mRNA_H-paniculata_contig4.10363.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4.10363.1
Unique NamemRNA_H-paniculata_contig4.10363.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4.10363.1 vs. uniprot
Match: D7FLK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK0_ECTSI)

HSP 1 Score: 292 bits (748), Expect = 5.850e-88
Identity = 144/202 (71.29%), Postives = 163/202 (80.69%), Query Frame = 1
Query:    1 TDHRFPFLYFDDQGLSRISPVSGPAEAAGTRVTFYGRGFVNTTLLACRFGYAPPVPATFISPNELSCESPPLVIPTVTGTRGAERTSGLDWSALSEIRQRDVDPLTGSRRLFPRAHYFPLFLQRAVGAEVTCNGQDYTNRGITYLYQADASVQNISLAGGLDPAELGLFVTGENFVNSTHLACRVGGSTSSGTFLSSRLALC 606
            T  RFPFLYFDDQ L+RI+PVSGPAEAAGT VTFYGRGFVNTT LACRFG APPVPA F++PNEL CESPPLV  +       +  SGL WS+LSEI QR+ +PLTGSR+LFP +HY PLF QRAVG EVTCNGQDYT+ G T+LYQADASV NISLA GLDP    LF+TGENFVNST L+CR+GGS + GTFLS+ + LC
Sbjct: 11043 TGRRFPFLYFDDQALARITPVSGPAEAAGTAVTFYGRGFVNTTKLACRFGLAPPVPAKFVNPNELFCESPPLV--SAVNQDSDDGGSGLRWSSLSEIWQREYEPLTGSRQLFPGSHYHPLFPQRAVGVEVTCNGQDYTDSGATFLYQADASVHNISLAAGLDPGGSALFITGENFVNSTSLSCRIGGSNTPGTFLSASIVLC 11242          
BLAST of mRNA_H-paniculata_contig4.10363.1 vs. uniprot
Match: A0A6H5JBB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB5_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 3.890e-85
Identity = 144/214 (67.29%), Postives = 162/214 (75.70%), Query Frame = 1
Query:    1 TDHRFPFLYFDDQG------------LSRISPVSGPAEAAGTRVTFYGRGFVNTTLLACRFGYAPPVPATFISPNELSCESPPLVIPTVTGTRGAERTSGLDWSALSEIRQRDVDPLTGSRRLFPRAHYFPLFLQRAVGAEVTCNGQDYTNRGITYLYQADASVQNISLAGGLDPAELGLFVTGENFVNSTHLACRVGGSTSSGTFLSSRLALC 606
            T  RFPFLYFDDQ             L+RI+PVSGPAEAAGT VTFYGRGFVNTT LACRFG  PPVPA F++PNEL CESPPLV  +       +  SGL WS+LSEI QR+ DPLTGSR+LFP AHY PLF QRAVG E+TCNGQDYT+ G T+LYQADASV NISLA GLDP    LF+TGENFVNST L+CR+GGS + GTFLS+ + LC
Sbjct: 10720 TGRRFPFLYFDDQASRWGWHTISNQALARITPVSGPAEAAGTAVTFYGRGFVNTTKLACRFGLGPPVPAKFVNPNELFCESPPLV--SAVNQDSDDGGSGLRWSSLSEIWQREYDPLTGSRQLFPGAHYHPLFPQRAVGVEITCNGQDYTDSGTTFLYQADASVHNISLAAGLDPGGSALFITGENFVNSTSLSCRIGGSNTPGTFLSASIVLC 10931          
BLAST of mRNA_H-paniculata_contig4.10363.1 vs. uniprot
Match: A0A836CCN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCN3_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.070e-46
Identity = 96/199 (48.24%), Postives = 122/199 (61.31%), Query Frame = 1
Query:   13 FPFLYFDDQGLSRISPVSGPAEAAGTRVTFYGRGFVNTTLLACRFGYAPPVPATFISPNELSCESPPLVIPTVTGTRGAERTSGLDWSALSEIRQRDVDPLTGSRRLFPRAHYFPLFLQRAVGAEVTCNGQDYTNRGITYLYQADASVQNISLAGGLDPAELGLFVTGENFVNSTHLACRVGGSTSS-GTFLSSRLALC 606
            FPF Y+    +S I+PVSGPA A G+ V  YG  FVNTTLL+CRFG A  VPA F+S  E+ C  P L              + L+WSAL + +QRD  PLTGSR+LF  +H +PL+ QR VG EVT NGQDYT+ GI YLYQAD  +  +  A    P    +++TG  FVNST L C+VG S  +   F+++ L LC
Sbjct: 9373 FPFFYYAATVMSYIAPVSGPASAIGSEVIVYGNSFVNTTLLSCRFGEAVAVPALFVSSQEIVCFVPAL-----------PANNTLEWSALPDQQQRDPHPLTGSRQLFVDSHAYPLYQQRLVGVEVTSNGQDYTDSGIAYLYQADTVISGVP-AVIPTPTSTFVYITGSGFVNSTSLMCQVGDSAPAPAIFVTANLMLC 9559          
BLAST of mRNA_H-paniculata_contig4.10363.1 vs. uniprot
Match: A0A7S1YSE0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YSE0_9STRA)

HSP 1 Score: 160 bits (404), Expect = 7.410e-44
Identity = 86/203 (42.36%), Postives = 115/203 (56.65%), Query Frame = 1
Query:    1 TDHRFPFLYFDDQGLSRISPVSGPAEAAGTRVTFYGRGFVNTTLLACRFGYAPPVPATFISPNELSCESPPLVIPTVTGTRGAERTSGLDWSALSEIRQRDVDPLTGSRRLFPRAHYFPLFLQRAVGAEVTCNGQDYTNRGITYLYQADASVQNISLAGGLDPAE-LGLFVTGENFVNSTHLACRVGGSTSSGTFLSSRLALC 606
            T+ RF F YF++  +  I PVSGPA  AGT V  +G GF+N+T   CRFG    VPA F+   EL CE+PP+           +    ++W ALSE +      +T    LF  AHY+PL+L + V  E+T N QDYT  G+T+LYQ D  + NI  A    P+    +F+ G  FVNSTHL+CR+G   S+ TFL+    LC
Sbjct:  150 TESRFSFYYFENTRMHHIKPVSGPALTAGTMVRVFGEGFINSTNTLCRFGDVE-VPAHFVREQELICETPPI-----------QDVRHMEWLALSEQKNNFTHNVTAKAELFRNAHYYPLYLGKLVSVEITNNAQDYTESGMTFLYQDDVVITNIFNAHVSSPSGGTPIFIQGTGFVNSTHLSCRIGHHASAATFLTREAILC 340          
BLAST of mRNA_H-paniculata_contig4.10363.1 vs. uniprot
Match: A0A8K1CJJ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJJ7_PYTOL)

HSP 1 Score: 162 bits (411), Expect = 1.140e-42
Identity = 85/202 (42.08%), Postives = 119/202 (58.91%), Query Frame = 1
Query:    1 TDHRFPFLYFDDQGLSRISPVSGPAEAAGTRVTFYGRGFVNTTLLACRFGYAPPVPATFISPNELSCESPPLVIPTVTGTRGAERTSGLDWSALSEIRQRDVDPLTGSRRLFPRAHYFPLFLQRAVGAEVTCNGQDYTNRGITYLYQADASVQNISLAGGLDPAELGLFVTGENFVNSTHLACRVGGSTSSGTFLSSRLALC 606
            +D  FPF Y+ +QG+ RI P+ GP   AGT VT  G GFVN+TLL+CRFG+    PA +++P  + C +PP+          ++ + GL    +SE R    DP TGS  LFP AHY+P +L R V  EV+ N Q+YT  GI ++Y  DA + ++S     D +   +F  G N++N+T LACRVG      TF+S +L LC
Sbjct: 6766 SDSGFPFFYYPEQGVRRIDPIFGPGRGAGTVVTVEGSGFVNSTLLSCRFGFVV-TPAEYLTPTLMRCRTPPV----------SKYSGGLAPVPISEYRNTYPDPTTGSAYLFPTAHYYPQYLTRLVTVEVSNNQQEYTLSGINFMYYDDAELLSVSPKQAYDVSSTTIFAYGRNYINTTALACRVGMRVFPATFVSPKLLLC 6956          
BLAST of mRNA_H-paniculata_contig4.10363.1 vs. uniprot
Match: A0A482S181_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S181_9ARCH)

HSP 1 Score: 161 bits (407), Expect = 3.920e-42
Identity = 99/210 (47.14%), Postives = 123/210 (58.57%), Query Frame = 1
Query:    1 TDHRFPFLYFDDQGLSRISPVSGPAEAAGTRVTFYGRGFVNTTLLACRFGYAPPVPATFISPNELSCESPPLVIPTVTGTRGAERTSGLDWSALSEIRQRDVDP------LTG--SRRLFPRAHYFPLFLQRAVGAEVTCNGQDYTNRGITYLYQADASVQNISLAGGLDPAELGLFVTGENFVNSTHLACRVGGSTSSGTFLSSRLALC 606
            T  R PF Y+ D+ LSRISPVSGPA+AAGT+V  +G GFVNTTLL CRFG     P  F+S + + C +PPL +           + GL  SALSE   R  DP      L G  + RLFP AH++PL+ QR V  EV+ N QD+T+ GI +LYQ DA V +I    G   A   + V G NFVNST L CR+G   +  TFL+    LC
Sbjct: 6535 TTSRTPFFYYSDEALSRISPVSGPAKAAGTKVNVFGTGFVNTTLLTCRFG-GTLGPGIFVSSSYIICPTPPLDM---------LASGGLKSSALSEQFNRFPDPAYLQLGLVGRAAYRLFPTAHFYPLYNQRLVTVEVSNNNQDFTHSGINFLYQQDAFVDSILPNVGQVNARTPIVVKGNNFVNSTLLRCRIGEYVAMPTFLAPDQILC 6734          
BLAST of mRNA_H-paniculata_contig4.10363.1 vs. uniprot
Match: W2PB50_PHYPN (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PB50_PHYPN)

HSP 1 Score: 158 bits (399), Expect = 5.450e-42
Identity = 89/203 (43.84%), Postives = 124/203 (61.08%), Query Frame = 1
Query:    1 TDHRFPFLYFDDQGLSRISPVSGPAEAAGTRVTFYGRGFVNTTLLACRFGYAPPVPATFISPNELSCESPPLVIPTVTGTRGAERTSGLDWSALSEIRQRDVDPLTGSRRLFPRAHYFPLFLQRAVGAEVTCNGQDYTNRGITYLYQADASVQNISLAGGLDPAE-LGLFVTGENFVNSTHLACRVGGSTSSGTFLSSRLALC 606
            TD   PF Y+++QG+  ISP  GPA AAGTR+   G   VN++LL+CR GY    P  +ISP ++ C +PPL  PT +G        GL  ++L E R + VDP  GS  LFP AHY+P +  R V  EV+ N QD++  GI +LY  D +++ I+     D  E L +F  G+NF+N+T LACR+G  T + TF++S+L LC
Sbjct:  272 TDTLIPFTYYEEQGVRSISPTFGPAHAAGTRIDVDGVALVNSSLLSCRVGYVV-TPGEYISPTKMRCTTPPL--PTHSG--------GLVPASLPEYRNQYVDPNVGSFYLFPDAHYYPQYFTRLVSVEVSNNQQDFSLSGINFLYYQDETLEAIAPTQAFDSDEPLLIFAYGQNFINTTALACRLGLQTFAATFVTSKLLLC 463          
BLAST of mRNA_H-paniculata_contig4.10363.1 vs. uniprot
Match: V9EM12_PHYPR (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=V9EM12_PHYPR)

HSP 1 Score: 160 bits (404), Expect = 9.680e-42
Identity = 89/203 (43.84%), Postives = 124/203 (61.08%), Query Frame = 1
Query:    1 TDHRFPFLYFDDQGLSRISPVSGPAEAAGTRVTFYGRGFVNTTLLACRFGYAPPVPATFISPNELSCESPPLVIPTVTGTRGAERTSGLDWSALSEIRQRDVDPLTGSRRLFPRAHYFPLFLQRAVGAEVTCNGQDYTNRGITYLYQADASVQNISLAGGLDPAE-LGLFVTGENFVNSTHLACRVGGSTSSGTFLSSRLALC 606
            TD   PF Y+++QG+  ISP  GPA AAGTR+   G   VN++LL+CR GY    P  +ISP ++ C +PPL  PT +G        GL  ++L E R + VDP  GS  LFP AHY+P +  R V  EV+ N QD++  GI +LY  D +++ I+     D  E L +F  G+NF+N+T LACR+G  T + TF++S+L LC
Sbjct:  517 TDTLIPFTYYEEQGVRSISPTFGPAHAAGTRIDMDGVALVNSSLLSCRVGYVV-TPGEYISPTKMRCTTPPL--PTHSG--------GLVPASLPEYRNQYVDPNVGSFYLFPDAHYYPQYFTRLVSVEVSNNQQDFSLSGINFLYYQDETLEAIAPTQAFDSDEPLSIFAYGQNFINTTALACRLGLQTFAATFVTSKLLLC 708          
BLAST of mRNA_H-paniculata_contig4.10363.1 vs. uniprot
Match: K3X6P9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6P9_GLOUD)

HSP 1 Score: 158 bits (399), Expect = 4.640e-41
Identity = 89/201 (44.28%), Postives = 119/201 (59.20%), Query Frame = 1
Query:    4 DHRFPFLYFDDQGLSRISPVSGPAEAAGTRVTFYGRGFVNTTLLACRFGYAPPVPATFISPNELSCESPPLVIPTVTGTRGAERTSGLDWSALSEIRQRDVDPLTGSRRLFPRAHYFPLFLQRAVGAEVTCNGQDYTNRGITYLYQADASVQNISLAGGLDPAELGLFVTGENFVNSTHLACRVGGSTSSGTFLSSRLALC 606
            D  FPF+Y+ +QG+ RISPV GPA AAGT VT  G GFVN++LLACRFG+    P  ++SP  ++C +PPL  P  +G        GL    LSE      DP  GS  LFP +HY+P +  R V  EV+ N QD++  G+ +LY  D ++  I      D A L +F  G NF+NST L CR+G    + TF++S+L LC
Sbjct: 6220 DTGFPFVYYVEQGVRRISPVFGPAFAAGTTVTVEGSGFVNSSLLACRFGFVM-TPGEYLSPRRMTCVTPPL--PKYSG--------GLQSVPLSEHCNTFPDPSHGSVYLFPDSHYYPQYWSRLVSFEVSNNRQDFSLSGVNFLYYQDTTLSAIYPPRAYDVATLSIFAKGANFINSTSLTCRLGLHVVNATFITSQLLLC 6409          
BLAST of mRNA_H-paniculata_contig4.10363.1 vs. uniprot
Match: A0A418BPR6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BPR6_9STRA)

HSP 1 Score: 157 bits (398), Expect = 5.860e-41
Identity = 96/202 (47.52%), Postives = 118/202 (58.42%), Query Frame = 1
Query:    1 TDHRFPFLYFDDQGLSRISPVSGPAEAAGTRVTFYGRGFVNTTLLACRFGYAPPVPATFISPNELSCESPPLVIPTVTGTRGAERTSGLDWSALSEIRQRDVDPLTGSRRLFPRAHYFPLFLQRAVGAEVTCNGQDYTNRGITYLYQADASVQNISLAGGLDPAELGLFVTGENFVNSTHLACRVGGSTSSGTFLSSRLALC 606
            T  R PF ++    L RI PV GPA AAG+RV  +G GFVN++ L CRFG    +PA+F SP +L+C +PPL             + GL    LSE R    DP TG+R LFP A +FPL   R V  E++ N QD+T  GI YLY  DA+V  I        A +GLFV G NF+NST LACRVG ST  G F++S L LC
Sbjct: 1081 TSSRHPFYFYPCPTLRRIFPVFGPAFAAGSRVDVFGTGFVNSSGLVCRFGEHV-LPASFRSPFQLTCLTPPL----------DPYSGGLQPLPLSEQRHAYPDPSTGTRLLFPTARHFPLVQGRLVSVEISNNHQDFTFTGINYLYYQDATVSAIKPTQLYAAANVGLFVQGLNFINSTLLACRVGVSTVPGVFVTSWLVLC 1271          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4.10363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FLK0_ECTSI5.850e-8871.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBB5_9PHAE3.890e-8567.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CCN3_9STRA1.070e-4648.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1YSE0_9STRA7.410e-4442.36Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A8K1CJJ7_PYTOL1.140e-4242.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A482S181_9ARCH3.920e-4247.14Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
W2PB50_PHYPN5.450e-4243.84Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
V9EM12_PHYPR9.680e-4243.84Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
K3X6P9_GLOUD4.640e-4144.28Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A418BPR6_9STRA5.860e-4147.52Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4contigH-paniculata_contig4:31923..32970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.4
Seed ortholog evalue2e-77
Seed eggNOG ortholog2880.D7FLK0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.semaphorin-plexin signaling pathway
EggNOG OGsKOG3610@1,KOG3610@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size606
Cds size606
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4.10363.1prot_H-paniculata_contig4.10363.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4 31923..32970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930223.5723672-CDS-H-paniculata_contig4:31922..321411622930223.5723672-CDS-H-paniculata_contig4:31922..32141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4 31923..32141 -
1691481198.0983596-CDS-H-paniculata_contig4:31922..321411691481198.0983596-CDS-H-paniculata_contig4:31922..32141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4 31923..32141 -
1622930223.5868857-CDS-H-paniculata_contig4:32275..326231622930223.5868857-CDS-H-paniculata_contig4:32275..32623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4 32276..32623 -
1691481198.1098905-CDS-H-paniculata_contig4:32275..326231691481198.1098905-CDS-H-paniculata_contig4:32275..32623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4 32276..32623 -
1622930223.603351-CDS-H-paniculata_contig4:32931..329701622930223.603351-CDS-H-paniculata_contig4:32931..32970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4 32932..32970 -
1691481198.119906-CDS-H-paniculata_contig4:32931..329701691481198.119906-CDS-H-paniculata_contig4:32931..32970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4 32932..32970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4.10363.1

>prot_H-paniculata_contig4.10363.1 ID=prot_H-paniculata_contig4.10363.1|Name=mRNA_H-paniculata_contig4.10363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
TDHRFPFLYFDDQGLSRISPVSGPAEAAGTRVTFYGRGFVNTTLLACRFG
YAPPVPATFISPNELSCESPPLVIPTVTGTRGAERTSGLDWSALSEIRQR
DVDPLTGSRRLFPRAHYFPLFLQRAVGAEVTCNGQDYTNRGITYLYQADA
SVQNISLAGGLDPAELGLFVTGENFVNSTHLACRVGGSTSSGTFLSSRLA
LC
back to top

mRNA from alignment at H-paniculata_contig4:31923..32970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4.10363.1 ID=mRNA_H-paniculata_contig4.10363.1|Name=mRNA_H-paniculata_contig4.10363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1048bp|location=Sequence derived from alignment at H-paniculata_contig4:31923..32970- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGATCACCGGTTCCCCTTCTTGTACTTCGACGACCAGGTGATTCCACC GTGTTCTCGAGGTAGATCCGTTGTTCAAAATAAACAGCATTTCATTAGTA CTTTGCCATCTGTACGGGCGAGCCATACCGTGGACTCGATTGCATGGCCT CGAGATTCCACCAGCATACGGTATCACCTTGCGCGCTAGGTGCTCTGATC GTACCAAACGTGTCAATGTTGAACTTTCTCTCGTTTGTGAATTTCTTGTC CAATCGAGCGAACCCGAGCTACAAGTTTCATCAACGAACACCAAGCAAAA CAGTTCACAAGCATTCGTTCCATCGTTCCTCCCACTCGCGTTTTCAGGGC CTCTCGAGAATATCCCCAGTGTCGGGTCCCGCGGAAGCGGCCGGCACACG GGTAACTTTCTACGGTCGTGGGTTCGTCAACACCACGCTTCTTGCTTGTC GCTTCGGCTACGCACCTCCAGTCCCTGCAACGTTTATAAGCCCAAACGAG CTGTCGTGCGAGTCGCCCCCTCTTGTTATCCCAACTGTAACTGGGACGAG GGGTGCGGAAAGAACTAGTGGGCTAGATTGGTCCGCACTGAGCGAGATCC GCCAGCGAGATGTTGATCCACTCACGGGGTCTCGTCGACTGTTCCCGCGA GCGCATTACTTTCCCTTGTTTCTGCAACGAGCTGTTGGTGCAGAGGTATG TCATCAGGCGCTGCAGCGCGCACTTGGTCACCTAGTGTAGCACAGGCTAT TTAAACGTCCGCCCACTTGCTGGAGAAAGTCATCGCCGGCAATGACCTAA CTTCAACACTCGTTTGACCTATTCCGCAGGTGACTTGCAACGGACAAGAC TACACCAATCGGGGGATTACCTATCTGTATCAGGCCGACGCCTCTGTGCA AAATATATCATTAGCAGGAGGCCTCGACCCAGCGGAGCTCGGACTCTTCG TCACGGGGGAAAATTTTGTCAATTCTACACACCTCGCTTGTAGAGTTGGA GGTTCCACGTCCTCCGGCACGTTCTTGTCTTCGAGACTTGCGTTGTGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4:31923..32970-

>mRNA_H-paniculata_contig4.10363.1 ID=mRNA_H-paniculata_contig4.10363.1|Name=mRNA_H-paniculata_contig4.10363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig4:31923..32970- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGATCACCGGTTCCCCTTCTTGTACTTCGACGACCAGACGGATCACCG
GTTCCCCTTCTTGTACTTCGACGACCAGGGCCTCTCGAGAATATCCCCAG
TGTCGGGTCCCGCGGAAGCGGCCGGCACACGGGTAACTTTCTACGGTCGT
GGGTTCGTCAACACCACGCTTCTTGCTTGTCGCTTCGGCTACGCACCTCC
AGTCCCTGCAACGTTTATAAGCCCAAACGAGCTGTCGTGCGAGTCGCCCC
CTCTTGTTATCCCAACTGTAACTGGGACGAGGGGTGCGGAAAGAACTAGT
GGGCTAGATTGGTCCGCACTGAGCGAGATCCGCCAGCGAGATGTTGATCC
ACTCACGGGGTCTCGTCGACTGTTCCCGCGAGCGCATTACTTTCCCTTGT
TTCTGCAACGAGCTGTTGGTGCAGAGGGCCTCTCGAGAATATCCCCAGTG
TCGGGTCCCGCGGAAGCGGCCGGCACACGGGTAACTTTCTACGGTCGTGG
GTTCGTCAACACCACGCTTCTTGCTTGTCGCTTCGGCTACGCACCTCCAG
TCCCTGCAACGTTTATAAGCCCAAACGAGCTGTCGTGCGAGTCGCCCCCT
CTTGTTATCCCAACTGTAACTGGGACGAGGGGTGCGGAAAGAACTAGTGG
GCTAGATTGGTCCGCACTGAGCGAGATCCGCCAGCGAGATGTTGATCCAC
TCACGGGGTCTCGTCGACTGTTCCCGCGAGCGCATTACTTTCCCTTGTTT
CTGCAACGAGCTGTTGGTGCAGAGGTGACTTGCAACGGACAAGACTACAC
CAATCGGGGGATTACCTATCTGTATCAGGCCGACGCCTCTGTGCAAAATA
TATCATTAGCAGGAGGCCTCGACCCAGCGGAGCTCGGACTCTTCGTCACG
GGGGAAAATTTTGTCAATTCTACACACCTCGCTTGTAGAGTTGGAGGTTC
CACGTCCTCCGGCACGTTCTTGTCTTCGAGACTTGCGTTGTGTGTGACTT
GCAACGGACAAGACTACACCAATCGGGGGATTACCTATCTGTATCAGGCC
GACGCCTCTGTGCAAAATATATCATTAGCAGGAGGCCTCGACCCAGCGGA
GCTCGGACTCTTCGTCACGGGGGAAAATTTTGTCAATTCTACACACCTCG
CTTGTAGAGTTGGAGGTTCCACGTCCTCCGGCACGTTCTTGTCTTCGAGA
CTTGCGTTGTGT
back to top