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Homology
BLAST of mRNA_H-paniculata_contig4003.10380.1 vs. uniprot
Match: A0A6H5KXK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK4_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 4.290e-14 Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 3
Query: 255 PPYQIQQLYREGRFDSCHDSWSDLKICIKANLAWTTEEAHQIMQQVSYKQRQGDKNPSMAIWERKTKPSF 464
P Q YREGR+ SC D W D K I A + ++A ++++ +SY+QRQGD NPS+AIWERK +PSF
Sbjct: 23 PVSQATHYYREGRYTSCSDCWKDFKTSIAAKMCNEEQDALELLKGLSYRQRQGDLNPSLAIWERKEEPSF 92
BLAST of mRNA_H-paniculata_contig4003.10380.1 vs. uniprot
Match: A0A1E7FHM2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHM2_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 6.420e-6 Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = 3
Query: 261 YQIQQLYREGRFDSCHDSWSDLKICIKANLAWTTEEAHQIMQQVSYKQRQGDKNPSMAIWERKTKPSF 464
YQI LYR GRFDSC W D+K IK ++A +++ +K+R + AIWE K +P +
Sbjct: 69 YQIDHLYRLGRFDSCKKQWGDVKTAIKIKFTRDPKKAQELLDSTYFKKRTTISPTAGAIWELKERPGW 136
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1642 |
| Cds size | 333 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4003.10380.1 >prot_H-paniculata_contig4003.10380.1 ID=prot_H-paniculata_contig4003.10380.1|Name=mRNA_H-paniculata_contig4003.10380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MHKKENEKASSNSLKERCCTSLSVCTQKVRGPDLRTSEDPPYQIQQLYRE GRFDSCHDSWSDLKICIKANLAWTTEEAHQIMQQVSYKQRQGDKNPSMAI WERKTKPSFY* back to topmRNA from alignment at H-paniculata_contig4003:7597..14213+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4003.10380.1 ID=mRNA_H-paniculata_contig4003.10380.1|Name=mRNA_H-paniculata_contig4003.10380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6617bp|location=Sequence derived from alignment at H-paniculata_contig4003:7597..14213+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TTGAGAATCGATACCCCCGTTCAAAAAGGACCTTAGAAGCGACAGTACGG
TGCTTGCCTAGCGGTGCCGCATGCTATAATGACTTGGTCACGCAACCCGG
AAGTGGATGTCTGGAAACATATCGACTTCGCCTTTGTATGCACAAGTGAG
TTTGTGTATGTGGCTTTTGTTTAAGACGAACGGCGGTGCGGTTGTCGGTT
CTCATCAAAACTCTGTTGTCAGTAGTGCAACACGGCGCCTTCTGCGCACG
AAGCTCCCACCAGCAGGTTTTACGAAATCTCATTAGCCATGAGACCACGC
TAGGGGTATTTTAACAATATGAAACGATCATCATGGAATTTATCTGGGGA
TGTCGGGATGACACCAACATCTGCAGCGTTGTTGCATACTACTATCCAGC
ACACACATCACAGCTTGCACTTCTAGCAGCAGTTTTTTACGGGTAGCCGT
TGACGAGGAGACGTCCATACCGCTTGGGTGACAGACAAGATCGTACAAAA
CAAGCGATGACACTATTGTCATAATGTCAATATACAGACAGCGTTGGAGA
