mRNA_H-paniculata_contig39915.10340.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39915.10340.1
Unique NamemRNA_H-paniculata_contig39915.10340.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A0J7KG03_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KG03_LASNI)

HSP 1 Score: 107 bits (266), Expect = 8.290e-24
Identity = 62/156 (39.74%), Postives = 88/156 (56.41%), Query Frame = -2
Query:    2 SQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFVCP----------RNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRREKVD-EFKHNISQPFRMKDLG 436
            SQ+EG D+ ET +PV R +++    +LA +HD  ++ MDV AAYL+  +++E++VK P E            P          R WN    D L  +G  RS  DSC+YF RD+  ++ +++AVYVDDL+I    EKV    K  +SQ F MKDLG
Sbjct:  702 SQIEGIDYNETYSPVVRYTSIQFLCALAVKHDLYMDQMDVTAAYLHGDIEQEIYVKPPEELVKSGEKGKVWRPKVYIRTEASGRAWNKKFHDTLTDMGFKRSQADSCVYFKRDN--KSLVIIAVYVDDLLILASNEKVKTSLKKKLSQTFDMKDLG 855          
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.170e-23
Identity = 59/163 (36.20%), Postives = 93/163 (57.06%), Query Frame = -2
Query:    2 YSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFV----------------CPRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQPFRMKDLG 439
            YSQ  G D+ ET  PVA+ +++   +SLAA+H+ EL+ MDV+ A+LN+ + E++++++P    L     P +                 PR WN T+D F++ IG  +S  D C+Y  R D  E  +LV++YVDDL++A    E +   K  +S+ F+M DLG
Sbjct:  117 YSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIP--MGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQD--EDIILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLG 275          
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A8J5ZCY7_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZCY7_9ROSI)

HSP 1 Score: 105 bits (263), Expect = 2.210e-23
Identity = 58/158 (36.71%), Postives = 97/158 (61.39%), Query Frame = -2
Query:    2 YSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFS-LFSRDIPFV----------CPRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRREKV-DEFKHNISQPFRMKDLG 439
            +SQ  G D+ ET APVAR+ T+   ++LAA+ ++++  +DV +A+LN  ++EE++V+ P  F  L   D+ +            PR W + +D +LVG+G +RS ++  LY  + +G +T L+V+VYVDDL++ G  + +  +FK  + Q F M DLG
Sbjct:  839 FSQKYGLDYLETFAPVARLDTIRLLVALAAQMEWKIHQLDVKSAFLNGFLEEEIYVEQPEGFKVLHKEDMVYKLKKALYGLKQAPRAWYSRIDSYLVGLGFERSLSEPTLYVKKKNG-KTQLIVSVYVDDLLVTGGDQAILADFKIKMHQMFEMSDLG 995          
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A7D9L0S1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L0S1_PARCT)

HSP 1 Score: 100 bits (249), Expect = 2.960e-23
Identity = 56/160 (35.00%), Postives = 91/160 (56.88%), Query Frame = -2
Query:    2 YSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFVC-------------PRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQPFRMKDLG 439
            YSQ+ G D+ ET +P ARM+++   + LA +++  +  MDV  AYLNAP+  EL+V+ P  F++  +D  ++               RNWN+ L   LV  G  +S +DSC+Y      G++  +V ++VDD++IA      +   K N+S+ F+MKD+G
Sbjct:   53 YSQIPGVDYHETFSPTARMTSIRILMQLAMQYNLTIHQMDVKTAYLNAPIDCELYVEQPEGFTMTGKDGEYLVYKLRKSLYGLKQSGRNWNSVLHSHLVSEGFIQSQSDSCVYTKIS--GKSMTIVIIWVDDIIIASNCTVTLTNVKGNLSKRFQMKDMG 210          
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 104 bits (259), Expect = 7.610e-23
Identity = 59/158 (37.34%), Postives = 90/158 (56.96%), Query Frame = -2
Query:    2 YSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFVC------------PRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQPFRMKDLG 439
            +SQ+ G DF +T APVA+++++   ++LAA HD+++  MDV  AYLNA ++EE+F+K PP  +   ++  +VC             R W   +   L  +GL RS  D C+++  +D     L++A+ VDD  IAG    V  FK  IS+ F M DLG
Sbjct: 1032 FSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKE-HWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVLWFKTEISKRFEMTDLG 1188          
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR)

HSP 1 Score: 103 bits (258), Expect = 1.040e-22
Identity = 63/161 (39.13%), Postives = 90/161 (55.90%), Query Frame = -2
Query:    2 YSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPF--------------VCPRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQPFRMKDLG 439
            ++Q EG D+ E  APVA + ++   ++LAA+HD EL+ MDV  AYLN  + E+L++ LPP+      DIP                  R WN T D  L  +G  R   ++CLY  R +GG+   LV VYVDDL++A   R  +DE K  ++  F+M+DLG
Sbjct: 1075 FTQREGVDYQEVFAPVANLESIRIILALAAKHDLELDQMDVQTAYLNGKLTEDLYL-LPPD----GVDIPKGHCWKLKKSLYGLKQAGRTWNKTFDSSLKDLGFTRLDAETCLYVMRGEGGKLCFLV-VYVDDLILAATSRAYMDEIKTKLAATFKMRDLG 1229          
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY)

HSP 1 Score: 103 bits (258), Expect = 1.040e-22
Identity = 62/160 (38.75%), Postives = 90/160 (56.25%), Query Frame = -2
Query:    2 YSQVEGEDFF--ETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFVCP------------RNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQPFRMKDLG 439
            +SQV G D+   ET APV+R+ ++ T +SLAA HD+EL  MDV +AYLN  ++E ++++LPP F+   +    VC             R W  TL   +  +G  R   D  +++ R+  GE+ ++VA  VDDL I G  + VD F  +I Q F M DLG
Sbjct: 1100 FSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQS-HLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKRE--GESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLG 1256          
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: Q75I44_ORYSJ (Retrotransposon protein, putative, Ty1-copia sub-class n=14 Tax=Oryza sativa TaxID=4530 RepID=Q75I44_ORYSJ)

HSP 1 Score: 102 bits (255), Expect = 2.610e-22
Identity = 61/162 (37.65%), Postives = 91/162 (56.17%), Query Frame = -2
Query:    2 GSRYSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFVC------------PRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQPFRMKDLG 448
            G  Y+Q EGEDFF+T +PVAR++T+   +SLAA H   +  MDV  A+LN  + EE+++  P  F +  ++   VC            P+ W+   D  L   G   +  D C+Y+ R  GGE  +++ +YVDD++I G   E ++E K  +SQ F MKDLG
Sbjct:  937 GKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGK-VCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYY-RHGGGE-GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLG 1095          
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A401GTF6_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GTF6_9APHY)

HSP 1 Score: 102 bits (255), Expect = 2.610e-22
Identity = 58/158 (36.71%), Postives = 89/158 (56.33%), Query Frame = -2
Query:    2 YSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFVCPRN------------WNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQPFRMKDLG 439
            ++QV G DF +T APVA+++++   ++LAA HD+++  MDV  AYLNA ++E++F+K PP  +   R+  +VC               W   +   L  +GL RS  D C+++  +D     L++A+ VDD  IAG    V  FK  IS+ F M DLG
Sbjct: 1001 FTQVPGVDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNAELEEDIFMKQPPGQAKRGRE-HWVCHLRHMIYGLKQSGCQWFKKISTALNEMGLSRSLVDHCVFYLDEDNDSITLIIALSVDDTTIAGMNSAVLWFKTEISKHFEMTDLG 1157          
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: I1R5L4_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=I1R5L4_ORYGL)

HSP 1 Score: 100 bits (248), Expect = 2.610e-22
Identity = 59/159 (37.11%), Postives = 89/159 (55.97%), Query Frame = -2
Query:    2 YSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFVC------------PRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQPFRMKDLG 439
            Y+Q EGEDFF+T +PVAR++T+   +SLAA H   +  MDV   +LN  + EE+++  P  F +  ++   VC            P+ W+   D  L   G   +  D C+Y+ R  GGE  +++ +YVDD++I G   E ++E K  +SQ F MKDLG
Sbjct:   96 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFLNGELDEEIYMDQPDGFVVEGQEGK-VCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYY-RHGGGE-GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLG 251          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7KG03_LASNI8.290e-2439.74Retrovirus-related pol polyprotein from transposon... [more]
A0A6G0WHK2_9STRA2.170e-2336.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J5ZCY7_9ROSI2.210e-2336.71Integrase catalytic domain-containing protein n=2 ... [more]
A0A7D9L0S1_PARCT2.960e-2335.00Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A401GQU1_9APHY7.610e-2337.34Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A409WVI7_9AGAR1.040e-2239.13Integrase catalytic domain-containing protein (Fra... [more]
A0A2G8RWY5_9APHY1.040e-2238.75Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
Q75I44_ORYSJ2.610e-2237.65Retrotransposon protein, putative, Ty1-copia sub-c... [more]
A0A401GTF6_9APHY2.610e-2236.71Integrase catalytic domain-containing protein n=1 ... [more]
I1R5L4_ORYGL2.610e-2237.11Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39915contigH-paniculata_contig39915:285..820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size500
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39915.10340.1prot_H-paniculata_contig39915.10340.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39915 351..788 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930220.5972538-UTR-H-paniculata_contig39915:284..3501622930220.5972538-UTR-H-paniculata_contig39915:284..350Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39915 285..350 -
1691481196.939284-UTR-H-paniculata_contig39915:284..3501691481196.939284-UTR-H-paniculata_contig39915:284..350Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39915 285..350 -
1622930220.6316915-UTR-H-paniculata_contig39915:788..8201622930220.6316915-UTR-H-paniculata_contig39915:788..820Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39915 789..820 -
1691481196.96833-UTR-H-paniculata_contig39915:788..8201691481196.96833-UTR-H-paniculata_contig39915:788..820Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39915 789..820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930220.608263-CDS-H-paniculata_contig39915:350..5671622930220.608263-CDS-H-paniculata_contig39915:350..567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39915 351..567 -
1691481196.9488523-CDS-H-paniculata_contig39915:350..5671691481196.9488523-CDS-H-paniculata_contig39915:350..567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39915 351..567 -
1622930220.6209779-CDS-H-paniculata_contig39915:603..7881622930220.6209779-CDS-H-paniculata_contig39915:603..788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39915 604..788 -
1691481196.9583042-CDS-H-paniculata_contig39915:603..7881691481196.9583042-CDS-H-paniculata_contig39915:603..788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39915 604..788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39915.10340.1

>prot_H-paniculata_contig39915.10340.1 ID=prot_H-paniculata_contig39915.10340.1|Name=mRNA_H-paniculata_contig39915.10340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MLCLNSSTFSRRPAMTRSSTYTATRRFVSPPSSREKYKHESVVERSSPIP
TRKSSRVLFQFRGHTNGMSREKRENSGGSLTNSSSCTGAFKYAASTSMPS
NSKSCSAARLIPVGNVDMRATGALVSKKSSPST*
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mRNA from alignment at H-paniculata_contig39915:285..820-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39915.10340.1 ID=mRNA_H-paniculata_contig39915.10340.1|Name=mRNA_H-paniculata_contig39915.10340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=536bp|location=Sequence derived from alignment at H-paniculata_contig39915:285..820- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCCAAGTCTTTCATCCTAAAAGGCTGACTTATGTTATGCTTGAACTCA TCCACTTTCTCACGACGGCCAGCAATGACCAGGTCGTCAACATACACAGC CACCAGAAGGTTCGTTTCTCCCCCATCGTCGCGGGAAAAGTACAAGCATG AATCGGTAGTGGAACGGTCGAGTCCTATCCCAACAAGAAAATCGTCAAGA GTGTTATTCCAGTTTCGGCTGCTCTGCTTGAAGTCGTACAGGCTTTTACG CAGGGGGCACACAAACGGTATGTCTCGAGAGAAAAGGGAAAACTCGGGGG GTAGCTTAACAAACAGCTCTTCTTGTACCGGGGCATTCAAATACGCCGCA TCCACGTCCATGCCTTCTAATTCGAAATCATGTTCGGCGGCCAGGCTAAT ACCAGTAGGTAACGTCGACATGCGAGCTACGGGGGCACTGGTTTCAAAGA AATCTTCACCCTCCACCTGAGAATACCTTGAGCCACCAGTCACACTTTGT AGTGTGCCACGCTATCGTCCTCCTTCAGTTTCCGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig39915:285..820-

>mRNA_H-paniculata_contig39915.10340.1 ID=mRNA_H-paniculata_contig39915.10340.1|Name=mRNA_H-paniculata_contig39915.10340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig39915:285..820- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTATGCTTGAACTCATCCACTTTCTCACGACGGCCAGCAATGACCAG
GTCGTCAACATACACAGCCACCAGAAGGTTCGTTTCTCCCCCATCGTCGC
GGGAAAAGTACAAGCATGAATCGGTAGTGGAACGGTCGAGTCCTATCCCA
ACAAGAAAATCGTCAAGAGTGTTATTCCAGTTTCGATGTTATGCTTGAAC
TCATCCACTTTCTCACGACGGCCAGCAATGACCAGGTCGTCAACATACAC
AGCCACCAGAAGGTTCGTTTCTCCCCCATCGTCGCGGGAAAAGTACAAGC
ATGAATCGGTAGTGGAACGGTCGAGTCCTATCCCAACAAGAAAATCGTCA
AGAGTGTTATTCCAGTTTCGGGGGCACACAAACGGTATGTCTCGAGAGAA
AAGGGAAAACTCGGGGGGTAGCTTAACAAACAGCTCTTCTTGTACCGGGG
CATTCAAATACGCCGCATCCACGTCCATGCCTTCTAATTCGAAATCATGT
TCGGCGGCCAGGCTAATACCAGTAGGTAACGTCGACATGCGAGCTACGGG
GGCACTGGTTTCAAAGAAATCTTCACCCTCCACCTGAGGGGCACACAAAC
GGTATGTCTCGAGAGAAAAGGGAAAACTCGGGGGGTAGCTTAACAAACAG
CTCTTCTTGTACCGGGGCATTCAAATACGCCGCATCCACGTCCATGCCTT
CTAATTCGAAATCATGTTCGGCGGCCAGGCTAATACCAGTAGGTAACGTC
GACATGCGAGCTACGGGGGCACTGGTTTCAAAGAAATCTTCACCCTCCAC
CTGA
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