDNG EF
Sbjct:  289 WSVDSGASSHMTGCRQILKNFRNDDEKTIT-LADGKTIPTQGVGTVVFEVKNGNGNGKNVLTAKDVLYVPGMADNLLSVSKLTEN-GMDVRFVDEYCNVYFRNQ--FVFNATKEAGIYRLRAKISRPNTQQASGARVST---AELWHRRMGHLNRETLVRMSRTEADRGMPKLKQEDFECVPCITGKHSRNPFNPSQERQSSSLLDLVHVDLCGPLPVCSLGGSRYILAVVDDHSRRITVRFLKSKDEAAEILTEYINQVERQTGSKVKRVRTDNGTEF 560          
BLAST of mRNA_H-paniculata_contig40041.10386.1 vs. uniprot
Match: A0A6H5GTD8_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GTD8_9HEMI)

HSP 1 Score: 107 bits (266), Expect = 4.760e-22
Identity = 86/292 (29.45%), Postives = 145/292 (49.66%), Query Frame = 1
Query:   67 WNSDTGATDHMTSDETSFEDYTPALPGTICEIANGKFVPVEGWGRLMLRVSQPGGKSRVAVLNRVAHVPELGRNLISARRATDTSGKSFIYSANKASLGLGEEESLIFNVSACLGLYEVEAVRSAAGTAKALTARRSSNRDVMDIHRLLAHASEQITRDTA---ETGGVVLTGKWKA--CKGCSTAKAHRFAVPKTTDKRATRAAERLYVDLGGPMQVTSLGGSSYVMIIVDDYSRFQAVKFIKEKSDATAALQSYIAEYITPKRLKIGAIRTDNGGEF-DGDFHLKLDEHG 924
            W  D+G T HM ++   F     +   T   +AN     V G G + + VS   GK +V  L+   HVPEL  NL+S  + TD  G +  +++  A +     E+L+       GLY V+ V  ++ + + ++ +  S   + + H+   H +E   +      +  G+ L    K   C  C   K  +   PK +  R ++  + +++DL GPM+V S GG+ Y + ++DDYSR+  ++F+K+KSD  A  + +     T K  KI  I++DNG EF + +F   L+E+G
Sbjct:  267 WCIDSGCTSHMCNEAGRFSSLDTS-DHTRVNLANNDSTDVNGKGTVKMCVSV-NGKKQVMSLHNTLHVPELRSNLLSVGKITDQ-GLTVTFTSTSAEIKNRSGETLM-RAKRTNGLYLVDEVSGSSNSKEEISLKCESK--IENWHQRFGHLNESDLKSLQAGKKVKGIDLRSNEKLSDCTICLQGKMTQTPFPKKSS-RTSQKLDLIHMDLCGPMRVQSKGGAKYFLTLIDDYSRWCEIRFLKKKSDVFAEFKKFKNLVETQKGRKIKCIQSDNGKEFCNREFDRYLEENG 551          
BLAST of mRNA_H-paniculata_contig40041.10386.1 vs. uniprot
Match: A0A5N6L843_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6L843_9ASTR)

HSP 1 Score: 106 bits (265), Expect = 6.700e-22
Identity = 93/284 (32.75%), Postives = 138/284 (48.59%), Query Frame = 1
Query:   55 EKEHWNSDTGATDHMTSDETSFEDYTPALPGTICEIANGKFVPVEGWGRLMLRVSQPGGKSRVAVLNRVAHVPELGRNLISARRATDTSGKSFIYSANKASLG---LGEEESLIFNVSACLGLYEVEAVRSAAGTAKALTARRSSNRDVMDIHRLLAHASEQITRDTAE---TGGVVLTGKWKACKGCSTAKAHRFAVPKTTDKRATRAAERLYVDLGGPMQVTSLGGSSYVMIIVDDYSRFQAVKFIKEKSDATAALQSYIAEYITPKRLKIGAIRTDNGGEF 888
            E++ W  D+G ++HMT     F       P    ++ NGK + VE  G++ L V    GK RV  L+ V   PELG NL+S  +     G    +  +K ++     G+  S+I+  S  L   +V   RS   + KALT   +S  + +  H    H  E+  +  ++     G+    +W  C+GC   K  R   PK    RA++  + ++ DL GPMQV SLGGSSY  ++ DDYSR   V F+ +KS+A    + + A        KI  +RTD GGEF
Sbjct:  389 EQDVWFLDSGCSNHMTPKRDIFT-CMYNTPKHHVKLGNGKSIQVENKGKIKLEVE--AGKYRV--LDDVQFAPELGYNLLSVGQLMKA-GYRLSFDEDKCTITHKQTGDIMSVIWRSSNNLFPLDVSRPRSRLNS-KALTV--TSENESLLWHLRFGHLHEKGLKMLSQQEMVHGLPSIKQWPTCEGCMLGKQTRKPFPKDA-WRASQLLQLVHADLCGPMQVKSLGGSSYFFLLTDDYSRMSWVFFLSQKSEAFDKFKVFKARVEMESGKKIVNLRTDRGGEF 662          
BLAST of mRNA_H-paniculata_contig40041.10386.1 vs. uniprot
Match: A0A0A9YMV4_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YMV4_LYGHE)

HSP 1 Score: 106 bits (264), Expect = 9.000e-22
Identity = 90/287 (31.36%), Postives = 140/287 (48.78%), Query Frame = 1
Query:   37 NPAVSREKEHWNSDTGATDHMTSDETSFEDYTPALPGTICEIANGKFVPVEGWGRLMLRVSQPGGKSRVAVLNRVAHVPELGRNLISARRATDTSGKSFIYSANKASLGLGEEESLIFNVSACLGLYEVEAVRSAAGTAKALTARRSSNRDVMDIHRLLAHASEQITRDTAETGGVVLTGKWK--ACKGCSTAKAHRFAVPKTTDKRATRAAERLYVDLGGPMQVTSLGGSSYVMIIVDDYSRFQAVKFIKEKSDATAALQSYIA--EYITPKRLKIGAIRTDNGGE 885
            N  VS + +++  D+ A+DHMT   TSF +Y       I +I +G  +   G G L +  +  G +S  +VL  V HVP L  NL S  +A    G + I   N   L  G +   IF  +  +G   V   +    TA +  ++R S   +   H+ LAH +    ++      V      K  +C  C+  K HR   P ++ K ++   + ++VDL GPM+V S GGS Y ++  DDYS ++    + EKSD  A ++ ++A  E  T +R+K  AIR+D G E
Sbjct:  209 NSEVSDDSDYFYLDSAASDHMTPRNTSFSNYRACKK--IIKIGDGSVLEAVGVGDLSV-TTMVGNESVESVLMNVLHVPGLKMNLFSVPQAL-AKGHTLIGKENLCQLVKGGK---IFAEARLVGKVYVLKFKIVDATAASAVSKRDS---LFHWHQRLAHQNVAHVKEILNKLHVDFETDMKPFSCDACNIGKMHRLPFPSSSSK-SSHPCQLIHVDLCGPMEVASFGGSKYFLLFKDDYSHYRFCYMLSEKSDVPAVVKKFLALAENDTGRRVK--AIRSDQGTE 482          
BLAST of mRNA_H-paniculata_contig40041.10386.1 vs. uniprot
Match: A0A6A4XZ99_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZ99_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.000e-21
Identity = 74/280 (26.43%), Postives = 130/280 (46.43%), Query Frame = 1
Query:   67 WNSDTGATDHMTSDETSFEDYTPALPGTICEIANGKFVPVEGWGRLMLRVSQPGGKSRVAVLNRVAHVPELGRNLISARRATDTSGKSFIYSANKASLGLGEEESLIFNVSACLGLYEVEAVRSAAGTAKALTARRSSNRDVMDIHRLLAHASEQITRDTAETGGV------VLTGKWKACKGCSTAKAHRFAVPKTTDKRATRAAERLYVDLGGPMQVTSLGGSSYVMIIVDDYSRFQAVKFIKEKSDATAALQSYIAEYITPKRLKIGAIRTDNGGEF 888
            W  D+GAT H+ +++  F+       G + ++A+G  V ++G G ++ RV  P G  R   +N V +VP + +NL+S  +   +     ++      +     + ++       GLY +   R+   +  A+T+  S     +D+H  + HA   + R     G +      + +     C+GC   K  +   P   DKR     E L+ D+ GPM+  SLGGS Y+++IVD+ S       ++ KSD+   L+SYI +  T    ++  +R D   EF
