mRNA_H-paniculata_contig39915.10340.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A0J7KG03_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KG03_LASNI) HSP 1 Score: 107 bits (266), Expect = 8.290e-24 Identity = 62/156 (39.74%), Postives = 88/156 (56.41%), Query Frame = -2
Query: 2 SQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFVCP----------RNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRREKVD-EFKHNISQPFRMKDLG 436
SQ+EG D+ ET +PV R +++ +LA +HD ++ MDV AAYL+ +++E++VK P E P R WN D L +G RS DSC+YF RD+ ++ +++AVYVDDL+I EKV K +SQ F MKDLG
Sbjct: 702 SQIEGIDYNETYSPVVRYTSIQFLCALAVKHDLYMDQMDVTAAYLHGDIEQEIYVKPPEELVKSGEKGKVWRPKVYIRTEASGRAWNKKFHDTLTDMGFKRSQADSCVYFKRDN--KSLVIIAVYVDDLLILASNEKVKTSLKKKLSQTFDMKDLG 855
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.170e-23 Identity = 59/163 (36.20%), Postives = 93/163 (57.06%), Query Frame = -2
Query: 2 YSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFV----------------CPRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQPFRMKDLG 439
YSQ G D+ ET PVA+ +++ +SLAA+H+ EL+ MDV+ A+LN+ + E++++++P L P + PR WN T+D F++ IG +S D C+Y R D E +LV++YVDDL++A E + K +S+ F+M DLG
Sbjct: 117 YSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIP--MGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQD--EDIILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLG 275
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A8J5ZCY7_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZCY7_9ROSI) HSP 1 Score: 105 bits (263), Expect = 2.210e-23 Identity = 58/158 (36.71%), Postives = 97/158 (61.39%), Query Frame = -2
Query: 2 YSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFS-LFSRDIPFV----------CPRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRREKV-DEFKHNISQPFRMKDLG 439
+SQ G D+ ET APVAR+ T+ ++LAA+ ++++ +DV +A+LN ++EE++V+ P F L D+ + PR W + +D +LVG+G +RS ++ LY + +G +T L+V+VYVDDL++ G + + +FK + Q F M DLG
Sbjct: 839 FSQKYGLDYLETFAPVARLDTIRLLVALAAQMEWKIHQLDVKSAFLNGFLEEEIYVEQPEGFKVLHKEDMVYKLKKALYGLKQAPRAWYSRIDSYLVGLGFERSLSEPTLYVKKKNG-KTQLIVSVYVDDLLVTGGDQAILADFKIKMHQMFEMSDLG 995
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A7D9L0S1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L0S1_PARCT) HSP 1 Score: 100 bits (249), Expect = 2.960e-23 Identity = 56/160 (35.00%), Postives = 91/160 (56.88%), Query Frame = -2
Query: 2 YSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFVC-------------PRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQPFRMKDLG 439
YSQ+ G D+ ET +P ARM+++ + LA +++ + MDV AYLNAP+ EL+V+ P F++ +D ++ RNWN+ L LV G +S +DSC+Y G++ +V ++VDD++IA + K N+S+ F+MKD+G
Sbjct: 53 YSQIPGVDYHETFSPTARMTSIRILMQLAMQYNLTIHQMDVKTAYLNAPIDCELYVEQPEGFTMTGKDGEYLVYKLRKSLYGLKQSGRNWNSVLHSHLVSEGFIQSQSDSCVYTKIS--GKSMTIVIIWVDDIIIASNCTVTLTNVKGNLSKRFQMKDMG 210
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY) HSP 1 Score: 104 bits (259), Expect = 7.610e-23 Identity = 59/158 (37.34%), Postives = 90/158 (56.96%), Query Frame = -2
Query: 2 YSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFVC------------PRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQPFRMKDLG 439
+SQ+ G DF +T APVA+++++ ++LAA HD+++ MDV AYLNA ++EE+F+K PP + ++ +VC R W + L +GL RS D C+++ +D L++A+ VDD IAG V FK IS+ F M DLG
Sbjct: 1032 FSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKE-HWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVLWFKTEISKRFEMTDLG 1188
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR) HSP 1 Score: 103 bits (258), Expect = 1.040e-22 Identity = 63/161 (39.13%), Postives = 90/161 (55.90%), Query Frame = -2
Query: 2 YSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPF--------------VCPRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQPFRMKDLG 439
++Q EG D+ E APVA + ++ ++LAA+HD EL+ MDV AYLN + E+L++ LPP+ DIP R WN T D L +G R ++CLY R +GG+ LV VYVDDL++A R +DE K ++ F+M+DLG
Sbjct: 1075 FTQREGVDYQEVFAPVANLESIRIILALAAKHDLELDQMDVQTAYLNGKLTEDLYL-LPPD----GVDIPKGHCWKLKKSLYGLKQAGRTWNKTFDSSLKDLGFTRLDAETCLYVMRGEGGKLCFLV-VYVDDLILAATSRAYMDEIKTKLAATFKMRDLG 1229
