mRNA_H-paniculata_contig39760.10310.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39760.10310.1
Unique NamemRNA_H-paniculata_contig39760.10310.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39760.10310.1 vs. uniprot
Match: D7FP29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP29_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 3.340e-18
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    4 LEDLCVDTVFGERSVRLLNDRGIKAMKSLDVAILPAHTLVEGETFATPEADGRHYPILVPLE 189
            LE +C+DTVFG   V+LLN++G+  MK + V ++PAH LVEG+ +ATP+ DGRH+P L PLE
Sbjct:  179 LEQVCIDTVFGAHGVQLLNEQGLAVMKEMGVPVVPAHMLVEGQQWATPDGDGRHFPYLTPLE 240
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BLAST of mRNA_H-paniculata_contig39760.10310.1 vs. uniprot
Match: A0A250X0K3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X0K3_9CHLO)

HSP 1 Score: 48.9 bits (115), Expect = 4.530e-5
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:    1 RLEDLCVDTVFGERSVRLLNDRGIKAMKSLD------VAILPAHTLVEGETFATPEADGRHYPILVPLE 189
            ++++ C   +F E  ++ LN R  K +K  +      V ++  H +   +++ATP ADGRHYP LVPLE
Sbjct:  371 QVQEFCEKALFMEEGMQYLNGRVRKFLKEWEKDAGRVVDVVDGHLITWQKSWATPVADGRHYPTLVPLE 439
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39760.10310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP29_ECTSI3.340e-1856.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A250X0K3_9CHLO4.530e-536.23Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39760contigH-paniculata_contig39760:361..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_002270.1
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930216.6790845-CDS-H-paniculata_contig39760:360..5491622930216.6790845-CDS-H-paniculata_contig39760:360..549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39760 361..549 +
1691481195.3055441-CDS-H-paniculata_contig39760:360..5491691481195.3055441-CDS-H-paniculata_contig39760:360..549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39760 361..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39760.10310.1prot_H-paniculata_contig39760.10310.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39760 361..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39760.10310.1

>prot_H-paniculata_contig39760.10310.1 ID=prot_H-paniculata_contig39760.10310.1|Name=mRNA_H-paniculata_contig39760.10310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
RLEDLCVDTVFGERSVRLLNDRGIKAMKSLDVAILPAHTLVEGETFATPE
ADGRHYPILVPLE
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mRNA from alignment at H-paniculata_contig39760:361..549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39760.10310.1 ID=mRNA_H-paniculata_contig39760.10310.1|Name=mRNA_H-paniculata_contig39760.10310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig39760:361..549+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTTGGAAGATCTGTGCGTTGACACTGTTTTCGGGGAGCGGTCAGTGCG
ACTCCTCAACGATCGAGGGATTAAGGCGATGAAAAGTCTCGACGTGGCAA
TCCTTCCGGCACACACCTTGGTCGAGGGGGAAACATTTGCAACCCCTGAA
GCGGACGGGCGACACTATCCTATCCTCGTGCCCTTGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig39760:361..549+

>mRNA_H-paniculata_contig39760.10310.1 ID=mRNA_H-paniculata_contig39760.10310.1|Name=mRNA_H-paniculata_contig39760.10310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig39760:361..549+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTTGGAAGATCTGTGCGTTGACACTGTTTTCGGGGAGCGGTCAGTGCG
ACTCCTCAACGATCGAGGGATTAAGGCGATGAAAAGTCTCGACGTGGCAA
TCCTTCCGGCACACACCTTGGTCGAGGGGGAAACATTTGCAACCCCTGAA
GCGGACGGGCGACACTATCCTATCCTCGTGCCCTTGGAGCGGTTGGAAGA
TCTGTGCGTTGACACTGTTTTCGGGGAGCGGTCAGTGCGACTCCTCAACG
ATCGAGGGATTAAGGCGATGAAAAGTCTCGACGTGGCAATCCTTCCGGCA
CACACCTTGGTCGAGGGGGAAACATTTGCAACCCCTGAAGCGGACGGGCG
ACACTATCCTATCCTCGTGCCCTTGGAG
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