mRNA_H-paniculata_contig39971.10353.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39971.10353.1
Unique NamemRNA_H-paniculata_contig39971.10353.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39971.10353.1 vs. uniprot
Match: A0A6H5K9D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D2_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 3.670e-45
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = 1 
Query:    1 NPPRYGRAYKSFGGGREGREACEALYALCNMGSVDTMVSNFLQPLQELADENSRVHCSLNLNTETGRLSSRKPNLQNQPALEKDQYKIR 267
            +PP+YG AY+ FGGG+EG+EACEALYALCNMGSVDTMVSNFLQPLQEL DE SRVHCSLNLNTETGRLS+RKPNLQNQPALEKDQYKIR
Sbjct: 1246 DPPKYGAAYEHFGGGQEGKEACEALYALCNMGSVDTMVSNFLQPLQELVDEKSRVHCSLNLNTETGRLSARKPNLQNQPALEKDQYKIR 1334
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BLAST of mRNA_H-paniculata_contig39971.10353.1 vs. uniprot
Match: D8LMQ5_ECTSI (Pol1-like DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ5_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 2.360e-44
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = 1 
Query:    1 NPPRYGRAYKSFGGGREGREACEALYALCNMGSVDTMVSNFLQPLQELADENSRVHCSLNLNTETGRLSSRKPNLQNQPALEKDQYKIR 267
            +PP+YG AY  FGGG EG+EACEALYALCNMGSVDTMVSNFLQPLQEL DE SRVHCSLNLNTETGRLS+RKPNLQNQPALEKDQYKIR
Sbjct: 1117 DPPKYGAAYGHFGGGLEGKEACEALYALCNMGSVDTMVSNFLQPLQELVDEKSRVHCSLNLNTETGRLSARKPNLQNQPALEKDQYKIR 1205
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BLAST of mRNA_H-paniculata_contig39971.10353.1 vs. uniprot
Match: A0A7S4VYF2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VYF2_9STRA)

HSP 1 Score: 139 bits (350), Expect = 9.550e-41
Identity = 67/89 (75.28%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 NPPRYGRAYKSFGGGREGREACEALYALCNMGSVDTMVSNFLQPLQELADENSRVHCSLNLNTETGRLSSRKPNLQNQPALEKDQYKIR 267
            NPP+YG AY+ FGGG  G EACEA Y+L  +GS+DTM++NFL  LQ LADE SRVHCSLNLNT+TGRLSSR PNLQNQPALEKD+YKIR
Sbjct:   14 NPPKYGTAYEFFGGGDAGHEACEAFYSLTMVGSIDTMIANFLTSLQSLADEQSRVHCSLNLNTDTGRLSSRMPNLQNQPALEKDKYKIR 102
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BLAST of mRNA_H-paniculata_contig39971.10353.1 vs. uniprot
Match: A0A8J2SV56_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SV56_9STRA)

HSP 1 Score: 141 bits (355), Expect = 6.100e-37
Identity = 67/86 (77.91%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:   10 RYGRAYKSFGGGREGREACEALYALCNMGSVDTMVSNFLQPLQELADENSRVHCSLNLNTETGRLSSRKPNLQNQPALEKDQYKIR 267
            ++G AY +FGGGREG EACEAL ALC+MGS+DTM++ F++PLQ+LADE SRVHCSLNLNTETGRLSSR+PNLQNQPAL+KDQY IR
Sbjct:  662 KWGDAYSAFGGGREGEEACEALDALCSMGSIDTMLNTFIKPLQDLADEQSRVHCSLNLNTETGRLSSRRPNLQNQPALDKDQYLIR 747
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BLAST of mRNA_H-paniculata_contig39971.10353.1 vs. uniprot
Match: A0A448ZMD9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZMD9_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.860e-36
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 NPPRYGRAYKSFGGGREGREACEALYALCNMGSVDTMVSNFLQPLQELADENSRVHCSLNLNTETGRLSSRKPNLQNQPALEKDQYKIR 267
            +PPRYG A++ FGGG  G EAC  LY+LC +GS+DTM++NFL  LQ LAD  SRVHCSLNLNTETGRLSSR+PNLQNQPALEKD+YKIR
Sbjct:  410 DPPRYGTAFEFFGGGENGHEACVGLYSLCAIGSIDTMIANFLTSLQSLADHQSRVHCSLNLNTETGRLSSRRPNLQNQPALEKDKYKIR 498
[Close]
BLAST of mRNA_H-paniculata_contig39971.10353.1 vs. uniprot
Match: A0A7S1YXE2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YXE2_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.330e-36
Identity = 67/89 (75.28%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 NPPRYGRAYKSFGGGREGREACEALYALCNMGSVDTMVSNFLQPLQELADENSRVHCSLNLNTETGRLSSRKPNLQNQPALEKDQYKIR 267
            NPP+YG AY+ FGGG  G EACEA Y+L  +GS+DTM++NFL  LQ LADE SRVHCSLNLNT+TGRLSSR PNLQNQPALEKD+YKIR
Sbjct:  368 NPPKYGTAYEFFGGGDAGHEACEAFYSLTMVGSIDTMIANFLTSLQSLADEQSRVHCSLNLNTDTGRLSSRMPNLQNQPALEKDKYKIR 456
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BLAST of mRNA_H-paniculata_contig39971.10353.1 vs. uniprot
Match: I2CP17_NANGC (DNA polymerase I n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP17_NANGC)