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY) HSP 1 Score: 103 bits (258), Expect = 1.040e-22 Identity = 62/160 (38.75%), Postives = 90/160 (56.25%), Query Frame = -2
Query: 2 YSQVEGEDFF--ETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFVCP------------RNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQPFRMKDLG 439
+SQV G D+ ET APV+R+ ++ T +SLAA HD+EL MDV +AYLN ++E ++++LPP F+ + VC R W TL + +G R D +++ R+ GE+ ++VA VDDL I G + VD F +I Q F M DLG
Sbjct: 1100 FSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQS-HLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKRE--GESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLG 1256
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: Q75I44_ORYSJ (Retrotransposon protein, putative, Ty1-copia sub-class n=14 Tax=Oryza sativa TaxID=4530 RepID=Q75I44_ORYSJ) HSP 1 Score: 102 bits (255), Expect = 2.610e-22 Identity = 61/162 (37.65%), Postives = 91/162 (56.17%), Query Frame = -2
Query: 2 GSRYSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFVC------------PRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQPFRMKDLG 448
G Y+Q EGEDFF+T +PVAR++T+ +SLAA H + MDV A+LN + EE+++ P F + ++ VC P+ W+ D L G + D C+Y+ R GGE +++ +YVDD++I G E ++E K +SQ F MKDLG
Sbjct: 937 GKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGK-VCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYY-RHGGGE-GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLG 1095
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: A0A401GTF6_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GTF6_9APHY) HSP 1 Score: 102 bits (255), Expect = 2.610e-22 Identity = 58/158 (36.71%), Postives = 89/158 (56.33%), Query Frame = -2
Query: 2 YSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFVCPRN------------WNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQPFRMKDLG 439
++QV G DF +T APVA+++++ ++LAA HD+++ MDV AYLNA ++E++F+K PP + R+ +VC W + L +GL RS D C+++ +D L++A+ VDD IAG V FK IS+ F M DLG
Sbjct: 1001 FTQVPGVDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNAELEEDIFMKQPPGQAKRGRE-HWVCHLRHMIYGLKQSGCQWFKKISTALNEMGLSRSLVDHCVFYLDEDNDSITLIIALSVDDTTIAGMNSAVLWFKTEISKHFEMTDLG 1157
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Match: I1R5L4_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=I1R5L4_ORYGL) HSP 1 Score: 100 bits (248), Expect = 2.610e-22 Identity = 59/159 (37.11%), Postives = 89/159 (55.97%), Query Frame = -2
Query: 2 YSQVEGEDFFETSAPVARMSTLPTGISLAAEHDFELEGMDVDAAYLNAPVQEELFVKLPPEFSLFSRDIPFVC------------PRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQPFRMKDLG 439
Y+Q EGEDFF+T +PVAR++T+ +SLAA H + MDV +LN + EE+++ P F + ++ VC P+ W+ D L G + D C+Y+ R GGE +++ +YVDD++I G E ++E K +SQ F MKDLG
Sbjct: 96 YTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFLNGELDEEIYMDQPDGFVVEGQEGK-VCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYY-RHGGGE-GVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLG 251 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39915.10340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig39915.10340.1 >prot_H-paniculata_contig39915.10340.1 ID=prot_H-paniculata_contig39915.10340.1|Name=mRNA_H-paniculata_contig39915.10340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp MLCLNSSTFSRRPAMTRSSTYTATRRFVSPPSSREKYKHESVVERSSPIPback to top mRNA from alignment at H-paniculata_contig39915:285..820- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig39915.10340.1 ID=mRNA_H-paniculata_contig39915.10340.1|Name=mRNA_H-paniculata_contig39915.10340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=536bp|location=Sequence derived from alignment at H-paniculata_contig39915:285..820- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig39915:285..820- >mRNA_H-paniculata_contig39915.10340.1 ID=mRNA_H-paniculata_contig39915.10340.1|Name=mRNA_H-paniculata_contig39915.10340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig39915:285..820- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |