mRNA_H-paniculata_contig3977.10314.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3977.10314.1
Unique NamemRNA_H-paniculata_contig3977.10314.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3977.10314.1 vs. uniprot
Match: D7FP39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP39_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 6.540e-11
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 GEDWPGIKAAVFGTFSMDMRRLTEEIPSLFSMNNRSVAVLVLHGDNSLERTK 156
            G+  PGIKAA+FGT S+ + RL EEIPSLFS +N +V VLVLHG+ SL R +
Sbjct:  122 GKGGPGIKAAIFGTMSLQIGRLAEEIPSLFSRSNLTVPVLVLHGEKSLRRLR 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3977.10314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP39_ECTSI6.540e-1161.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3977contigH-paniculata_contig3977:9753..10943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue2.6e-09
Seed eggNOG ortholog2880.D7FP39
Hectar predicted targeting categoryother localisation
EggNOG OGs2E1MX@1,2S8Y8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size308
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930217.053603-CDS-H-paniculata_contig3977:9754..100011622930217.053603-CDS-H-paniculata_contig3977:9754..10001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3977 9755..10001 -
1691481195.4219027-CDS-H-paniculata_contig3977:9754..100011691481195.4219027-CDS-H-paniculata_contig3977:9754..10001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3977 9755..10001 -
1622930217.070331-CDS-H-paniculata_contig3977:10884..109431622930217.070331-CDS-H-paniculata_contig3977:10884..10943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3977 10885..10943 -
1691481195.431477-CDS-H-paniculata_contig3977:10884..109431691481195.431477-CDS-H-paniculata_contig3977:10884..10943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3977 10885..10943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3977.10314.1prot_H-paniculata_contig3977.10314.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3977 9755..10943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3977.10314.1

>prot_H-paniculata_contig3977.10314.1 ID=prot_H-paniculata_contig3977.10314.1|Name=mRNA_H-paniculata_contig3977.10314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
GEDWPGIKAAVFGTFSMDMRRLTEEIPSLFSMNNRSVAVLVLHGDNSLER
TKHQPRLEPKNLLQQPNPLPLLPPATDHDLTFPGDVDATGTRAENRNVDW
RG
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mRNA from alignment at H-paniculata_contig3977:9753..10943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3977.10314.1 ID=mRNA_H-paniculata_contig3977.10314.1|Name=mRNA_H-paniculata_contig3977.10314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1191bp|location=Sequence derived from alignment at H-paniculata_contig3977:9753..10943- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGAGGACTGGCCTGGTATTAAGGCGGCTGTGTTCGGGACGTTTTCGAT
GGACATGAGGTATTAAGTGTTTTTCCTCGTGGGTGGGCTGGTGGTGGGTT
TTGGTACTCTTGTTTATAATCGGTGAAGAACATGAACACCTGGTGTATGG
GTATGTGTATGTGTGCTGTGTGAGGCAGCAGCACGATCAAATGATTCTAC
TACTACAAGGGGAAGACGACGGTTATACAATGGGGAAACGCAATGTTTTT
CTTGCTGATTTGATTCCGTTTGCTCTATTTTTGTTTATTATCTCCCGCGG
GAGTTTTGATCGATTCTATGGGGGAAACCCATCCGAACAATAGATACCGA
GATATGCAAATACAAAGCTACGAGGTTATGCTCACTCGCTGGCTTGGCTT
ATGGTTTGTTGGGGGCCTTGGCACGGTTGACCTGGAGCCGTAGAGCATGA
GGTCATTGCTGTCCTTTGTTACATTTTTATTTCTTTGCTTGGAAACGAGT
GCACTAGGGATGCTTTCTGGCGCAAAGCGTTCGTTTTTGGGTGTTATTTT
CAGGCGTGTTGCTTTGCGTGTCTCGGGGTTCCTCTGTGTGTGACAATCGG
TCCTCAGGCCTCACTAATGTTGTTTTTTTGCCAAAAACGCCGAAAGTGAC
GTGTCCAGAGCATTTTTTCCATCAGAGCATAAGTGGGTAACTACTAGTAC
AAGTGATGACAAATAAGAAGCTCACTTCAAACATCAGCAGATAACAAGCG
TAGCCGGTTTTCGTGGCCATTTCCATCGTTCCCATGCAGAAGAGAGGCCT
CGAACTTGATGCAAAATTCAAGCAAGAACCGTTTCGAAGCAGAAGAAAAC
AGGAACAACACAAAAAATACAATCACGTTTCATTGAGACATAGATGACAC
CACGTGCTTCAATGTACCACCTTTCACATACGTCCCATCCAGGAGGTTAA
CGGAGGAGATACCGAGCCTCTTTTCGATGAACAACCGGTCCGTCGCGGTG
TTGGTCCTGCACGGCGACAACTCCCTCGAGAGAACGAAGCATCAGCCACG
GCTGGAACCGAAGAACCTTCTACAACAACCGAACCCGCTGCCGCTGCTGC
CGCCGGCCACTGACCACGACTTGACATTTCCCGGTGACGTCGACGCCACT
GGCACGAGGGCGGAGAACAGGAACGTCGATTGGAGAGGCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig3977:9753..10943-

>mRNA_H-paniculata_contig3977.10314.1 ID=mRNA_H-paniculata_contig3977.10314.1|Name=mRNA_H-paniculata_contig3977.10314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig3977:9753..10943- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGAGGACTGGCCTGGTATTAAGGCGGCTGTGTTCGGGACGTTTTCGAT
GGACATGAGGGTGAGGACTGGCCTGGTATTAAGGCGGCTGTGTTCGGGAC
GTTTTCGATGGACATGAGGAGGTTAACGGAGGAGATACCGAGCCTCTTTT
CGATGAACAACCGGTCCGTCGCGGTGTTGGTCCTGCACGGCGACAACTCC
CTCGAGAGAACGAAGCATCAGCCACGGCTGGAACCGAAGAACCTTCTACA
ACAACCGAACCCGCTGCCGCTGCTGCCGCCGGCCACTGACCACGACTTGA
CATTTCCCGGTGACGTCGACGCCACTGGCACGAGGGCGGAGAACAGGAAC
GTCGATTGGAGAGGCGAGGTTAACGGAGGAGATACCGAGCCTCTTTTCGA
TGAACAACCGGTCCGTCGCGGTGTTGGTCCTGCACGGCGACAACTCCCTC
GAGAGAACGAAGCATCAGCCACGGCTGGAACCGAAGAACCTTCTACAACA
ACCGAACCCGCTGCCGCTGCTGCCGCCGGCCACTGACCACGACTTGACAT
TTCCCGGTGACGTCGACGCCACTGGCACGAGGGCGGAGAACAGGAACGTC
GATTGGAGAGGC
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