HSP 1 Score: 137 bits (344), Expect = 2.390e-36
Identity = 67/85 (78.82%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:   13 YGRAYKSFGGGREGREACEALYALCNMGSVDTMVSNFLQPLQELADENSRVHCSLNLNTETGRLSSRKPNLQNQPALEKDQYKIR 267
            +G AYK F  G+EG EAC AL ALC MGS+DTM+SNFL PLQ+LAD++SRVHCSLNLNTETGRLS+R+PNLQNQPALEKDQYKIR
Sbjct:  118 WGSAYKHFNEGKEGEEACVALDALCAMGSIDTMLSNFLLPLQDLADDDSRVHCSLNLNTETGRLSARRPNLQNQPALEKDQYKIR 202
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BLAST of mRNA_H-paniculata_contig39971.10353.1 vs. uniprot
Match: A0A0M0J6G4_9EUKA (DNA polymerase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J6G4_9EUKA)

HSP 1 Score: 138 bits (348), Expect = 4.860e-36
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 1 
Query:    1 NPPRYGRAYKSFGGGREGREACEALYALCNMGSVDTMVSNFLQPLQELADENSRVHCSLNLNTETGRLSSRKPNLQNQPALEKDQYKIR 267
            +PP YG AY+ FGGG +G EACEA+ +L  MG++DTM+SNF+ PLQE ADE SRVHCSLNLNTETGRLSSR PNLQNQPALEKDQY+IR
Sbjct:  421 SPPVYGTAYEQFGGGAKGAEACEAIASLVGMGAIDTMLSNFILPLQENADERSRVHCSLNLNTETGRLSSRAPNLQNQPALEKDQYRIR 509
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BLAST of mRNA_H-paniculata_contig39971.10353.1 vs. uniprot
Match: A0A7S3TCT4_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TCT4_EMIHU)

HSP 1 Score: 135 bits (339), Expect = 6.510e-36
Identity = 65/89 (73.03%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    1 NPPRYGRAYKSFGGGREGREACEALYALCNMGSVDTMVSNFLQPLQELADENSRVHCSLNLNTETGRLSSRKPNLQNQPALEKDQYKIR 267
            +PP +G AY +FGGG  G EAC AL ALC MG++DTM+SNF+ PLQ+LAD  SR+HCSLNLNTETGRLSSR PNLQNQPALEKD+Y IR
Sbjct:   69 DPPVFGSAYGAFGGGEVGEEACRALEALCQMGAIDTMLSNFILPLQDLADGTSRIHCSLNLNTETGRLSSRTPNLQNQPALEKDKYLIR 157
[Close]
BLAST of mRNA_H-paniculata_contig39971.10353.1 vs. uniprot
Match: A0A7S2JAB8_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JAB8_9EUKA)

HSP 1 Score: 135 bits (340), Expect = 2.330e-35
Identity = 66/89 (74.16%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    1 NPPRYGRAYKSFGGGREGREACEALYALCNMGSVDTMVSNFLQPLQELADENSRVHCSLNLNTETGRLSSRKPNLQNQPALEKDQYKIR 267
            +PP YG AY+ FGGG  G  ACEA+ AL  +G++DTM+SNF+ PLQE AD  SRVHCSLNLNTETGRLSSR+PNLQNQPALEKDQYKIR
Sbjct:  202 DPPVYGSAYQQFGGGAAGARACEAIAALVAVGAIDTMLSNFILPLQEYADAESRVHCSLNLNTETGRLSSRRPNLQNQPALEKDQYKIR 290
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39971.10353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9D2_9PHAE3.670e-4588.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMQ5_ECTSI2.360e-4488.76Pol1-like DNA polymerase n=1 Tax=Ectocarpus silicu... [more]
A0A7S4VYF2_9STRA9.550e-4175.28Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A8J2SV56_9STRA6.100e-3777.91Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A448ZMD9_9STRA1.860e-3674.16Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S1YXE2_9STRA2.330e-3675.28Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
I2CP17_NANGC2.390e-3678.82DNA polymerase I n=1 Tax=Nannochloropsis gaditana ... [more]
A0A0M0J6G4_9EUKA4.860e-3675.28DNA polymerase n=1 Tax=Chrysochromulina tobinii Ta... [more]
A0A7S3TCT4_EMIHU6.510e-3673.03Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S2JAB8_9EUKA2.330e-3574.16Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39971contigH-paniculata_contig39971:202..925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue2.5e-38
Seed eggNOG ortholog2880.D8LMQ5
KEGG rclassRC02795
KEGG koko:K02335
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0032042,GO:0033258,GO:0033259,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930222.582184-CDS-H-paniculata_contig39971:201..3391622930222.582184-CDS-H-paniculata_contig39971:201..339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39971 202..339 +
1691481197.654371-CDS-H-paniculata_contig39971:201..3391691481197.654371-CDS-H-paniculata_contig39971:201..339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39971 202..339 +
1622930222.599586-CDS-H-paniculata_contig39971:775..9251622930222.599586-CDS-H-paniculata_contig39971:775..925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39971 776..925 +
1691481197.6673753-CDS-H-paniculata_contig39971:775..9251691481197.6673753-CDS-H-paniculata_contig39971:775..925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39971 776..925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39971.10353.1prot_H-paniculata_contig39971.10353.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39971 202..925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39971.10353.1

>prot_H-paniculata_contig39971.10353.1 ID=prot_H-paniculata_contig39971.10353.1|Name=mRNA_H-paniculata_contig39971.10353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
NPPRYGRAYKSFGGGREGREACEALYALCNMGSVDTMVSNFLQPLQELAD
ENSRVHCSLNLNTETGRLSSRKPNLQNQPALEKDQYKIRVRLMVV*
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mRNA from alignment at H-paniculata_contig39971:202..925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39971.10353.1 ID=mRNA_H-paniculata_contig39971.10353.1|Name=mRNA_H-paniculata_contig39971.10353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=724bp|location=Sequence derived from alignment at H-paniculata_contig39971:202..925+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCCGCCGAGGTACGGAAGAGCGTACAAGAGCTTTGGCGGGGGGCGGGA
AGGGCGGGAAGCTTGTGAAGCGCTGTACGCGCTGTGCAACATGGGGTCGG
TTGATACGATGGTCTCTAACTTTTTGCAGCCACTCCAGGTTTGTGATTTG
CACTTGGCAATAATCTTATTTCTTATCTTGTTTGGTAGTGATGGAGGTGG
TGATGTCATTGTTCTTCCATATCTTCCGATTCTCGTTGTTGCTAATCGTC
TTCCTTCTGTTTTTTATTGTCGTTGGTGTTGGTGTTGATTTCATGTTTAT
TGCGATTGCTGTTAATGGTGGTGGTGGTGCGATGGTATTAGCATTAGTGG
CGGTGTGTTGGTGGTGTAGTGTTGATTCATGTTCAGGTAATCTGATATCA
GGAGTTGGTGAACGGGAACAGCCGCATCCACTGCAGCCTGAATGATGGCC
AAGAAGTTGCCAATATCAATCAATCTGCACGGAACCTACCGCAAAGCGTC
CAACTTGCATACAGTTGGATCCATAGCGTTGGTTAACACTTTAAAAAACT
TCGATCCACGTGCCCGTGTGTCAGGAACTTGCGGACGAGAACAGCCGCGT
CCACTGCAGCCTGAACCTCAATACGGAGACGGGACGGCTGTCCTCGAGAA
AACCCAACTTGCAGAACCAGCCGGCCCTGGAGAAGGACCAGTACAAAATA
AGGGTGAGACTGATGGTTGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig39971:202..925+

>mRNA_H-paniculata_contig39971.10353.1 ID=mRNA_H-paniculata_contig39971.10353.1|Name=mRNA_H-paniculata_contig39971.10353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig39971:202..925+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCCGCCGAGGTACGGAAGAGCGTACAAGAGCTTTGGCGGGGGGCGGGA
AGGGCGGGAAGCTTGTGAAGCGCTGTACGCGCTGTGCAACATGGGGTCGG
TTGATACGATGGTCTCTAACTTTTTGCAGCCACTCCAGAATCCGCCGAGG
TACGGAAGAGCGTACAAGAGCTTTGGCGGGGGGCGGGAAGGGCGGGAAGC
TTGTGAAGCGCTGTACGCGCTGTGCAACATGGGGTCGGTTGATACGATGG
TCTCTAACTTTTTGCAGCCACTCCAGGAACTTGCGGACGAGAACAGCCGC
GTCCACTGCAGCCTGAACCTCAATACGGAGACGGGACGGCTGTCCTCGAG
AAAACCCAACTTGCAGAACCAGCCGGCCCTGGAGAAGGACCAGTACAAAA
TAAGGGTGAGACTGATGGTTGTGTGAGAACTTGCGGACGAGAACAGCCGC
GTCCACTGCAGCCTGAACCTCAATACGGAGACGGGACGGCTGTCCTCGAG
AAAACCCAACTTGCAGAACCAGCCGGCCCTGGAGAAGGACCAGTACAAAA
TAAGGGTGAGACTGATGGTTGTGTGA
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