CCGCACGTATATGCCAACAGCAGTACAGGTGAAGATCCCTCATTGAAATT
GGATTGTTGCCTCAACGTTGCTGACAGTGAATAACACCCCCCTCCCTCCC
ACCCCCGAGTATTAACTTATCACATTTGACTTCGAGAACAGCTCGGTGCT
GCTGCTATGCATTGTGACACGGAAATATGTCATTGGAAATGTCTCGTTAA
GATCTGGCAATCGGTAAGCTCTTTTGCCAATCTTCCCTCTTCTTGCTCCT
CGAAGAAAGGAGAATGAAAAAGCCAGTTCGAATAGTCTCAAGGAGAGGTG
TTGTACATCGTTATCTGTGTGCACGCAGAAGGTTCGCGGTCCCGACTTGC
GCACTTCGGAAGGTGAGTAGCATTGTCGCCCGCGTTATATTTCATTTAAC
ATGGCGCACCTTACTCGTCCTGTCGTACAGATTATAGTACCAATACTTTG
CCCACGGAGCTGTTGCGGTTGAGGACCTAGGAAACTCGCCTCTTTCGGTG
ATATCTTTGAGGGGCATCTCCGCCTTACTCTGAACAGTTTTTTGTCGGTC
CACCCCTAGGAGCCAGATTTATTTTGGCTGAAACTGATGAAATATCGAAA
TAGGTTTTTCAGAGCGCAATAAGGAACGATTAAAAGAAGCATGAAGAGCA
AAACCCCTAAAAGTATCGAAAGTCGCAAATAAAAAAAGGGGTCAAGGAGG
GGGCTAAAGCGGGGGGGAGAGTAGGCCGCAATAACTATGACTGTAGTATA
CCTATGGAGGAAGACTAGTCATCCGCGATCGGAGATACTCATGATGCTGC
AGAGGTCGCCGTAAGCCCCGGAGATCCACTTCGGATAAAAGCGCAGGGGG
AAGGGTGCGCGGGGAATCTGGCCAGCCTTCTCGTACAAGCTGGGCCGAGC
GCGTCAGGCAGCCAAGAAAGTCATATGCTTGCGAGGAGAAGTGGCAGTCA
GAACACTATCGTGTGTGTGTTACGTCAGGCGTGTGCAGTAGGGACCTTTC
CGTTAGATGTCACGCACATGCACTGGAGAATGTAATATAGCCATTCAGGA
TTTCTTTTTTTCTGACCCATTGGGTATAGTTTCTCCTGGCTGCAAATACC
AATCTGCAGTGGAGTGCAATTCGGCCTCAAATAAGGCAGACGGCACAACA
AGATATGTGTTCACAATTCGCAACAACGGCCTGAAACAATTACCAATTTC
TAAGTGCAACTTCGAGCAAAGCAGGTGCTCCACTCGTAGCCAAATTTCAC
CACCTAAACAAGTTTGTGGTTTTAGTAGCTGAACTAACAACGTACATGTG
TGCATGCAGCCAAGATTGCGTAGTGCGGCAGTGAAAAATACACACTGAGC
GAGCCGTACTTTTGGCCGAAAGTCCGAACTGAGAGGGGGAGTGGGGGTCG
AAGATTTTAATCCTGAAGGCCCCTTGGGCGCCAGCTTCGATTCAACGATC
AAGTATTTCTTAGGAAACCCCCAATTTCAGCCTTACATGAAAGATGGGTG
TATCGAATGAACCATGCCCAGTGATTATCGCCCATGATTGCGAGAGTCGG
TGGTGGGCGTGGCCACCATCATGGGAGCGCCGCACCAACAATCCCCACGC
TCTAAGGCAGCATCTTCGGGTGCTTTGTATTACTTGTATGTGCACCCCCC
CCTTTTTCTCAACACCGCAGTACCGACCAGTTTGTGGCAGTGGAGACAGT
ACAGGTAGACTCGCCCAACACGACGTCTATGCTGTAAAACCGGTAGCATT
TAGGGTGGATTGCTCCTAGACTAATACTCGCAAGGCGTGCTGGTCTGCCT
CGTCTATTCAACGGGGGGCTCCTTTGTCAAAGAGGCGCAAGTAGCTGAAA
GAAAAGATTGATCGGTATAAATAGGCGAGGCTCACACAAGAAATGAGAGA
TGGAACACACAGCTTTTTATTTTATGTAGGCCTTGAACATATGTATAAAC
GAGACCTAGATGACAAAAACATAGATATCAGAAGCAAACCGGTTATACGG
ACCTTGCTGCCCTATCCGACTCAGACCCAGGTTCTGGTTCTGGGTACGAT
GACGAGGGCTTCACTATTATAGATGGGCATAGGAGGTGTGGGTCACAAGC
AACCACCGCTTCCCCACCCCTGTATATCCTGTCTCCACCGCAGCACGCCC
CTCAAACCCTTTGCACCCCCATCGCAGCAGTAGTCGCGCCACCGCTTCCC
ATGTACGCCGGCCTATCCGGCGCGTAAATGCTACACGTCGCACAAAAGTG
ACCCCAACCGTTGTTGCCCCCACCCCAGCCGCTCTGCTCGCAGCAACCTT
TTCATAATCGCACACCTAAGATGACAGCACCACCCTCGCCCCGCATGGAT
GTCCACCATGTGGGTGGGCAGGCTACCGGTATGGTATAAATTCATCTGGT
AGAAACTGCCCCAAGACTCTCTCTTCCTACACAAATTATCGTAGAATCCG
GAGTCGCGCTGGTCAACCTCGGCGGGCTAATTTGTTTCAGAGACGTGAGC
AGCTAAAGGAAAATGTTAATTAGTACATGGGCAGATTTCACAAAGGATAT
GAAAGATGGATCGTACAGACAAAGACAGCTTTTCATCATATGTAGCTCGT
TGAACACATACATAAATCAGACCTAGATCACAAAGAACATGAGCATCACT
AACAGAAACAGATAGTTATCAGCTCCCACGCGAAGCCCTGGATAACCCAT
ACGATGTAAATACGTAACGTCTACACTGCTCGTCGACTTCTTGACTGAAC
CAAGGGCGTCGTTGATTAAATCTCAGGGGTGACACTTTGGAGAGTGGGGT
AGGGGAGGTATTCCTTGAAGTCTCCTAGCTATACCAATACTGGTCATATC
TCAATTCTGACGGGAACCATTCAGTCATCTTCCGCGTCAAGATGAGTCCA
GATATTCGTTAACCCATAGTATGCCCGGCCTGTAGGTAGTAACAGTTATA
TCACTAAAGGGCCCCTGTCCTGGATACACCCAGAGATTTTAACCTATGGC
ACAATTACTCCAATTCTCCTGCTTGATTATGATATTATGGTAGTCCCGCC
ACACACCTCTCTAAGTTTCATCACACTGGCACAGTGCGTTTGATATTGGT
ACCTACCCCTCCTGAAATTCAAGGTTTTCGAAGAACTCCATTACACGCCT
CGGGTAAGTTTGAAGCCTGAGAAATTGTGGTTCTTGAATGTGTCCGCCCC
GAGATTTCAACATTTCAACGTTTCCACTACAAGAACGGCTGCTAGGAAAT
AATCTCAAGGTTCCCACAAGCCGTAACAATTCCTTTTTATACATCGCCGG
CGTCCCGGCAGTACCGCCCACGCACTCGTCCATAGCATGTACGAGTGGAA
CGTGTGGGTTATTCACCTTTCCGATCTATTTTCACCAGGGAATATCCAGA
ATGTATTGAAGTTGTTTGTACTCATAGCCCACGCATCTGGTCTCCTGCTC
ACCAGTAGAAACACCCTGTCGGATCTCAAGGCTCATTGTCTACTTTTGTC
GCCTTCGCTGTTCTTCGTGGGTGGGGGTCGCGGTGGGACGGTGTTTGTGC
GCAGACCCGCCGTACCAAATCCAGCAGCTCTACCGGGAGGGCAGGTTCGA
CTCTTGCCACGACAGTTGGAGCGACTTGAAAATATGTATCAAGGCCAACC
TCGCGTGGACGACAGAAGAAGCACATGTACGTTTCGTTTCATGTTTGACC
GCCCCGCTTCACTCTGCCCCGCCCTCGTCCGAGTGAACCCATGTGGAATT
GTTGCGACGTATTGCGGTGCATGATAGTACTCGCGGTATGGAACGGCGCG
ATACAGACACGGGTGCGGCGCCTAACGCCCTACTCAAATAGTTCCAGGCA
CTAGCGTACCAACTTGATATATTTGGGAATCCTGGGGCATCGAACTTTAG
AACCTGAGAAGGCTATATCGCTATAGGCGTAAGACGTGCTCTAGTTTGTT
CCTTTCCCAATGGCTGCCCTCACGCCAACTGCTTGGTGTTGTTTCAGGCA
CCTGTTGGCTTTCCCCGGTATTGTCCTTGTTTTTTGCAACCGTGAAGTAG
GTAATGATGGCTTGTTGCGCTACAACTAAACAAACTAGGCTATGGTCTTC
GAAAAGTAACAGTTTTTTACTTGAAAAGGTATGTCGAATGTTTTCCAGGA
GAAACTGCTGCATTTCCAGCTATTCCGCATGGGTACGGCTGTTGTTTTCT
AGCATGCAGGTAGCCGCGGTAGCCGAATTATCCCCGCTTATCTTCAGGAA
ATACTACAGTGATTTTCTGCGCATACTCCTGTGTGGAGGGTGTCCATTTG
AACCTTGCAGGCGTATTTCAGATCGGCGGTGTAACGGGGTACTTGCCCCA
CAATCTCCACAATAAAACATCGCTCCGCCGTAAGTAATTGGCTCCTAGGG
AACGAAGATCGGGAAACTATAACTGCTATTTGAACACCGTGCTATAAATT
CTCATAGTTGAAGGATAGGCTAAACCTACAAGCGGGGAATGGACGAATTT
GTAGGTTGTTTTAATCAGGTATACTGTCATGTTCGCCGTCGTTATCTGGT
GTATTGATCATGCCTCACAGTTATTGATCCTCTTGCCAGCACTACGAATG
TCCGTTGGTATCTGACCCACTTCCTCACCCTCATTCCCCACCGCCGCCGC
CGCCCCGACCCGCTGCGTCCTCTCTTCGGCGACCCGAATCCCGCCCATTT
CTTGATATTTTTCATTCGCTGCGTGTGTGCTTGTTGGTGCGCCGTTCTTT
CATGTGTTTTGGGTTGCAACTGTTCTTGCTGTTGGTGCTGAGTGAGCAGC
AAATCATGCAGCAGGTTTCCTATAAGCAGCGGCAGGGGGACAAAAATCCA
TCGATGGCGATATGGGAGAGAAAAACGAAACCGTCGTTTTATTGAACGAT
GGGGAGCAGACGGACATAACTATTTCAATAGTAAAAGTATTGCACACGCA
CTAACAGCCAGCAGCGAGTGGTGAAGTAAACCCGAATATTGATAAGTAGT
GTAAGAAGCGGACGCCAGGAAGAACGGTTTCGTTTGGTTGTTTTGGAGAT
ATCAATGGCATTTTATTATTCCTTCCCTTTTTTTTTATCGTCTTTCCTTT
GTCGTTGCGCGCACCACTTAGCAGTGTGTACTAGACGTTTAGGATGGCTT
TTTAGGATAAAACGTGTTTGCACGATTTTCCCGAATTACGTGCCGAATCA
AGTATGACTTGAACAGAGTCTGTGAAAGTACATGGCATCAGCGTTCGTTC
GGTGTTGGTGTTTTTCATGTTGGGTCCCCTGCTCCCGAGATCTGGGCATT
CAAGGCAACAATCTACTAACCGTTCACGGTTCCCCTTGATTTTGCTGTTT
TGCTCTATGTCTTGAGATGCCTTGATCCCAATCTTATCGAAAGTAGACGC
AATCTATCCTTATAGAAAAAGTAATAGTTCAAACTCATCAGATTTTAGGG
ATGGGGTACATTGCGCAAATTACAACTGAAAACTGTTTTCATTCGAAAGA
AAAAAGTCATCCTACACTTCTAGTACACCCTGTTAGTTGCTGTTGTACTG
TCTGTAGCGTCCAACAGTTTGGGAAGAGAAAGAAGGACGAGCGAGTGGTT
GGGTTTATTTCTGATGATTAGCTTACGGTTTTGCACCTTGACCTACTGTT
TCAAGTACATCGTTTTTTCCCGGACTGTGTATTGTCGGGCAAAATATTTA
AGAATTGCGTTGGATTCTTCGGCGAAACGGGTCGCAGCACCACCAGCCAG
AGAGTAATCATGCCACAGCTTCCCGGCCACAATACGTATAGAAGGGGCAT
TTCAAGAGCGAATTAAAGGAGGAGCGGACGAACGAGCTCATATTGCAGTA
CCTCGTGAAGGATCTCGGAGGCTTCGATATGGTGGGATCCCCCAACTTCA
GGCACATGATTTGCGGCCTGACCAGTAAGTCCCACTTGTTGCTGCCTGGA
GCGAAAACATAGTGAAGATGGTCAAAGATAAAGTGACCGCCCTGCGGAAC
GACAAAAAGGCGGGGGTTTCCCGACGACCTTTGTCTTTCACTGGCGTTGA
GTGGGATTCGCGGAGTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig4003:7597..14213+ >mRNA_H-paniculata_contig4003.10380.1 ID=mRNA_H-paniculata_contig4003.10380.1|Name=mRNA_H-paniculata_contig4003.10380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig4003:7597..14213+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCACAAATGCACAAAAAGGAGAATGAAAAAGCCAGTTCGAATAGTCTC AAGGAGAGGTGTTGTACATCGTTATCTGTGTGCACGCAGAAGGTTCGCGG TCCCGACTTGCGCACTTCGGAAGAAAGGAGAATGAAAAAGCCAGTTCGAA TAGTCTCAAGGAGAGGTGTTGTACATCGTTATCTGTGTGCACGCAGAAGG TTCGCGGTCCCGACTTGCGCACTTCGGAAGACCCGCCGTACCAAATCCAG CAGCTCTACCGGGAGGGCAGGTTCGACTCTTGCCACGACAGTTGGAGCGA CTTGAAAATATGTATCAAGGCCAACCTCGCGTGGACGACAGAAGAAGCAC ATACCCGCCGTACCAAATCCAGCAGCTCTACCGGGAGGGCAGGTTCGACT CTTGCCACGACAGTTGGAGCGACTTGAAAATATGTATCAAGGCCAACCTC GCGTGGACGACAGAAGAAGCACATCAAATCATGCAGCAGGTTTCCTATAA GCAGCGGCAGGGGGACAAAAATCCATCGATGGCGATATGGGAGAGAAAAA CGAAACCGTCGTTTTATTGACAAATCATGCAGCAGGTTTCCTATAAGCAG CGGCAGGGGGACAAAAATCCATCGATGGCGATATGGGAGAGAAAAACGAA ACCGTCGTTTTATTGA back to top
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