Sbjct:  295 WAVDSGATHHICNNKAKFDTLNERDEGEL-KVADGAKVAIKGVGTIIERVVLPNGDEREIEINNVLYVPNMKKNLLSVPQINMSGKFQVVFDGASMHVARKGSQQVVATADLVDGLYWL---RTPLCSVNAVTSAPS-----VDLHARMGHAPIDVLRKMVNKGMIKDAKVPLKSSGPSVCRGCQQGKMVQKPFPSNRDKRRYDTFELLHFDICGPMEEASLGGSRYLLLIVDEASGCMKGFCLRAKSDSEECLKSYITKVQTQFGKRVKFVRHDGAREF 565          
BLAST of mRNA_H-paniculata_contig40041.10386.1 vs. uniprot
Match: A0A6H5G7E3_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5G7E3_9HEMI)

HSP 1 Score: 103 bits (256), Expect = 9.220e-21
Identity = 83/280 (29.64%), Postives = 138/280 (49.29%), Query Frame = 1
Query:   67 WNSDTGATDHMTSDETSFEDYTPALPGTICEIANGKFVPVEGWGRLMLRVSQPGGKSRVAVLNRVAHVPELGRNLISARRATDTSGKSFIYSANKASLGLGEEESLIFNVSACLGLYEVEAVRSAAGTAKALTARRSSNRDVMDIHRLLAHASEQITRDTAETGGVVLT------GKWKACKGCSTAKAHRFAVPKTTDKRATRAAERLYVDLGGPMQVTSLGGSSYVMIIVDDYSRFQAVKFIKEKSDATAALQSYIAEYITPKRLKIGAIRTDNGGEF 888
            W  D+G T HM ++   F     +   T   +AN     V G G + + VS   GK +V  L+   HVPEL  NL+S  + TD  G +  ++++ A +     E+L+       GLY V+ V  ++ + + ++ +  S   + + H+   H +E   + + + G  V         K   C  C   K  +   PK +  R ++  + +++DL GPMQV S GG+ Y + ++DDYSR+  ++F+K+KSD  A  + +     T K  KI  I++DNG EF
Sbjct:  120 WCIDSGCTSHMCNEAGRFSSVDTS-DHTRVNLANNDSTDVNGKGTVKMCVSV-NGKKQVMSLHNTLHVPELRSNLLSVGKITDQ-GLTVTFTSSSAEIKNRSGETLM-RAKRTNGLYLVDEVSGSSHSKEEISLKCESK--IENWHQRFGHLNESDLK-SLQAGKKVKAIDLRSNEKLSDCTICLQGKMTQTPFPKKSS-RTSQKLDLIHMDLCGPMQVQSKGGAKYFLTLIDDYSRWCEIRFVKKKSDVFAEFKKFKNLVETQKGRKIKYIQSDNGKEF 391          
BLAST of mRNA_H-paniculata_contig40041.10386.1 vs. uniprot
Match: A0A6H5JPK8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 9.940e-21
Identity = 59/147 (40.14%), Postives = 86/147 (58.50%), Query Frame = 1
Query:  487 DVMDIHRLLAHASEQITRDTAETGGVVLTGKWKACKGCSTAKAHRFAVPKTTDKRATRAAERLYVDLGGPMQVTSLGGSSYVMIIVDDYSRFQAVKFIKEKSDATAALQSYIAEYITPKRLKIGAIRTDNGGEFD-GDFHLKLDEHG 924
            D+   HR LAHA E + R+TA+ GG+VLTGK + C  C  AK  R +VP+    RA++   R+++DL GP+ V SLGG+ Y+ + VD  S +  V  ++ KSDA AA +  + +       +I   R DNG E+  GDF    D++G
Sbjct:  656 DINRFHRSLAHACEPLLRETAQQGGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKPLGRVHLDLRGPL-VPSLGGNLYLFLAVDSASLWNKVYGLRRKSDALAATKRLLVDVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNG 801          
BLAST of mRNA_H-paniculata_contig40041.10386.1 vs. uniprot
Match: A0A6A3VFT2_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VFT2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.930e-20
Identity = 69/281 (24.56%), Postives = 129/281 (45.91%), Query Frame = 1
Query:   67 WNSDTGATDHMTSDETSFEDYTPALPGTICEIANGKFVPVEGWGRLMLRVSQPGGKSRVAVLNRVAHVPELGRNLISARRATDTSGKSFIYSANKASLGLGEEESLIFNVSACLGLYEVEAVRSAAGTAKALTARRSSNRDVMDIHRLLAHASEQITRDTAETGGVVLTGKWKA-------CKGCSTAKAHRFAVPKTTDKRATRAAERLYVDLGGPMQVTSLGGSSYVMIIVDDYSRFQAVKFIKEKSDATAALQSYIAEYITPKRLKIGAIRTDNGGEF 888
            W  D+GAT H+ +D+  F        G +  +A+G    ++G G ++ RV  P G  R   +    +VP + +NL+S  +   +     ++   K  +     + ++   +   GLY ++  + +A  A        ++  ++D+H  + HA  ++ R   +   ++   K  +       C+GC   K  +   P   DKR     E L+ D+ GPM+  SLGGS Y+++IVD+ S       ++ KS++   +++YI +  T    K+  +R D   EF
Sbjct:  148 WAVDSGATHHICNDKAKFAHLIERNEGEL-SVADGNKAAIKGVGTIVERVVLPNGDEREIEIKNALYVPSMSKNLLSVPQINKSGKFQVVFDGTKMQIAHKGSKQVVATANLMDGLYWLQTPQRSANAA--------TSGKIVDLHARMGHAPVEVLRKMVDNH-MIKDAKAPSKSSGPSLCRGCQQGKMVQKPFPSNHDKRRYDTFELLHFDICGPMEENSLGGSKYLLLIVDEASGCMKGFCLRAKSESEDCIKTYIMKVQTQFGKKVKFVRHDGAREF 418          
BLAST of mRNA_H-paniculata_contig40041.10386.1 vs. uniprot
Match: A0A0J7NHJ8_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NHJ8_LASNI)

HSP 1 Score: 100 bits (250), Expect = 6.040e-20
Identity = 86/280 (30.71%), Postives = 129/280 (46.07%), Query Frame = 1
Query:   58 KEHWNSDTGATDHMTSDETSFEDYTPALPGTICEIANGKFVPVEGWGRLMLRVSQPGGKSRVAVLNRVAHVPELGRNLISARRATDTSGKSFIYSANKASLGLGEEESLIFNVSACLGLYEVEAVRSAAGTAKALTARRSSNRDVMDIHRLLAHASE---QITRDTAETGGVVLTGKWKACKGCSTAKAHRFAVPKTTDKRATRAAERLYVDLGGPMQVTSLGGSSYVMIIVDDYSRFQAVKFIKEKSDATAALQSYIAEYITPKRLKIGAIRTDNGGEF 888
            K+ W  D+GA+ HMT +   F     A    I  +AN   + V+G G + +++S  G   ++ V + V +VP L  NL+S    T   G +  + A    + L     ++   +   G Y ++  +  A + K               HR L H      ++ RD    G    +   + C  C   K HR   P + +KR  +  E L++DL GPM+ TSLGGS Y M IVDD+SR   + F+++KS A    + +  E       KI AIRTDNG EF
Sbjct:  262 KDDWFVDSGASAHMTGNREYFTQIHKAHLSHII-VANDVSLSVQGTGDVKVKISLHGTIDQITVKD-VLYVPGLSPNLLSVSEMT-AKGLTLKFEAETCQI-LDSSNKIMATATQINGAYRLDRPQVTAYSCK------EEEESAELWHRRLGHLGRTGMKLLRDKHAKGLRFESPLREPCVICCKGKQHRQPHP-SVNKRTKQVLELLHMDLCGPMENTSLGGSRYFMTIVDDHSRKIFIYFLEKKSQALECFEDFKKEAENQMERKIKAIRTDNGKEF 530          
BLAST of mRNA_H-paniculata_contig40041.10386.1 vs. uniprot
Match: A0A2A4JFW7_HELVI (Uncharacterized protein (Fragment) n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4JFW7_HELVI)

HSP 1 Score: 100 bits (248), Expect = 7.260e-20
Identity = 75/279 (26.88%), Postives = 133/279 (47.67%), Query Frame = 1
Query:   55 EKEHWNSDTGATDHMTSDETSFEDYTPALPGTICEIANGKFVPVEGWGRLMLRVSQPGGKSRV-AVLNRVAHVPELGRNLISARRATDTSGKSFIYSANKASLGLGEEESLIFNVSACLGLYEVEAVRSAAGTAKALTARRSSNRDVMDIHRLLAHASEQITRDTAETGGVVLTGKWKACKGCSTAKAHRFAVPKTTDKRATRAAERLYVDLGGPMQVTSLGGSSYVMIIVDDYSRFQAVKFIKEKSDATAALQSYIAEYITPKRLKIGAIRTDNGGEF 888
            ++  W  D+GA+ HM  D   F  Y  +   T+  I NG+ +   G+G++ L V    G+  V   ++ V  VPEL  NL S + AT+   + ++ + N        +++ +  V+   G      VR     A A   +      + + H  LAH + Q  R   +   + +      C+GC   K HR      ++ + ++  E ++ D  GPM+V S+GGS Y +I+ DDYS +++V F+K K +    +++++ +     + K+   R+DNG EF
Sbjct:  243 QQSQWLVDSGASQHMCRDRNLFTTYLSSDNKTVI-IGNGEEISALGFGQVALEVFN--GREWVNTTIDNVLFVPELKTNLFSVKCATE---RGYVVNNNVCKF---YKKNTVCAVACRNGDMYYMDVRYKCEIANATEVKSG----LKEWHEKLAHQNLQYVRTVLKNNNIEVKDADFKCEGCLEGKIHRLPFS-ASENKTSKTCELIHADTCGPMEVPSVGGSRYFVILKDDYSNYRSVYFVKGKDEVRKCIENFLYKAENVTKNKVQCFRSDNGLEF 507          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40041.10386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A293MM55_ORNER8.100e-2329.39Reverse transcriptase, gag, polyprotein (Fragment)... [more]
A0A6H5GTD8_9HEMI4.760e-2229.45Integrase catalytic domain-containing protein (Fra... [more]
A0A5N6L843_9ASTR6.700e-2232.75Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A0A9YMV4_LYGHE9.000e-2231.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A4XZ99_9STRA9.000e-2126.43Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5G7E3_9HEMI9.220e-2129.64Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JPK8_9PHAE9.940e-2140.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3VFT2_9STRA3.930e-2024.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A0J7NHJ8_LASNI6.040e-2030.71Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A2A4JFW7_HELVI7.260e-2026.88Uncharacterized protein (Fragment) n=1 Tax=Helioth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40041contigH-paniculata_contig40041:991..1914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score112.5
Seed ortholog evalue3.6e-22
Seed eggNOG ortholog6334.EFV48956
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size924
Cds size924
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930227.1812716-CDS-H-paniculata_contig40041:990..19141622930227.1812716-CDS-H-paniculata_contig40041:990..1914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40041 991..1914 +
1691481199.7279882-CDS-H-paniculata_contig40041:990..19141691481199.7279882-CDS-H-paniculata_contig40041:990..1914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40041 991..1914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40041.10386.1prot_H-paniculata_contig40041.10386.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40041 991..1914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40041.10386.1

>prot_H-paniculata_contig40041.10386.1 ID=prot_H-paniculata_contig40041.10386.1|Name=mRNA_H-paniculata_contig40041.10386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=308bp
MTAVTDDRKTTDNPAVSREKEHWNSDTGATDHMTSDETSFEDYTPALPGT
ICEIANGKFVPVEGWGRLMLRVSQPGGKSRVAVLNRVAHVPELGRNLISA
RRATDTSGKSFIYSANKASLGLGEEESLIFNVSACLGLYEVEAVRSAAGT
AKALTARRSSNRDVMDIHRLLAHASEQITRDTAETGGVVLTGKWKACKGC
STAKAHRFAVPKTTDKRATRAAERLYVDLGGPMQVTSLGGSSYVMIIVDD
YSRFQAVKFIKEKSDATAALQSYIAEYITPKRLKIGAIRTDNGGEFDGDF
HLKLDEHG
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mRNA from alignment at H-paniculata_contig40041:991..1914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40041.10386.1 ID=mRNA_H-paniculata_contig40041.10386.1|Name=mRNA_H-paniculata_contig40041.10386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=924bp|location=Sequence derived from alignment at H-paniculata_contig40041:991..1914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGCGGTAACTGACGATCGCAAAACAACAGACAACCCTGCCGTGTC CAGAGAGAAGGAACACTGGAATTCAGACACCGGCGCGACAGACCACATGA CGTCGGATGAGACTTCGTTCGAGGACTACACTCCAGCGCTCCCGGGGACC ATATGTGAAATCGCTAACGGGAAATTCGTGCCTGTAGAGGGGTGGGGACG CCTTATGCTTCGAGTAAGTCAACCGGGGGGAAAATCGCGGGTAGCAGTGT TAAACAGGGTTGCCCACGTACCCGAGCTCGGGCGCAATTTAATCTCCGCA CGCCGAGCAACAGATACATCGGGAAAATCGTTTATATACAGTGCCAACAA AGCAAGCCTCGGGCTAGGGGAGGAGGAGAGCCTTATTTTCAACGTGTCAG CATGTTTAGGACTGTATGAGGTGGAGGCCGTTCGGAGTGCTGCGGGAACA GCAAAAGCTCTGACGGCGAGAAGATCTTCGAATCGCGACGTCATGGACAT ACACCGACTCCTTGCGCATGCGAGCGAGCAGATCACAAGGGATACGGCGG AAACGGGCGGCGTCGTGCTGACGGGTAAGTGGAAGGCCTGCAAAGGATGC TCCACTGCAAAGGCTCACCGATTCGCCGTGCCAAAAACGACCGACAAGCG AGCCACACGGGCGGCGGAGCGCCTTTACGTTGACCTGGGCGGACCCATGC AAGTAACCAGCTTGGGTGGTAGCTCGTATGTGATGATCATCGTTGACGAC TACTCACGGTTCCAGGCTGTCAAGTTCATCAAAGAGAAGAGCGATGCCAC TGCAGCTCTCCAGAGCTACATCGCCGAATACATCACGCCGAAGCGACTCA AGATTGGCGCCATTCGTACGGACAACGGCGGGGAGTTCGATGGCGATTTT CACCTCAAGCTGGACGAGCACGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig40041:991..1914+

>mRNA_H-paniculata_contig40041.10386.1 ID=mRNA_H-paniculata_contig40041.10386.1|Name=mRNA_H-paniculata_contig40041.10386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1848bp|location=Sequence derived from alignment at H-paniculata_contig40041:991..1914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGCGGTAACTGACGATCGCAAAACAACAGACAACCCTGCCGTGTC
CAGAGAGAAGGAACACTGGAATTCAGACACCGGCGCGACAGACCACATGA
CGTCGGATGAGACTTCGTTCGAGGACTACACTCCAGCGCTCCCGGGGACC
ATATGTGAAATCGCTAACGGGAAATTCGTGCCTGTAGAGGGGTGGGGACG
CCTTATGCTTCGAGTAAGTCAACCGGGGGGAAAATCGCGGGTAGCAGTGT
TAAACAGGGTTGCCCACGTACCCGAGCTCGGGCGCAATTTAATCTCCGCA
CGCCGAGCAACAGATACATCGGGAAAATCGTTTATATACAGTGCCAACAA
AGCAAGCCTCGGGCTAGGGGAGGAGGAGAGCCTTATTTTCAACGTGTCAG
CATGTTTAGGACTGTATGAGGTGGAGGCCGTTCGGAGTGCTGCGGGAACA
GCAAAAGCTCTGACGGCGAGAAGATCTTCGAATCGCGACGTCATGGACAT
ACACCGACTCCTTGCGCATGCGAGCGAGCAGATCACAAGGGATACGGCGG
AAACGGGCGGCGTCGTGCTGACGGGTAAGTGGAAGGCCTGCAAAGGATGC
TCCACTGCAAAGGCTCACCGATTCGCCGTGCCAAAAACGACCGACAAGCG
AGCCACACGGGCGGCGGAGCGCCTTTACGTTGACCTGGGCGGACCCATGC
AAGTAACCAGCTTGGGTGGTAGCTCGTATGTGATGATCATCGTTGACGAC
TACTCACGGTTCCAGGCTGTCAAGTTCATCAAAGAGAAGAGCGATGCCAC
TGCAGCTCTCCAGAGCTACATCGCCGAATACATCACGCCGAAGCGACTCA
AGATTGGCGCCATTCGTACGGACAACGGCGGGGAGTTCGATGGCGATTTT
CACCTCAAGCTGGACGAGCACGGCATGACGGCGGTAACTGACGATCGCAA
AACAACAGACAACCCTGCCGTGTCCAGAGAGAAGGAACACTGGAATTCAG
ACACCGGCGCGACAGACCACATGACGTCGGATGAGACTTCGTTCGAGGAC
TACACTCCAGCGCTCCCGGGGACCATATGTGAAATCGCTAACGGGAAATT
CGTGCCTGTAGAGGGGTGGGGACGCCTTATGCTTCGAGTAAGTCAACCGG
GGGGAAAATCGCGGGTAGCAGTGTTAAACAGGGTTGCCCACGTACCCGAG
CTCGGGCGCAATTTAATCTCCGCACGCCGAGCAACAGATACATCGGGAAA
ATCGTTTATATACAGTGCCAACAAAGCAAGCCTCGGGCTAGGGGAGGAGG
AGAGCCTTATTTTCAACGTGTCAGCATGTTTAGGACTGTATGAGGTGGAG
GCCGTTCGGAGTGCTGCGGGAACAGCAAAAGCTCTGACGGCGAGAAGATC
TTCGAATCGCGACGTCATGGACATACACCGACTCCTTGCGCATGCGAGCG
AGCAGATCACAAGGGATACGGCGGAAACGGGCGGCGTCGTGCTGACGGGT
AAGTGGAAGGCCTGCAAAGGATGCTCCACTGCAAAGGCTCACCGATTCGC
CGTGCCAAAAACGACCGACAAGCGAGCCACACGGGCGGCGGAGCGCCTTT
ACGTTGACCTGGGCGGACCCATGCAAGTAACCAGCTTGGGTGGTAGCTCG
TATGTGATGATCATCGTTGACGACTACTCACGGTTCCAGGCTGTCAAGTT
CATCAAAGAGAAGAGCGATGCCACTGCAGCTCTCCAGAGCTACATCGCCG
AATACATCACGCCGAAGCGACTCAAGATTGGCGCCATTCGTACGGACAAC
GGCGGGGAGTTCGATGGCGATTTTCACCTCAAGCTGGACGAGCACGGC
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