mRNA_H-paniculata_contig3983.10328.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3983.10328.1
Unique NamemRNA_H-paniculata_contig3983.10328.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3983.10328.1 vs. uniprot
Match: D7FU95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU95_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 3.600e-12
Identity = 71/182 (39.01%), Postives = 96/182 (52.75%), Query Frame = 1 
Query:  856 GLPPSGRTGS-VGTRPGSLEYSKLGEGKMPRSRTSSVGSMESGGLASEI--RELTEKERLMRTQEADAARAASLLRGSSFKVPKDAELQRATTEEEQMRRRQAVEDFEQNVT--AARSAGEQPSLGGDGIVGPSPA------------------GFSANSPPSTATSVVGKVLAGFGMGRFF 1332
            GLPPSGR+ S   +R  S++Y        P SR +   +  +   A E+  R+LTE+ER MR ++++AARAAS+LRGSSFK P   +L+ A   E+Q RRRQAV+  E +    +   A E   LG    +   PA                  G +A SP   AT  +GKV+AG GM RFF
Sbjct:  617 GLPPSGRSSSNSSSRIQSVDY--------PASRVARSRAASNSSSADELSQRDLTEEERQMRVEDSEAARAASVLRGSSFKTPLHPDLEHAIAVEQQDRRRQAVQGLEASRAPDSGTGAAEPVDLGSPADL---PAEVVAAAITAAAAGDAEKEGEAAASPSPAATGFMGKVVAGMGMSRFF 787
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BLAST of mRNA_H-paniculata_contig3983.10328.1 vs. uniprot
Match: A0A6H5JL50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL50_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.160e-11
Identity = 75/196 (38.27%), Postives = 102/196 (52.04%), Query Frame = 1 
Query:  856 GLPPSGRTGSVGTRPGSLEYSKLGEGKMPRSRTSSVGSMESGGLASEI--RELTEKERLMRTQEADAARAASLLRGSSFKVPKDAELQRATTEEEQMRRRQAVEDFEQNVT--AARSAGEQPSLGGDGIVGPSPA-----------------GFSANSPPSTATSVVGKVLAGFGMG--RFFGVSGEEPKPPSAAA 1374
            GLPPSGR+ S  +       S++     P SR     +  +   A E+  R+LTE+E  MR ++A+AARAAS+LRGSSFK P   +L+RA   EEQ RRRQAV+  E ++   +   A E   LG    + P+ A                 G S +S P+ AT  +GKV+AG GMG  R FG       P +A+A
Sbjct:  740 GLPPSGRSSSNSS-------SRIQSVDHPASRAVRSRAASNSSSADELSQRDLTEEEHQMRVEDAEAARAASVLRGSSFKTPLQPDLERAIAVEEQERRRQAVQAVEASLAPDSGTGAAEPVDLGSPADL-PAEAVTAAIAASATGDTEKEGGASVSSSPA-ATGFMGKVVAGMGMGMSRIFGPRSPANTPSAASA 926
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3983.10328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU95_ECTSI3.600e-1239.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL50_9PHAE1.160e-1138.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3983contigH-paniculata_contig3983:11405..13313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1375
Cds size1374
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930219.2929769-CDS-H-paniculata_contig3983:11405..116421622930219.2929769-CDS-H-paniculata_contig3983:11405..11642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3983 11406..11642 -
1691481196.2859929-CDS-H-paniculata_contig3983:11405..116421691481196.2859929-CDS-H-paniculata_contig3983:11405..11642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3983 11406..11642 -
1622930219.315065-CDS-H-paniculata_contig3983:12176..133131622930219.315065-CDS-H-paniculata_contig3983:12176..13313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3983 12177..13313 -
1691481196.296357-CDS-H-paniculata_contig3983:12176..133131691481196.296357-CDS-H-paniculata_contig3983:12176..13313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3983 12177..13313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3983.10328.1prot_H-paniculata_contig3983.10328.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3983 11406..13313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3983.10328.1

>prot_H-paniculata_contig3983.10328.1 ID=prot_H-paniculata_contig3983.10328.1|Name=mRNA_H-paniculata_contig3983.10328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=458bp
PSNRSLHGGDATTSAADAAAAAAVVSAGVAIAATDFGAPSSSNISDDTDS
QASSVSGAVQSWVKGEGAMGAPSGRSLGDAAAALGSNPGIIDDDDDDDDD
DDDDGDDGDDEFDSKGMTSASGRSESELSHTPSGRQVIVGAEDMGLGEPQ
PGSSETSGLGEVGSSFTASAASSGGTRSYFGELGGYHDDSQASIGGMIIG
NASYREGGETATRASVTSAGEFQPSTSLAKGEERVEQEALELELAAGKQE
GSGAAGTEEMDIGVGAAAAAAAAAAAATAAAAAAEGLPPSGRTGSVGTRP
GSLEYSKLGEGKMPRSRTSSVGSMESGGLASEIRELTEKERLMRTQEADA
ARAASLLRGSSFKVPKDAELQRATTEEEQMRRRQAVEDFEQNVTAARSAG
EQPSLGGDGIVGPSPAGFSANSPPSTATSVVGKVLAGFGMGRFFGVSGEE
PKPPSAAA
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mRNA from alignment at H-paniculata_contig3983:11405..13313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3983.10328.1 ID=mRNA_H-paniculata_contig3983.10328.1|Name=mRNA_H-paniculata_contig3983.10328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1909bp|location=Sequence derived from alignment at H-paniculata_contig3983:11405..13313- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAGCAATCGTAGTCTACACGGGGGAGACGCCACCACGTCGGCGGCGGA
TGCCGCCGCAGCCGCAGCTGTAGTCTCAGCGGGCGTGGCGATTGCAGCCA
CCGACTTCGGCGCCCCGAGCTCTAGCAACATCAGCGACGATACCGACAGC
CAGGCGAGCAGTGTCAGCGGCGCCGTCCAGTCGTGGGTGAAGGGGGAAGG
AGCTATGGGGGCCCCCAGCGGTCGGTCGCTGGGAGACGCGGCAGCGGCGC
TCGGCAGCAACCCTGGCATCATCGATGATGACGATGATGACGATGATGAT
GATGATGATGATGGCGATGATGGCGATGACGAGTTCGACTCGAAGGGCAT
GACGAGCGCCAGCGGCAGGAGCGAGAGCGAGCTGTCGCATACGCCCAGCG
GGCGGCAGGTGATCGTGGGCGCCGAAGACATGGGGCTCGGCGAGCCGCAG
CCGGGGTCGTCTGAGACGAGCGGCCTGGGCGAAGTCGGCAGTAGCTTTAC
GGCGTCTGCCGCGTCATCGGGGGGCACCAGGTCGTATTTCGGTGAGCTCG
GCGGGTACCATGACGACAGTCAGGCGTCCATCGGCGGGATGATTATCGGC
AACGCGTCGTACCGGGAAGGAGGGGAGACCGCCACCCGCGCGTCCGTTAC
GTCTGCAGGGGAATTCCAACCGTCGACTTCCCTCGCGAAAGGAGAGGAGC
GCGTGGAGCAAGAAGCTTTGGAGCTCGAGCTTGCCGCCGGCAAGCAAGAA
GGATCGGGAGCAGCGGGGACCGAAGAGATGGATATTGGTGTGGGCGCTGC
GGCTGCGGCTGCGGCTGCTGCCGCCGCCGCCACAGCGGCGGCCGCGGCAG
CAGAGGGTCTTCCTCCGTCTGGCCGGACTGGCAGCGTCGGGACCCGACCC
GGGTCGTTGGAGTATTCGAAGCTCGGAGAGGGAAAGATGCCGCGGTCGCG
GACTTCTTCAGTCGGGAGTATGGAGAGTGGTGGTCTCGCAAGTGAGATTC
GCGAGCTGACGGAGAAGGAGCGGCTGATGAGGACCCAGGAGGCAGACGCT
GCCCGCGCGGCGTCGCTGCTTCGAGGCAGCTCGTTCAAGGTGCCTAAAGA
TGCGGAGCTGCAGCGTGCCACTACCGAAGAAGAGCAGGTGATTTTTTTTG
TGGATTTTGACTGGGAGGGGCGTTGAGCTCCCACGGTGACTCTGATGCGG
TAATGGCCGCGGTACATCTTGTGTGTTTTGGTGACTTTTGCCCATGATTT
TGCTGTTGTTATCTTTTTTTTATCGACCTGGATTGTGCGCTATGGAGGAA
ACATAGTTTTTGTTGCCACGGAGAGAAATAAGCAGAAGTAATGGTAGCGC
TTCATAAATCCCATCTAAACAGTCATCCATATTTGATTTTACCACGAGTA
GGCGAAGAGGTCATGGCTACGCCAGGTACGTACCTACAAAACTCAAGACC
CCCTCTTGATGAGCGTAGCGTATCATGTAATCGGGACACTTCTACCTTGT
GCCTCTCGGCCGTACCCTATCATACATTCGAGGTCCCTAGACCAAAGTAC
AAGGCTCTGCAGTACGCACGTGCGGTAGGTGCCAACAGCCTTCAACCCGC
CCCCCCCCCCGCCCCACGCGCCATCCCTACACCACCTCCTCACCCCCTCA
TCGTCCCACGATACAAAATAGATGCGGCGCCGACAAGCAGTCGAGGATTT
CGAACAAAACGTGACCGCCGCCAGATCTGCCGGCGAACAACCCTCCCTTG
GCGGTGACGGAATCGTTGGTCCTTCCCCCGCGGGCTTCTCCGCCAACAGC
CCGCCCTCCACCGCCACAAGCGTCGTGGGCAAGGTCCTTGCGGGTTTCGG
CATGGGCCGTTTCTTTGGCGTGTCGGGCGAAGAACCGAAACCGCCTTCCG
CCGCTGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3983:11405..13313-

>mRNA_H-paniculata_contig3983.10328.1 ID=mRNA_H-paniculata_contig3983.10328.1|Name=mRNA_H-paniculata_contig3983.10328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2748bp|location=Sequence derived from alignment at H-paniculata_contig3983:11405..13313- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAGCAATCGTAGTCTACACGGGGGAGACGCCACCACGTCGGCGGCGGA
TGCCGCCGCAGCCGCAGCTGTAGTCTCAGCGGGCGTGGCGATTGCAGCCA
CCGACTTCGGCGCCCCGAGCTCTAGCAACATCAGCGACGATACCGACAGC
CAGGCGAGCAGTGTCAGCGGCGCCGTCCAGTCGTGGGTGAAGGGGGAAGG
AGCTATGGGGGCCCCCAGCGGTCGGTCGCTGGGAGACGCGGCAGCGGCGC
TCGGCAGCAACCCTGGCATCATCGATGATGACGATGATGACGATGATGAT
GATGATGATGATGGCGATGATGGCGATGACGAGTTCGACTCGAAGGGCAT
GACGAGCGCCAGCGGCAGGAGCGAGAGCGAGCTGTCGCATACGCCCAGCG
GGCGGCAGGTGATCGTGGGCGCCGAAGACATGGGGCTCGGCGAGCCGCAG
CCGGGGTCGTCTGAGACGAGCGGCCTGGGCGAAGTCGGCAGTAGCTTTAC
GGCGTCTGCCGCGTCATCGGGGGGCACCAGGTCGTATTTCGGTGAGCTCG
GCGGGTACCATGACGACAGTCAGGCGTCCATCGGCGGGATGATTATCGGC
AACGCGTCGTACCGGGAAGGAGGGGAGACCGCCACCCGCGCGTCCGTTAC
GTCTGCAGGGGAATTCCAACCGTCGACTTCCCTCGCGAAAGGAGAGGAGC
GCGTGGAGCAAGAAGCTTTGGAGCTCGAGCTTGCCGCCGGCAAGCAAGAA
GGATCGGGAGCAGCGGGGACCGAAGAGATGGATATTGGTGTGGGCGCTGC
GGCTGCGGCTGCGGCTGCTGCCGCCGCCGCCACAGCGGCGGCCGCGGCAG
CAGAGGGTCTTCCTCCGTCTGGCCGGACTGGCAGCGTCGGGACCCGACCC
GGGTCGTTGGAGTATTCGAAGCTCGGAGAGGGAAAGATGCCGCGGTCGCG
GACTTCTTCAGTCGGGAGTATGGAGAGTGGTGGTCTCGCAAGTGAGATTC
GCGAGCTGACGGAGAAGGAGCGGCTGATGAGGACCCAGGAGGCAGACGCT
GCCCGCGCGGCGTCGCTGCTTCGAGGCAGCTCGTTCAAGGTGCCTAAAGA
TGCGGAGCTGCAGCGTGCCACTACCGAAGAAGAGCAGCCCAGCAATCGTA
GTCTACACGGGGGAGACGCCACCACGTCGGCGGCGGATGCCGCCGCAGCC
GCAGCTGTAGTCTCAGCGGGCGTGGCGATTGCAGCCACCGACTTCGGCGC
CCCGAGCTCTAGCAACATCAGCGACGATACCGACAGCCAGGCGAGCAGTG
TCAGCGGCGCCGTCCAGTCGTGGGTGAAGGGGGAAGGAGCTATGGGGGCC
CCCAGCGGTCGGTCGCTGGGAGACGCGGCAGCGGCGCTCGGCAGCAACCC
TGGCATCATCGATGATGACGATGATGACGATGATGATGATGATGATGATG
GCGATGATGGCGATGACGAGTTCGACTCGAAGGGCATGACGAGCGCCAGC
GGCAGGAGCGAGAGCGAGCTGTCGCATACGCCCAGCGGGCGGCAGGTGAT
CGTGGGCGCCGAAGACATGGGGCTCGGCGAGCCGCAGCCGGGGTCGTCTG
AGACGAGCGGCCTGGGCGAAGTCGGCAGTAGCTTTACGGCGTCTGCCGCG
TCATCGGGGGGCACCAGGTCGTATTTCGGTGAGCTCGGCGGGTACCATGA
CGACAGTCAGGCGTCCATCGGCGGGATGATTATCGGCAACGCGTCGTACC
GGGAAGGAGGGGAGACCGCCACCCGCGCGTCCGTTACGTCTGCAGGGGAA
TTCCAACCGTCGACTTCCCTCGCGAAAGGAGAGGAGCGCGTGGAGCAAGA
AGCTTTGGAGCTCGAGCTTGCCGCCGGCAAGCAAGAAGGATCGGGAGCAG
CGGGGACCGAAGAGATGGATATTGGTGTGGGCGCTGCGGCTGCGGCTGCG
GCTGCTGCCGCCGCCGCCACAGCGGCGGCCGCGGCAGCAGAGGGTCTTCC
TCCGTCTGGCCGGACTGGCAGCGTCGGGACCCGACCCGGGTCGTTGGAGT
ATTCGAAGCTCGGAGAGGGAAAGATGCCGCGGTCGCGGACTTCTTCAGTC
GGGAGTATGGAGAGTGGTGGTCTCGCAAGTGAGATTCGCGAGCTGACGGA
GAAGGAGCGGCTGATGAGGACCCAGGAGGCAGACGCTGCCCGCGCGGCGT
CGCTGCTTCGAGGCAGCTCGTTCAAGGTGCCTAAAGATGCGGAGCTGCAG
CGTGCCACTACCGAAGAAGAGCAGATGCGGCGCCGACAAGCAGTCGAGGA
TTTCGAACAAAACGTGACCGCCGCCAGATCTGCCGGCGAACAACCCTCCC
TTGGCGGTGACGGAATCGTTGGTCCTTCCCCCGCGGGCTTCTCCGCCAAC
AGCCCGCCCTCCACCGCCACAAGCGTCGTGGGCAAGGTCCTTGCGGGTTT
CGGCATGGGCCGTTTCTTTGGCGTGTCGGGCGAAGAACCGAAACCGCCTT
CCGCCGCTGCTATGCGGCGCCGACAAGCAGTCGAGGATTTCGAACAAAAC
GTGACCGCCGCCAGATCTGCCGGCGAACAACCCTCCCTTGGCGGTGACGG
AATCGTTGGTCCTTCCCCCGCGGGCTTCTCCGCCAACAGCCCGCCCTCCA
CCGCCACAAGCGTCGTGGGCAAGGTCCTTGCGGGTTTCGGCATGGGCCGT
TTCTTTGGCGTGTCGGGCGAAGAACCGAAACCGCCTTCCGCCGCTGCT
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