mRNA_H-paniculata_contig3995.10350.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3995.10350.1 vs. uniprot
Match: UPI001F5FB334 (uncharacterized protein LOC124829824 n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5FB334) HSP 1 Score: 108 bits (269), Expect = 4.170e-24 Identity = 75/230 (32.61%), Postives = 124/230 (53.91%), Query Frame = 1
Query: 4 FKRKQKEDGSMAHYKARLVTQGFSQVEGKAFFKTSAPVARMSKLRTVFRLAAEHDFELEGMDVDAPYLKAPVEEELFVKLPSEF-SPFSQDIPFVRRLRKSLYGLKQSGQKWNNTLDDFLVGIGPLALRNLRGRRNILSSLPITLSPHWTLWMFKVK--EDGRL---KAHFVVQRWAQQHGTDCGSRSAPVRRLESQRLLLAIRASRDWSVLTMDLQLAFLNATLKESIY 675
++ K DGS+ +KARLV +G++Q+ G + T APVAR+ +R + +AA+ ++++ +DV + +L ++EE++V+ P F +D P + +K Y + W +++ L I + + IL P + W+++ K DG + KA VV+ +AQ G D APV RL++ RLLLAI A R+W V +D++ AFLN L+E IY
Sbjct: 125 YRTKLNADGSINKHKARLVVKGYAQIFGIDYLDTFAPVARLDTIRLLLAIAAQRNWKVYQLDVKSAFLNGFLQEEIYVEQPQGFVKEGEEDRPSI--FQKHDYEEVKKSPHWKVAMNEELAMIE-------KNQTWILMEKPQGIKVIGVKWVYRTKLNADGSINKHKARLVVKGYAQIFGIDYLDTFAPVARLDTIRLLLAIAAQRNWKVYQLDVKSAFLNGFLQEEIY 345
BLAST of mRNA_H-paniculata_contig3995.10350.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS) HSP 1 Score: 104 bits (259), Expect = 5.190e-22 Identity = 55/123 (44.72%), Postives = 76/123 (61.79%), Query Frame = 1
Query: 4 FKRKQKEDGSMAHYKARLVTQGFSQVEGKAFFKTSAPVARMSKLRTVFRLAAEHDFELEGMDVDAPYLKAPVEEELFVKLPSEFSPFSQDIPFVRRLRKSLYGLKQSGQKWNNTLDDFLVGIG 372
F +K EDG+++ YKARLV QG+SQ+ G + +T APV R+ +R +AA D E+ MDV YL +EEE++++ P + S V RLRK+LYGLKQSG++WN D L IG
Sbjct: 929 FLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGR---VCRLRKTLYGLKQSGREWNREFDRKLTSIG 1048
BLAST of mRNA_H-paniculata_contig3995.10350.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY) HSP 1 Score: 99.4 bits (246), Expect = 6.640e-22 Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 1
Query: 4 FKRKQKEDGSMAHYKARLVTQGFSQVEGKAFFKTSAPVARMSKLRTVFRLAAEHDFELEGMDVDAPYLKAPVEEELFVKLPSEFSPFSQDIPFVRRLRKSLYGLKQSGQKWNNTLDDFLVGIG 372
F++K ++G + YKARLV QG+SQ+ G F +T APV + +R + LA +++E+ MDV YL ++EE++++ P F+ S V RL K+LYGLKQSG KWN L L +G
Sbjct: 22 FQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGH---VCRLHKTLYGLKQSGHKWNRKLHRKLTELG 141
BLAST of mRNA_H-paniculata_contig3995.10350.1 vs. uniprot
Match: A0A7D9L0S1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L0S1_PARCT) HSP 1 Score: 98.6 bits (244), Expect = 9.560e-22 Identity = 49/111 (44.14%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 43 YKARLVTQGFSQVEGKAFFKTSAPVARMSKLRTVFRLAAEHDFELEGMDVDAPYLKAPVEEELFVKLPSEFSPFSQDIPF-VRRLRKSLYGLKQSGQKWNNTLDDFLVGIG 372
YKAR V +G+SQ+ G + +T +P ARM+ +R + +LA +++ + MDV YL AP++ EL+V+ P F+ +D + V +LRKSLYGLKQSG+ WN+ L LV G
Sbjct: 44 YKARFVAKGYSQIPGVDYHETFSPTARMTSIRILMQLAMQYNLTIHQMDVKTAYLNAPIDCELYVEQPEGFTMTGKDGEYLVYKLRKSLYGLKQSGRNWNSVLHSHLVSEG 154
BLAST of mRNA_H-paniculata_contig3995.10350.1 vs. uniprot
Match: A0A6S7H257_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H257_PARCT) HSP 1 Score: 101 bits (252), Expect = 1.910e-21 Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = 1
Query: 4 FKRKQKEDGSMAHYKARLVTQGFSQVEGKAFFKTSAPVARMSKLRTVFRLAAEHDFELEGMDVDAPYLKAPVEEELFVKLPSEF-SPFSQDIPFVRRLRKSLYGLKQSGQKWNNTLDDFLVGIG 372
FK K+K +G + YKARLV QG+SQ G + + APVAR S +RT+ LA HD E+ MDV +L +E +++++ P F P D V +L++S+YGLKQS + WN TLD+FL+ G
Sbjct: 263 FKVKRKANGEVDRYKARLVAQGYSQTYGVDYEEVFAPVARYSSIRTLLALANAHDLEIHQMDVTTAFLNGSLEHDIYMEQPEGFVDPNCPD--HVCKLKRSIYGLKQSARCWNQTLDNFLIKNG 384
BLAST of mRNA_H-paniculata_contig3995.10350.1 vs. uniprot
Match: A0A699IEH1_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699IEH1_TANCI) HSP 1 Score: 102 bits (254), Expect = 2.230e-21 Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 1
Query: 10 RKQKEDGSMAHYKARLVTQGFSQVEGKAFFKTSAPVARMSKLRTVFRLAAEHDFELEGMDVDAPYLKAPVEEELFVKLPSEFSPFSQDIPFVRRLRKSLYGLKQSGQKWNNTLDDFLV 363
RK K DGS+ YKARLV QGF Q EG FF T APVAR+S +R + LAA HD + MDV +L ++EE+++K P F + V +L+KSLYGLKQ+ ++W+ DD ++
Sbjct: 497 RKMKVDGSIDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLNGDLDEEIYMKQPEGFVMLGHESN-VCKLKKSLYGLKQTPKQWHQKFDDVVL 613
BLAST of mRNA_H-paniculata_contig3995.10350.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY) HSP 1 Score: 102 bits (253), Expect = 3.270e-21 Identity = 53/123 (43.09%), Postives = 77/123 (62.60%), Query Frame = 1
Query: 4 FKRKQKEDGSMAHYKARLVTQGFSQVEGKAFFKTSAPVARMSKLRTVFRLAAEHDFELEGMDVDAPYLKAPVEEELFVKLPSEFSPFSQDIPFVRRLRKSLYGLKQSGQKWNNTLDDFLVGIG 372
F+RK ++G + YKARLV QG+SQ+ G F +T APV R+ +R + LA +++E+ MDV YL ++EE++++ P F S I RLRK+LYGLKQSG++WN L L +G
Sbjct: 957 FQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRIC---RLRKTLYGLKQSGREWNRKLHRELTELG 1076
BLAST of mRNA_H-paniculata_contig3995.10350.1 vs. uniprot
Match: G7E3S6_MIXOS (Integrase catalytic domain-containing protein n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E3S6_MIXOS) HSP 1 Score: 100 bits (249), Expect = 1.090e-20 Identity = 50/123 (40.65%), Postives = 80/123 (65.04%), Query Frame = 1
Query: 4 FKRKQKEDGSMAHYKARLVTQGFSQVEGKAFFKTSAPVARMSKLRTVFRLAAEHDFELEGMDVDAPYLKAPVEEELFVKLPSEFSPFSQDIPFVRRLRKSLYGLKQSGQKWNNTLDDFLVGIG 372
F K E G + YKARLV +G+ Q+ G +F+TSA VA + +RTV LAA D+EL D+ + +L +P+EE++++K ++++ Q+ V +L+K++YGLKQ+G W NTL + L+ G
Sbjct: 814 FATKVDEKGEVYRYKARLVAKGYRQIPGVDYFETSASVASLPAVRTVLALAASRDYELIQADITSAFLNSPLEEDIYIKQQADYTVPGQET-LVCKLKKAIYGLKQAGLAWVNTLSERLIAFG 935
BLAST of mRNA_H-paniculata_contig3995.10350.1 vs. uniprot
Match: A0A401H727_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H727_9APHY) HSP 1 Score: 100 bits (248), Expect = 1.440e-20 Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 1
Query: 4 FKRKQKEDGSMAHYKARLVTQGFSQVEGKAFFKTSAPVARMSKLRTVFRLAAEHDFELEGMDVDAPYLKAPVEEELFVKLPSEFSPFSQDIPFVRRLRKSLYGLKQSGQKWNNTLDDFLVGIG 372
F+RK ++ + YKARLV QG+SQ+ G F +T APV R+ +R + LA +++E+ MDV YL ++EE++++ P F S I RLRK+LYGLKQSG KWN L L+ +G
Sbjct: 762 FQRKTNKESQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRIC---RLRKTLYGLKQSGCKWNRKLHRELMELG 881
BLAST of mRNA_H-paniculata_contig3995.10350.1 vs. uniprot
Match: Q2R3J5_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2R3J5_ORYSJ) HSP 1 Score: 100 bits (248), Expect = 1.520e-20 Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 1
Query: 4 FKRKQKEDGSMAHYKARLVTQGFSQVEGKAFFKTSAPVARMSKLRTVFRLAAEHDFELEGMDVDAPYLKAPVEEELFVKLPSEFSPFSQDIP-FVRRLRKSLYGLKQSGQKWNNTLDDFLVGIG 372
FK KQ EDG + KARLV QGF+QVEG F +T APVAR+ +R + AA F+L MDV++ +L ++EE++VK P F + D P V +L K+LYGLKQ+ + W + L +FL+ G
Sbjct: 1046 FKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAIRLLLAFAASKGFKLYQMDVNSDFLNGFIQEEVYVKQPPGFE--NPDFPNHVFKLSKALYGLKQAPRAWYDRLKNFLLAKG 1167 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3995.10350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3995.10350.1 >prot_H-paniculata_contig3995.10350.1 ID=prot_H-paniculata_contig3995.10350.1|Name=mRNA_H-paniculata_contig3995.10350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp FFKRKQKEDGSMAHYKARLVTQGFSQVEGKAFFKTSAPVARMSKLRTVFRback to top mRNA from alignment at H-paniculata_contig3995:15761..16599+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3995.10350.1 ID=mRNA_H-paniculata_contig3995.10350.1|Name=mRNA_H-paniculata_contig3995.10350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=839bp|location=Sequence derived from alignment at H-paniculata_contig3995:15761..16599+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3995:15761..16599+ >mRNA_H-paniculata_contig3995.10350.1 ID=mRNA_H-paniculata_contig3995.10350.1|Name=mRNA_H-paniculata_contig3995.10350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig3995:15761..16599+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |